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Coursework_R

Some examples of my code on R

EXPLORING PROTEIN POCKETS

rmsd_proteins.r: This R script processes RMSD data to create a hierarchical clustering dendrogram that classifies and visualizes protein structural similarities, with colored branches based on predefined classifications.

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descriptors_proteins.r: This R script performs hierarchical clustering and visualization of proteins or molecules based on their descriptors.

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RNN for Binary Integer Summation

rmsd_proteins.r: This R script demonstrates how to train a recurrent neural network (RNN) in R to predict the sum of two integers based on their binary representations. Using the rnn library, the model is trained on random integers (X1, X2) and their sums (Y), converted into binary sequences. The script evaluates the model on both training and test data and visualizes the results with scatterplots comparing expected vs. predicted outputs.

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Some examples of my code on R

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