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Fixed are.md file
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atteggiani committed May 2, 2024
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### Session options
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Launching an ARE session is similar to submitting an interactive [PBS job](https://opus.nci.org.au/display/Help/4.+PBS+Jobs) that enables you to connect to a _Gadi_ computing node.<br>
Therefore, there are multiple [PBS directives](https://opus.nci.org.au/display/Help/PBS+Directives+Explained) and other options you can select:

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Launching an ARE session is similar to submitting an interactive <a href="https://opus.nci.org.au/display/Help/4.+PBS+Jobs" target="_blank">PBS job</a> that enables you to connect to a <i>Gadi</i> computing node.
<br>
Therefore, there are multiple <a href="https://opus.nci.org.au/display/Help/PBS+Directives+Explained" target="_blank">PBS directives</a> and other options you can select:
<ul>
<li>
<b id="walltime-option">Walltime (hours)</b>
<br>
Number of hours your VDI session will run for (unless manually ended earlier).
<br>
The maximum number of hours an ARE session can run for depends on the selected Queue. For more information, check <a href="https://opus.nci.org.au/display/Help/Queue+Limits" target="_blank">Gadi Queue Limits</a>.
<div class='admonition warning'>
Once the session ends any operation still in progress on the session's computing node(s) will be immediately terminated.
</div>
</li>
<li>
<b>Queue</b>
<br>
Gadi queue that your session will be scheduled in. For more information check <a href="https://opus.nci.org.au/display/Help/Queue+Structure" target="_blank">Gadi Queue Structure</a>.
</li>
<li>
<b>Compute Size</b>
<br>
Amount of resources (CPUs, Memory, etc.) available to your session.
<br>
You can either choose a pre-configured option, or select a custom one (e.g., <i>cpus=6 mem=40G</i>).
</li>
<li>
<b>Project</b>
<br>
The NCI project the ARE session will be charged to.
<br>
You must be a member of the specified project.
<div class='admonition warning'>
The specified project must have allocated <i>Service Units</i> (SU).
<br>
For more information, check <a href="/getting_started/first_steps#join-relevant-nci-projects">how to join relevant NCI projects</a>.
</div>
</li>
<li>
<b id="storage-option">Storage</b>
<br>
<code>/g/data</code> (inserted as <i>gdata/&lt;project-ID&gt;</i>) and <code>/scratch</code> (inserted as <i>scratch/&lt;project-ID&gt;</i>) data storage projects that will be available to the session.
<br>
In ARE, data storage locations need to be explicitly defined. This means that you need to insert any <code>/g/data</code> and <code>/scratch</code> project folders you want to execute data I/O operations from.
<br>
Multiple storage projects are separated by a plus (<i>+</i>) (e.g., <i>gdata/tm70+gdata/hh5+scratch/xp65</i>).
<div class='admonition warning'>
Generally, you need to be a member of the specified projects to access their storage data.
<br>
If you try to access data from a project folder not included in the session's storage, you will get an error similar to the following:
<br>
<code>&lt;cmd&gt;: cannot access '&lt;/path/to/file&gt;': No such file or directory</code>
</div>
</li>
<li>
<b>Software</b>
<br>
Software licenses that are requested for your ARE session. Leave blank if no license needed.
<br>
Multiple licenses are separated by a colon (<i>:</i>).
</li>
<h4>Advanced options</h4>
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<li>
<b>Extra arguments</b>
<br>
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