Merge pull request #4 from raphenya/main

adds script to get card data #1
AMR-Hackathon-2021 · Oct 11, 2021 · f59dbd5 · f59dbd5
2 parents 15e3476 + e84b8d2
commit f59dbd5
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diff --git a/get_reference_data/README b/get_reference_data/README
@@ -0,0 +1 @@
+# grab data from CARD database
diff --git a/get_reference_data/get_card_data.sh b/get_reference_data/get_card_data.sh
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+# grab card cannonical data
+echo "=================================== DOWNLOAD CARD CANONICAL DATA ==================================="
+# get latest card database
+wget -O data --no-check-certificate https://card.mcmaster.ca/latest/data
+mkdir -p card_data
+tar xf data -C card_data
+rm data
+
+echo "=================================== DOWNLOAD CARD VARIANTS DATA ==================================="
+wget -O variants --no-check-certificate https://card.mcmaster.ca/latest/variants
+mkdir -p card_variants
+tar xf variants -C card_variants
+gunzip card_variants/*.gz
+rm variants