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Minor fix to config file
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thesyntaxinator committed Oct 8, 2015
1 parent d5af6c8 commit c5facde
Showing 1 changed file with 2 additions and 2 deletions.
4 changes: 2 additions & 2 deletions code/config/datasets.yml
Original file line number Diff line number Diff line change
Expand Up @@ -102,7 +102,7 @@ cg69:
# - phastCons most conserved element lod score
# Comment: DOES NOT match alt allele from vcf file to risk variant
# Delimiters_for_multiple_matches: '|'
# ColumnNames: ['chrom', 'start', 'stop', 'MSA_MCE_score', 'MSA_MCE_lod']
# ColumnHeaders: ['chrom', 'start', 'stop', 'MSA_MCE_score', 'MSA_MCE_lod']
# DataType: ['varchar(10)', 'int', 'int', 'varchar(255)', 'varchar(500)']

dbnsfp:
Expand All @@ -123,7 +123,7 @@ dbnsfp:
- GERP++ predictions for NS SNVs from dbNSFP
Comment: ['on dbNSFP scale, larger score is more conserved', 'http://onlinelibrary_wiley_com/doi/10_1002/humu_21517/full']
Delimiters_for_multiple_matches: ''
ColumnNames: ["chrom", "start", "end", "ref", "alt", "SIFT_score", "SIFT_pred", "Polyphen2_HDIV_score", "Polyphen2_HDIV_pred", "Polyphen2_HVAR_score", "Polyphen2_HVAR_pred", "LRT_score", "LRT_pred", "MutationTaster_score", "MutationTaster_pred", "MutationAssessor_score", "MutationAssessor_pred", "FATHMM_score", "FATHMM_pred", "RadialSVM_score", "RadialSVM_pred", "LR_score", "LR_pred", "VEST3_score", "CADD_raw", "CADD_phred", "GERP++_RS", "phyloP46way_placental", "phyloP100way_vertebrate", "SiPhy_29way_logOdds"]
ColumnHeaders: ["chrom", "start", "end", "ref", "alt", "SIFT_score", "SIFT_pred", "Polyphen2_HDIV_score", "Polyphen2_HDIV_pred", "Polyphen2_HVAR_score", "Polyphen2_HVAR_pred", "LRT_score", "LRT_pred", "MutationTaster_score", "MutationTaster_pred", "MutationAssessor_score", "MutationAssessor_pred", "FATHMM_score", "FATHMM_pred", "RadialSVM_score", "RadialSVM_pred", "LR_score", "LR_pred", "VEST3_score", "CADD_raw", "CADD_phred", "GERP++_RS", "phyloP46way_placental", "phyloP100way_vertebrate", "SiPhy_29way_logOdds"]
DataType: ['varchar(10)', 'int', 'int', 'varchar(512)', 'varchar(512)', 'double', 'varchar(1)', 'double', 'varchar(1)', 'double', 'varchar(1)', 'double', 'varchar(1)', 'double', 'varchar(1)', 'double', 'varchar(1)', 'double', 'varchar(1)', 'double', 'varchar(1)', 'double', 'varchar(1)', 'double', 'double', 'double', 'double', 'double', 'double', 'double']

# If you would like to import additional datasets for use in annotation, add them below. To find out more about the information required for each dataset listed in this file, see the datasets above and datasets_spec.yml.

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