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refactor: remove Gitpod mechanism (#53)
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@@ -1,4 +1,3 @@ | ||
[![Contribute with Gitpod](https://img.shields.io/badge/Contribute%20with-Gitpod-908a85?logo=gitpod)](https://gitpod.io/#https://github.com/AngryMaciek/warlock) | ||
[![ci-pipeline](https://github.com/AngryMaciek/warlock/workflows/ci-pipeline/badge.svg)](https://github.com/AngryMaciek/warlock/actions?query=workflow%3Aci-pipeline) | ||
[![CodeFactor](https://www.codefactor.io/repository/github/angrymaciek/warlock/badge/master)](https://www.codefactor.io/repository/github/angrymaciek/warlock/overview/master) | ||
[![Docker](https://badgen.net/badge/icon/docker?icon=docker&label)](https://hub.docker.com/r/angrymaciek/warlock) | ||
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@@ -45,6 +44,11 @@ We have prepared a dedicated [conda environment](https://docs.conda.io/projects/ | |
bash prepare-environments.sh | ||
``` | ||
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5. Finally, feel free to verify the installation with a small test script | ||
```bash | ||
bash testscript.sh | ||
``` | ||
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## Configuration | ||
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For a detailed description of all available simulation parameters please inspect [GitHub repository](https://github.com/robjohnnoble/demon_model) of the core _demon_ model. | ||
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@@ -117,12 +121,6 @@ Running large workflows with hundreds of cluster jobs might take very long; cons | |
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After each pipeline run the main output directory will contain three subdirectories: `configfiles`, `simulations` and `logs`. Each simulation run with a specific set of parameters is encoded by a 4-letter code. The first directory contains configuration files for each of the simulation runs; `simulations` contain all _demon_ output files; `logs` keep captured standard output and error streams for the commands. | ||
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## Example | ||
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Feel free to run the pipeline and inspect the results yourself in an [interactive jupyter notebook](https://mybinder.org/v2/gh/AngryMaciek/warlock/master?labpath=notebook.ipynb) we prepared. | ||
Alternatively, feel free to run a small test script on your local machine with | ||
`bash testscript.sh`. | ||
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## Community guidelines | ||
For guidelines on how to contribute to the project or report issues, please see [contributing instructions](/CONTRIBUTING.md). | ||
For other inquires feel free to contact project lead by email: [✉️](mailto:[email protected]) | ||
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