Rename repo

AIM-Harvard · Sep 15, 2022 · 7382d33 · 7382d33
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diff --git a/README.md b/README.md
@@ -1,2 +1,3 @@
-# alpha_aime
-Alpha for AIME.
+# AIME
+
+Alpha version of the AIMI project.
diff --git a/aime/__init__.py → aimi/__init__.py b/aime/__init__.py → aimi/__init__.py
diff --git a/aime/contrast_detection/README.md → aimi/contrast_detection/README.md b/aime/contrast_detection/README.md → aimi/contrast_detection/README.md
diff --git a/aime/contrast_detection/__init__.py → aimi/contrast_detection/__init__.py b/aime/contrast_detection/__init__.py → aimi/contrast_detection/__init__.py
diff --git a/aime/contrast_detection/utils/__init__.py → aimi/contrast_detection/utils/__init__.py b/aime/contrast_detection/utils/__init__.py → aimi/contrast_detection/utils/__init__.py
diff --git a/...ontrast_detection/utils/postprocessing.py → ...ontrast_detection/utils/postprocessing.py b/...ontrast_detection/utils/postprocessing.py → ...ontrast_detection/utils/postprocessing.py
diff --git a/...contrast_detection/utils/preprocessing.py → ...contrast_detection/utils/preprocessing.py b/...contrast_detection/utils/preprocessing.py → ...contrast_detection/utils/preprocessing.py
diff --git a/aime/contrast_detection/utils/processing.py → aimi/contrast_detection/utils/processing.py b/aime/contrast_detection/utils/processing.py → aimi/contrast_detection/utils/processing.py
diff --git a/aime/general_utils/__init__.py → aimi/general_utils/__init__.py b/aime/general_utils/__init__.py → aimi/general_utils/__init__.py
diff --git a/aime/general_utils/config.py → aimi/general_utils/config.py b/aime/general_utils/config.py → aimi/general_utils/config.py
diff --git a/aime/general_utils/gcs.py → aimi/general_utils/gcs.py b/aime/general_utils/gcs.py → aimi/general_utils/gcs.py
diff --git a/aime/general_utils/preprocessing.py → aimi/general_utils/preprocessing.py b/aime/general_utils/preprocessing.py → aimi/general_utils/preprocessing.py
diff --git a/aime/nnunet_abdominal_oar/README.md → aimi/nnunet_abdominal_oar/README.md b/aime/nnunet_abdominal_oar/README.md → aimi/nnunet_abdominal_oar/README.md
diff --git a/aime/nnunet_abdominal_oar/__init__.py → aimi/nnunet_abdominal_oar/__init__.py b/aime/nnunet_abdominal_oar/__init__.py → aimi/nnunet_abdominal_oar/__init__.py
diff --git a/...dominal_oar/config/dicomseg_metadata.json → ...dominal_oar/config/dicomseg_metadata.json b/...dominal_oar/config/dicomseg_metadata.json → ...dominal_oar/config/dicomseg_metadata.json
diff --git a/.../notebooks/nnunet_abdominal_oar_mwe.ipynb → .../notebooks/nnunet_abdominal_oar_mwe.ipynb b/.../notebooks/nnunet_abdominal_oar_mwe.ipynb → .../notebooks/nnunet_abdominal_oar_mwe.ipynb
diff --git a/aime/nnunet_abdominal_oar/utils/__init__.py → aimi/nnunet_abdominal_oar/utils/__init__.py b/aime/nnunet_abdominal_oar/utils/__init__.py → aimi/nnunet_abdominal_oar/utils/__init__.py
diff --git a/...net_abdominal_oar/utils/postprocessing.py → ...net_abdominal_oar/utils/postprocessing.py b/...net_abdominal_oar/utils/postprocessing.py → ...net_abdominal_oar/utils/postprocessing.py
diff --git a/.../nnunet_abdominal_oar/utils/processing.py → .../nnunet_abdominal_oar/utils/processing.py b/.../nnunet_abdominal_oar/utils/processing.py → .../nnunet_abdominal_oar/utils/processing.py
diff --git a/aime/nnunet_nsclc/__init__.py → aimi/nnunet_nsclc/__init__.py b/aime/nnunet_nsclc/__init__.py → aimi/nnunet_nsclc/__init__.py
diff --git a/aime/nnunet_pancreas/README.md → aimi/nnunet_pancreas/README.md b/aime/nnunet_pancreas/README.md → aimi/nnunet_pancreas/README.md
diff --git a/aime/nnunet_pancreas/__init__.py → aimi/nnunet_pancreas/__init__.py b/aime/nnunet_pancreas/__init__.py → aimi/nnunet_pancreas/__init__.py
diff --git a/...unet_pancreas/config/dicomseg_config.json → ...unet_pancreas/config/dicomseg_config.json b/...unet_pancreas/config/dicomseg_config.json → ...unet_pancreas/config/dicomseg_config.json
diff --git a/aime/nnunet_pancreas/notebooks/README.md → aimi/nnunet_pancreas/notebooks/README.md b/aime/nnunet_pancreas/notebooks/README.md → aimi/nnunet_pancreas/notebooks/README.md
diff --git a/...s/notebooks/idc_nnunet_pancreas_mwe.ipynb → ...s/notebooks/idc_nnunet_pancreas_mwe.ipynb b/...s/notebooks/idc_nnunet_pancreas_mwe.ipynb → ...s/notebooks/idc_nnunet_pancreas_mwe.ipynb
diff --git a/aime/nnunet_pancreas/utils/__init__.py → aimi/nnunet_pancreas/utils/__init__.py b/aime/nnunet_pancreas/utils/__init__.py → aimi/nnunet_pancreas/utils/__init__.py
diff --git a/aime/nnunet_pancreas/utils/postprocessing.py → aimi/nnunet_pancreas/utils/postprocessing.py b/aime/nnunet_pancreas/utils/postprocessing.py → aimi/nnunet_pancreas/utils/postprocessing.py
diff --git a/aime/nnunet_pancreas/utils/processing.py → aimi/nnunet_pancreas/utils/processing.py b/aime/nnunet_pancreas/utils/processing.py → aimi/nnunet_pancreas/utils/processing.py
diff --git a/aime/nnunet_segthor/__init__.py → aimi/nnunet_segthor/__init__.py b/aime/nnunet_segthor/__init__.py → aimi/nnunet_segthor/__init__.py
diff --git a/aime/platipy/__init__.py → aimi/platipy/__init__.py b/aime/platipy/__init__.py → aimi/platipy/__init__.py
diff --git a/aime/platipy/config/default_config.json → aimi/platipy/config/default_config.json b/aime/platipy/config/default_config.json → aimi/platipy/config/default_config.json
diff --git a/aime/platipy/config/dicomseg_metadata.json → aimi/platipy/config/dicomseg_metadata.json b/aime/platipy/config/dicomseg_metadata.json → aimi/platipy/config/dicomseg_metadata.json
diff --git a/aime/platipy/notebooks/platipy_mwe.ipynb → aimi/platipy/notebooks/platipy_mwe.ipynb b/aime/platipy/notebooks/platipy_mwe.ipynb → aimi/platipy/notebooks/platipy_mwe.ipynb
diff --git a/aime/platipy/utils/__init__.py → aimi/platipy/utils/__init__.py b/aime/platipy/utils/__init__.py → aimi/platipy/utils/__init__.py
diff --git a/aime/platipy/utils/postprocessing.py → aimi/platipy/utils/postprocessing.py b/aime/platipy/utils/postprocessing.py → aimi/platipy/utils/postprocessing.py
diff --git a/aime/platipy/utils/processing.py → aimi/platipy/utils/processing.py b/aime/platipy/utils/processing.py → aimi/platipy/utils/processing.py
diff --git a/aime/totalsegmentator/__init__.py → aimi/totalsegmentator/__init__.py b/aime/totalsegmentator/__init__.py → aimi/totalsegmentator/__init__.py
diff --git a/...segmentator/config/dicomseg_metadata.json → ...segmentator/config/dicomseg_metadata.json b/...segmentator/config/dicomseg_metadata.json → ...segmentator/config/dicomseg_metadata.json
diff --git a/...gmentator/config/dicomseg_metadata_2.json → ...gmentator/config/dicomseg_metadata_2.json b/...gmentator/config/dicomseg_metadata_2.json → ...gmentator/config/dicomseg_metadata_2.json