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ENH: Update to b1 level glue file creation script #41

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merged 3 commits into from
Apr 22, 2024
Merged

ENH: Update to b1 level glue file creation script #41

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cf52146
ENH: Changed default output directory to wolf2, removed processes fro…
jrobrien91 Feb 29, 2024
e3d38cf
Merge branch 'ARM-Development:main' into slurm_script
jrobrien91 Apr 22, 2024
305c829
ENH: update to python script for glue-processing via slurm
jrobrien91 Apr 22, 2024
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16 changes: 9 additions & 7 deletions scripts/sail_glue.py
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Original file line number Diff line number Diff line change
Expand Up @@ -71,12 +71,9 @@ def fix_times(ds):
return ds

def granule(Dvolume):
print('in granule')
n_tilts = 8
#data_dir = "/gpfs/wolf/atm124/proj-shared/gucxprecipradarS2.00/nc_files/" + month + "_nc/"
#out_dir = "/gpfs/wolf/atm124/proj-shared/gucxprecipradarS2.00/glue_files/" + month + "_glued/"
month = Dvolume[0].split('/')[-2].split('_')[0]
out_dir = Dvolume[0].split('nc_files')[0] + "glue_files/" + month + "_glued/"
out_dir = '/gpfs/wolf2/arm/atm124/proj-shared/gucxprecipradarS2_new/glue_files/%s_glued/' % month

# Read the base scan to determine if it can be read in
if len(Dvolume) == 8:
Expand Down Expand Up @@ -120,7 +117,7 @@ def main(args):
# Define directories
month = args.month
path = '/gpfs/wolf/atm124/proj-shared/gucxprecipradarS2.00/nc_files/%s_nc/*.nc' % month
out_path = '/gpfs/wolf/atm124/proj-shared/gucxprecipradarS2.00/glue_files/%s_glued/' % month
out_path = '/gpfs/wolf2/arm/atm124/proj-shared/gucxprecipradarS2_new/glue_files/%s_glued/' % month

# Define files and determine volumes
all_files = sorted(glob.glob(path))
Expand All @@ -146,8 +143,13 @@ def main(args):

if args.serial is True:
granule(volumes[0])
granule(volumes[1])
granule(volumes[2])
print("processing finished: ", time.strftime("%H:%M:%S"))
else:
cluster = LocalCluster(n_workers=20, processes=True, threads_per_worker=1)
print("starting dask cluster...")
cluster = LocalCluster(n_workers=32, threads_per_worker=1)
print(cluster)
with Client(cluster) as c:
results = c.map(granule, volumes)
wait(results)
Expand All @@ -167,7 +169,7 @@ def main(args):
default=False,
dest='serial',
type=bool,
help="Process in Serial"
help="Process in Serial for testing"
)
args = parser.parse_args()

Expand Down
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