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Merge pull request #45 from Arcadia-Science/dev
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small changes from dev -> master for release
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taylorreiter authored Feb 17, 2023
2 parents 47f7436 + 19c5647 commit f42704e
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4 changes: 2 additions & 2 deletions CHANGELOG.md
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The format is based on [Keep a Changelog](https://keepachangelog.com/en/1.0.0/)
and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0.html).

## v1.0 - February 2023
## v1.0.0 - February 2023

Initial release of Arcadia-Science/seqqc, created with the [nf-core](https://nf-co.re/) template.

### `Added`

- Local module to download sourmash GTDB database and human signature
- Local module to download sourmash contamination database
- Workflow to run sourmash gather to detect routine contamination
- Workflow to run sourmash compare to determine sequence similarity between samples
- Integration of sourmash outputs into the MultiQC outputs (when run with docker profile only)
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1 change: 0 additions & 1 deletion modules/local/download_sourmash_gather_dbs.nf
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Expand Up @@ -2,7 +2,6 @@ process DOWNLOAD_SOURMASH_GATHER_DBS {
tag "gatherdb"
label 'process_single'

conda "conda-forge::wget=1.20.1"
conda "bioconda::gnu-wget=1.18"
container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
'https://depot.galaxyproject.org/singularity/gnu-wget:1.18--h60da905_7' :
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