Merge pull request #41 from AdamTheisen/workflow

ENH: Updating workflows

.github/workflows/antivirus.yml

@@ -0,0 +1,14 @@
+on:
+  pull_request:
+    types: [assigned, opened, synchronize, reopened, closed]
+
+jobs:
+  gitavscan:
+    runs-on: ubuntu-latest
+    name: AV scan
+    steps:
+    - uses: actions/checkout@v3
+    - name: Git AV Scan
+      uses: djdefi/gitavscan@main
+      with:
+        full: '--full'

.github/workflows/codeql-analysis.yml

@@ -13,13 +13,17 @@ name: "CodeQL"
 
 on:
   push:
-    branches: [ master ]
+    branches: [ main ]
   pull_request:
     # The branches below must be a subset of the branches above
-    branches: [ master ]
+    branches: [ main ]
   schedule:
     - cron: '37 14 * * 4'
 
+concurrency:
+  group: ${{ github.workflow }}-${{ github.ref }}
+  cancel-in-progress: true
+
 jobs:
   analyze:
     name: Analyze

.github/workflows/documentation.yml

@@ -1,14 +1,20 @@
 name: Build and Deploy
+
 on:
   push:
     branches:
-      master
+      - main
+
+concurrency:
+  group: ${{ github.workflow }}-${{ github.ref }}
+  cancel-in-progress: true
+
 jobs:
   build-and-deploy:
     runs-on: ubuntu-latest
     strategy:
       matrix:
-        python-version: [3.7]
+        python-version: ["3.10"]
     steps:
       - name: Checkout 🛎️
         uses: actions/[email protected]

.github/workflows/pythonpackage.yml

@@ -1,37 +1,57 @@
-name: RadTRAQ
+name: Python Package using Conda
 
 on:
+  push:
+    branches: [ main ]
   pull_request:
-    types: [assigned, opened, synchronize, reopened, closed]
+    branches: [ main ]
+
+# Cancel concurrent runs
+concurrency:
+  group: ${{ github.workflow }}-${{ github.ref }}
+  cancel-in-progress: true
 
 jobs:
   build:
-
-    runs-on: ubuntu-latest
+    name: ${{ matrix.os }}-${{ matrix.python-version }}
+    if: github.repository == 'ARM-Development/RadTraQ'
+    runs-on: ${{ matrix.os }}-latest
+    defaults:
+      run:
+        shell: bash -l {0}
     strategy:
-      max-parallel: 4
+      fail-fast: false
       matrix:
-        python-version: [3.7]
+        python-version: ["3.7", "3.8", "3.9"]
+        os: [macOS, ubuntu, Windows]
+        inlcude:
+          - os: macos-latest
+            PLAT: arm64
+            INTERFACE64: ""
+            platform: [x64]
 
     steps:
-    - uses: actions/checkout@v1
-    - name: Set up Python ${{ matrix.python-version }}
-      uses: actions/setup-python@v1
-      with:
-        python-version: ${{ matrix.python-version }}
-    - name: Install dependencies
-      run: |
-        python -m pip install --upgrade pip
-        sudo apt-get install libproj-dev proj-data proj-bin
-        sudo apt-get install libgeos-dev
-        pip install --upgrade cython numpy pyshp six
-        pip install -r requirements.txt
-    - name: Lint with flake8
-      run: |
-        pip install flake8
-        flake8 --max-line-length=115 --ignore=F401,E402,W504,W605,F403
-    - name: Test with pytest
-      run: |
-        python setup.py install
-        pip install pytest
-        pytest
+      - uses: actions/checkout@v2
+
+      - name: Setup Conda Environment
+        uses: conda-incubator/setup-miniconda@v2
+        with:
+          python-version: ${{ matrix.python-version }}
+          environment-file: ./continuous_integration/environment_actions.yml
+          activate-environment: radtraq_env
+          auto-activate-base: False
+          mamba-version: '*'
+          use-mamba: true
+          miniforge-variant: Mambaforge
+
+      - name: Lint with flake8
+        run: |
+          # stop the build if there are Python syntax errors or undefined names
+          # flake8 . --count --select=E9,F63,F7,F82 --show-source --statistics
+          # exit-zero treats all errors as warnings. The GitHub editor is 127 chars wide
+          # flake8 . --count --exit-zero --max-complexity=10 --max-line-length=127 --statistics
+          # Switching back to original flake
+          python -m flake8 --max-line-length=127 --ignore=F401,E402,W504,W605,F403
+      - name: Test with pytest
+        run: |
+          python -m pytest --mpl --cov=radtraq/

.gitignore

@@ -104,3 +104,6 @@ venv.bak/
 
 # mypy
 .mypy_cache/
+
+#vim
+*.swp

continuous_integration/environment_actions.yml

@@ -0,0 +1,20 @@
+# Basic environment for ACT.
+name: radtraq_env
+channels:
+  - conda-forge
+  - defaults
+dependencies:
+  - numpy
+  - scipy
+  - xarray
+  - matplotlib
+  - cython
+  - netcdf4
+  - act-atmos
+  - pint
+  - flake8
+  - pytest
+  - pytest-cov
+  - pytest-mpl
+  - coveralls
+  - pip