fix: verify_honk_proof inputs generation in bootstrap #12457
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Closes AztecProtocol/barretenberg#1279.
Closes AztecProtocol/barretenberg#1189.
Closes AztecProtocol/barretenberg#1285.
Reorders compilation so that we compile verify_honk_proof and verify_rollup_honk_proof only after compiling the rest of the programs and running write_recursion_inputs_honk to generate new Prover.tomls.
Also adds input generation for double_verify_honk_proof. This style of input generation is an easier flow for future updating.