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POC-610: DQA Report Update #1355

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merged 5 commits into from
Jan 11, 2024
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POC-610: DQA Report Update #1355

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3a781a4
[bug-fix]: fixed missing blood pressure values in the DQA chart
henrykorir Dec 19, 2023
82df81b
[fix]: added check for bp starting from end date going back
henrykorir Dec 19, 2023
4f6c173
POC-610: added sql logic to get nascop dqa columns
henrykorir Jan 5, 2024
ad64510
POC-610: DQA Report Update
henrykorir Jan 11, 2024
f5c9e0c
POC-610: DQA Report Update
henrykorir Jan 11, 2024
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249 changes: 160 additions & 89 deletions reports/DQA/dqa-chart-abstraction-report-dao.js
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Original file line number Diff line number Diff line change
Expand Up @@ -28,102 +28,173 @@ export class DQAChartAbstractionDAO {
limit === 'all' ? '' : `limit ` + limit + ` offset ` + offset;
let sqlQuery =
`
SELECT
h.person_uuid as uuid,
cc.identifier as ccc_number,
np.identifier as upi_number,
ov.identifier as ovcid_id,
EXTRACT(YEAR FROM (FROM_DAYS(DATEDIFF(NOW(), h.birthdate)))) AS age,
IF( date(h.tb_screening_datetime) > date_sub(h.endDate, interval 6 month),"YES","NO") as tb_screened_this_visit,
h.gender as 'sex_gender',
e.height,
e.weight,
DATE_FORMAT(h.birthdate,'%Y-%m-%d') AS birthdate,
h.encounter_id,
DATE_FORMAT(h.encounter_date,'%Y-%m-%d') as last_appointment_date,
h.rtc_date,
h.location_id,
h.cur_arv_meds,
h.tb_screen,
h.tb_screening_datetime,
e.hiv_start_date,
h.arv_start_date,
e.cd4_1,
ls.encounter_datetime AS last_clinical_encounter,
DATE_FORMAT(h.rtc_date,'%Y-%m-%d') as next_appointment,
h.vl_1,
case
when e.weight is not null and e.height is not null then 'YES'
else 'NO'
end as nutrition,
case
when e.visit_type in (37,58) then 'CARG'
when e.visit_type in (43,80,104,118,120,123) then 'Treatment Supporter'
else 'Self'
end as visit_type,
h.cur_arv_meds_names AS drugs_given,
case
when e.height is not null and e.weight is not null then e.weight/((e.height/100) * (e.height/100))
else null
end as BMI,
IF(p.program_id = 9, 'DC', 'Standard') AS DSD,
TIMESTAMPDIFF(DAY,h.encounter_date,h.rtc_date) AS drugs_duration,
IF(h.ipt_start_date = h.encounter_date,
1,
0) AS ipt_started_this_visit,
DATE_FORMAT(h.ipt_start_date,'%Y-%m-%d') AS last_ipt_start_date,
case
when e.on_ipt = 1 then 'CONTINUING'
when e.ipt_completion_date is null and e.ipt_stop_date is not null then 'DISCONTINUED'
when e.ipt_completion_date is not null
SELECT
h.person_uuid as uuid,
-- cc.identifier as ccc_number,
-- np.identifier as upi_number,
-- ov.identifier as ovcid_id,
max(case WHEN id.identifier_type in (28) then id.identifier end) AS ccc_number,
max(case WHEN id.identifier_type in (43) then id.identifier end) AS ovc_number,
max(case WHEN id.identifier_type in (45) then id.identifier end) AS upi_number,
EXTRACT(YEAR FROM (FROM_DAYS(DATEDIFF(NOW(), h.birthdate)))) AS age,
IF( date(h.tb_screening_datetime) > date_sub(h.endDate, interval 6 month),
"YES",
"NO") as tb_screened_this_visit,
h.gender as 'sex_gender',
e.height,
e.weight,
DATE_FORMAT(h.birthdate, '%Y-%m-%d') AS birthdate,
h.encounter_id,
DATE_FORMAT(h.encounter_date, '%Y-%m-%d') as last_appointment_date,
h.rtc_date,
h.location_id,
h.cur_arv_meds,
h.tb_screen,
h.tb_screening_datetime,
e.hiv_start_date,
h.arv_start_date,
e.cd4_1,
-- ls.encounter_datetime AS last_clinical_encounter,
e.encounter_datetime AS last_clinical_encounter,
DATE_FORMAT(h.rtc_date, '%Y-%m-%d') as next_appointment,
h.vl_1,
case
when e.weight is not null
and e.height is not null then 'YES'
else 'NO'
end as nutrition,
case
when e.visit_type in (37, 58) then 'CARG'
when e.visit_type in (43, 80, 104, 118, 120, 123) then 'Treatment Supporter'
else 'Self'
end as visit_type,
h.cur_arv_meds_names AS drugs_given,
case
when e.height is not null
and e.weight is not null then e.weight /((e.height / 100) * (e.height / 100))
else null
end as BMI,
IF(p.program_id = 9,
'DC',
'Standard') AS DSD,
TIMESTAMPDIFF(DAY,
h.encounter_date,
h.rtc_date) AS drugs_duration,
IF(h.ipt_start_date = h.encounter_date,
1,
0) AS ipt_started_this_visit,
DATE_FORMAT(h.ipt_start_date, '%Y-%m-%d') AS last_ipt_start_date,
case
when e.on_ipt = 1 then 'CONTINUING'
when e.ipt_completion_date is null
and e.ipt_stop_date is not null then 'DISCONTINUED'
when e.ipt_completion_date is not null
then 'COMPLETED'
else 'NA'
end as tpt_status,
h.ipt_stop_date,
h.ipt_completion_date,
IF(h.ipt_stop_date = h.encounter_date
OR h.ipt_completion_date = h.encounter_date,
1,
0) AS ipt_ended_this_visit,fv.systolic_bp as sysBP,fv.diastolic_bp as dysBP
FROM
etl.hiv_monthly_report_dataset_frozen h
LEFT JOIN
etl.flat_hiv_summary_v15b e on (h.encounter_id=e.encounter_id)
LEFT JOIN
etl.flat_hiv_summary_v15b ls on (ls.next_clinical_datetime_hiv is null and ls.person_id=e.person_id)
left JOIN (SELECT fv.person_id,
fv.systolic_bp,
fv.diastolic_bp,
MAX(fv.encounter_datetime) AS max_date
FROM etl.flat_vitals fv where diastolic_bp is not null
GROUP BY fv.person_id,fv.encounter_datetime order by fv.encounter_datetime desc limit 1) fv ON e.person_id = fv.person_id
INNER JOIN
amrs.person t1 ON (h.person_id = t1.person_id)
INNER JOIN
amrs.person_name person_name ON (t1.person_id = person_name.person_id AND (person_name.voided = 0 || person_name.voided = 0))
LEFT JOIN
amrs.patient_identifier id ON (t1.person_id = id.patient_id AND id.voided = 0)
LEFT JOIN
amrs.patient_identifier cc ON (t1.person_id = cc.patient_id and cc.identifier_type in (28) AND cc.voided = 0)
LEFT JOIN
amrs.patient_identifier ov ON (t1.person_id = ov.patient_id and ov.identifier_type in (43) AND ov.voided = 0)
LEFT JOIN
amrs.patient_identifier np ON (t1.person_id = np.patient_id and np.identifier_type in (45) AND np.voided = 0)
left join amrs.patient_program p on (p.patient_id = h.person_id and p.program_id in (4,9) and p.date_completed is null and p.voided = 0)
WHERE h.status = "active" and visit_this_month=1
AND h.endDate >= '` +
else 'NA'
end as tpt_status,
h.ipt_stop_date,
h.ipt_completion_date,
e.cur_who_stage,
e.cd4_1,
fv.muac,
IF(h.ipt_stop_date = h.encounter_date
OR h.ipt_completion_date = h.encounter_date,
1,
0) AS ipt_ended_this_visit,
fv.systolic_bp as sysBP,
fv.diastolic_bp as dysBP,
h.status,
IF((o.value_coded IS NULL), 'NO', 'YES') AS is_crag_screened,
case
when (h.vl_1 < 200) then 'suppressed'
when (h.vl_1 >= 200) then 'unsuppressed'
end as vl_suppression,
case
when (e.tb_screening_result = 6971) then 'Pr TB'
when (e.tb_screening_result = 6137) then 'Confirmed'
when (e.tb_screening_result = 1107 OR e.tb_screening_result = 10678) then 'No TB'
when (e.tb_screening_result = 10767) then 'TB Rx'
when (e.tb_screening_result = 10974) then 'INH'
end as tb_screening_result
FROM
etl.hiv_monthly_report_dataset_v1_2 h
LEFT JOIN
etl.flat_hiv_summary_v15b e on
(h.encounter_id = e.encounter_id)
-- LEFT JOIN
-- etl.flat_hiv_summary_v15b ls on
-- (ls.next_clinical_datetime_hiv is null
-- and ls.person_id = e.person_id)
left JOIN (
SELECT
*,
MAX(encounter_datetime) AS max_date
FROM
etl.flat_vitals
WHERE
-- systolic_bp IS NOT NULL
-- AND diastolic_bp IS NOT NULL
-- AND
encounter_datetime <= '` +
endDate +
`'
GROUP BY
person_id ,
encounter_datetime
ORDER BY
encounter_datetime) fv ON
e.person_id = fv.person_id
INNER JOIN
amrs.person t1 ON
(h.person_id = t1.person_id)
INNER JOIN
amrs.person_name person_name ON
(t1.person_id = person_name.person_id
AND (person_name.voided = 0))
INNER JOIN
amrs.patient_identifier id ON
(t1.person_id = id.patient_id
AND id.voided = 0)
-- INNER JOIN
-- amrs.patient_identifier cc ON
-- (t1.person_id = cc.patient_id
-- and cc.identifier_type in (28)
-- AND cc.voided = 0)
-- LEFT JOIN
-- amrs.patient_identifier ov ON
-- (t1.person_id = ov.patient_id
-- and ov.identifier_type in (43)
-- AND ov.voided = 0)
-- LEFT JOIN
-- amrs.patient_identifier np ON
-- (t1.person_id = np.patient_id
-- and np.identifier_type in (45)
-- AND np.voided = 0)
left join amrs.patient_program p on
(p.patient_id = h.person_id
and p.program_id in (4, 9)
and p.date_completed is null
and p.voided = 0)
LEFT JOIN amrs.obs o ON
(o.encounter_id = h.encounter_id
AND o.person_id = h.person_id and o.concept_id = 9812 and o.voided = 0)
WHERE
h.endDate >= '` +
startDate +
`'
AND h.endDate <= '` +
AND h.endDate <= '` +
endDate +
`'
AND h.location_id IN (` +
AND h.location_id IN (` +
locations +
`) AND ` +
`)
AND ` +
where +
`
GROUP BY h.person_id
ORDER BY RAND() DESC ` +
`
GROUP BY
h.person_id
ORDER BY
RAND() DESC ` +
limitOffSetDefinition;

return new Promise((resolve, reject) => {
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