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Missing import and exception handling #9

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Missing import and exception handling #9

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eaddb6b
Fix Relion job exit status handling
Poko18 Dec 15, 2023
9adfbb2
missing import
Poko18 Dec 15, 2023
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6 changes: 4 additions & 2 deletions dynamight/inverse_deformations/optimize_inverse_deformations.py
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Original file line number Diff line number Diff line change
Expand Up @@ -12,7 +12,7 @@
from ..models.blocks import LinearBlock
from ..models.decoder import InverseDisplacementDecoder
from ..utils.utils_new import initialize_dataset, add_weight_decay_to_named_parameters
from ..data.dataloaders.relion import RelionDataset, abort_if_relion_abort, write_relion_job_exit_status
from ..data.dataloaders.relion import RelionDataset, abort_if_relion_abort, write_relion_job_exit_status, is_relion_abort
from ._optimize_single_epoch import optimize_epoch
from tqdm import tqdm
from .._cli import cli
Expand Down Expand Up @@ -232,7 +232,9 @@ def optimize_inverse_deformations(

write_relion_job_exit_status(
output_directory, 'SUCCESS', pipeline_control)
except:

except Exception as e:
print(e)
if is_relion_abort(output_directory) == False:
write_relion_job_exit_status(
output_directory, 'FAILURE', pipeline_control)