removed irrelevant dependencies

.gitignore

@@ -4,3 +4,4 @@
 /Manifest.toml
 /docs/Manifest.toml
 /docs/build/
+.DS_Store

Manifest.toml

@@ -2,7 +2,7 @@
 
 julia_version = "1.11.1"
 manifest_format = "2.0"
-project_hash = "d7ad68b212073c8b4416a9ad3a1a0dc67d7fc840"
+project_hash = "3a1bdc928e741ea648cfbe487012ab30411c4c0c"
 
 [[deps.AbstractFFTs]]
 deps = ["LinearAlgebra"]
@@ -202,12 +202,6 @@ git-tree-sha1 = "ea32b83ca4fefa1768dc84e504cc0a94fb1ab8d1"
 uuid = "f0e56b4a-5159-44fe-b623-3e5288b988bb"
 version = "2.4.2"
 
-[[deps.Conda]]
-deps = ["Downloads", "JSON", "VersionParsing"]
-git-tree-sha1 = "b19db3927f0db4151cb86d073689f2428e524576"
-uuid = "8f4d0f93-b110-5947-807f-2305c1781a2d"
-version = "1.10.2"
-
 [[deps.ConstructionBase]]
 git-tree-sha1 = "76219f1ed5771adbb096743bff43fb5fdd4c1157"
 uuid = "187b0558-2788-49d3-abe0-74a17ed4e7c9"
@@ -255,12 +249,6 @@ git-tree-sha1 = "bfc1187b79289637fa0ef6d4436ebdfe6905cbd6"
 uuid = "e2d170a0-9d28-54be-80f0-106bbe20a464"
 version = "1.0.0"
 
-[[deps.DataValues]]
-deps = ["DataValueInterfaces", "Dates"]
-git-tree-sha1 = "d88a19299eba280a6d062e135a43f00323ae70bf"
-uuid = "e7dc6d0d-1eca-5fa6-8ad6-5aecde8b7ea5"
-version = "0.4.13"
-
 [[deps.Dates]]
 deps = ["Printf"]
 uuid = "ade2ca70-3891-5945-98fb-dc099432e06a"
@@ -683,12 +671,6 @@ version = "0.16.5"
     SparseArrays = "2f01184e-e22b-5df5-ae63-d93ebab69eaf"
     SymEngine = "123dc426-2d89-5057-bbad-38513e3affd8"
 
-[[deps.Lazy]]
-deps = ["MacroTools"]
-git-tree-sha1 = "1370f8202dac30758f3c345f9909b97f53d87d3f"
-uuid = "50d2b5c4-7a5e-59d5-8109-a42b560f39c0"
-version = "0.15.1"
-
 [[deps.LazyArtifacts]]
 deps = ["Artifacts", "Pkg"]
 uuid = "4af54fe1-eca0-43a8-85a7-787d91b784e3"
@@ -965,12 +947,6 @@ git-tree-sha1 = "949347156c25054de2db3b166c52ac4728cbad65"
 uuid = "90014a1f-27ba-587c-ab20-58faa44d9150"
 version = "0.11.31"
 
-[[deps.Pandas]]
-deps = ["Compat", "DataValues", "Dates", "IteratorInterfaceExtensions", "Lazy", "OrderedCollections", "Pkg", "PyCall", "Statistics", "TableTraits", "TableTraitsUtils", "Tables"]
-git-tree-sha1 = "0ccb570180314e4dfa3ad81e49a3df97e1913dc2"
-uuid = "eadc2687-ae89-51f9-a5d9-86b5a6373a9c"
-version = "1.6.1"
-
 [[deps.Pango_jll]]
 deps = ["Artifacts", "Cairo_jll", "Fontconfig_jll", "FreeType2_jll", "FriBidi_jll", "Glib_jll", "HarfBuzz_jll", "JLLWrappers", "Libdl"]
 git-tree-sha1 = "e127b609fb9ecba6f201ba7ab753d5a605d53801"
@@ -1087,18 +1063,6 @@ git-tree-sha1 = "77a42d78b6a92df47ab37e177b2deac405e1c88f"
 uuid = "43287f4e-b6f4-7ad1-bb20-aadabca52c3d"
 version = "1.2.1"
 
-[[deps.PyCall]]
-deps = ["Conda", "Dates", "Libdl", "LinearAlgebra", "MacroTools", "Serialization", "VersionParsing"]
-git-tree-sha1 = "9816a3826b0ebf49ab4926e2b18842ad8b5c8f04"
-uuid = "438e738f-606a-5dbb-bf0a-cddfbfd45ab0"
-version = "1.96.4"
-
-[[deps.PyPlot]]
-deps = ["Colors", "LaTeXStrings", "PyCall", "Sockets", "Test", "VersionParsing"]
-git-tree-sha1 = "0371ca706e3f295481cbf94c8c36692b072285c2"
-uuid = "d330b81b-6aea-500a-939a-2ce795aea3ee"
-version = "2.11.5"
-
 [[deps.Qt6Base_jll]]
 deps = ["Artifacts", "CompilerSupportLibraries_jll", "Fontconfig_jll", "Glib_jll", "JLLWrappers", "Libdl", "Libglvnd_jll", "OpenSSL_jll", "Vulkan_Loader_jll", "Xorg_libSM_jll", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Xorg_libxcb_jll", "Xorg_xcb_util_cursor_jll", "Xorg_xcb_util_image_jll", "Xorg_xcb_util_keysyms_jll", "Xorg_xcb_util_renderutil_jll", "Xorg_xcb_util_wm_jll", "Zlib_jll", "libinput_jll", "xkbcommon_jll"]
 git-tree-sha1 = "492601870742dcd38f233b23c3ec629628c1d724"
@@ -1212,12 +1176,6 @@ git-tree-sha1 = "3bac05bc7e74a75fd9cba4295cde4045d9fe2386"
 uuid = "6c6a2e73-6563-6170-7368-637461726353"
 version = "1.2.1"
 
-[[deps.Seaborn]]
-deps = ["Pandas", "PyCall", "PyPlot", "Reexport", "Test"]
-git-tree-sha1 = "c7d0011bfb487a40501ad9383e24f1908809e1ed"
-uuid = "d2ef9438-c967-53ab-8060-373fdd9e13eb"
-version = "1.1.1"
-
 [[deps.SentinelArrays]]
 deps = ["Dates", "Random"]
 git-tree-sha1 = "ff11acffdb082493657550959d4feb4b6149e73a"
@@ -1394,12 +1352,6 @@ git-tree-sha1 = "c06b2f539df1c6efa794486abfb6ed2022561a39"
 uuid = "3783bdb8-4a98-5b6b-af9a-565f29a5fe9c"
 version = "1.0.1"
 
-[[deps.TableTraitsUtils]]
-deps = ["DataValues", "IteratorInterfaceExtensions", "Missings", "TableTraits"]
-git-tree-sha1 = "78fecfe140d7abb480b53a44f3f85b6aa373c293"
-uuid = "382cd787-c1b6-5bf2-a167-d5b971a19bda"
-version = "1.0.2"
-
 [[deps.Tables]]
 deps = ["DataAPI", "DataValueInterfaces", "IteratorInterfaceExtensions", "OrderedCollections", "TableTraits"]
 git-tree-sha1 = "598cd7c1f68d1e205689b1c2fe65a9f85846f297"
@@ -1477,11 +1429,6 @@ git-tree-sha1 = "ca0969166a028236229f63514992fc073799bb78"
 uuid = "41fe7b60-77ed-43a1-b4f0-825fd5a5650d"
 version = "0.2.0"
 
-[[deps.VersionParsing]]
-git-tree-sha1 = "58d6e80b4ee071f5efd07fda82cb9fbe17200868"
-uuid = "81def892-9a0e-5fdd-b105-ffc91e053289"
-version = "1.3.0"
-
 [[deps.Vulkan_Loader_jll]]
 deps = ["Artifacts", "JLLWrappers", "Libdl", "Wayland_jll", "Xorg_libX11_jll", "Xorg_libXrandr_jll", "xkbcommon_jll"]
 git-tree-sha1 = "2f0486047a07670caad3a81a075d2e518acc5c59"

Project.toml

@@ -11,11 +11,8 @@ LaTeXStrings = "b964fa9f-0449-5b57-a5c2-d3ea65f4040f"
 Optim = "429524aa-4258-5aef-a3af-852621145aeb"
 Plots = "91a5bcdd-55d7-5caf-9e0b-520d859cae80"
 ProgressBars = "49802e3a-d2f1-5c88-81d8-b72133a6f568"
-PyCall = "438e738f-606a-5dbb-bf0a-cddfbfd45ab0"
-PyPlot = "d330b81b-6aea-500a-939a-2ce795aea3ee"
 Random = "9a3f8284-a2c9-5f02-9a11-845980a1fd5c"
 RecipesBase = "3cdcf5f2-1ef4-517c-9805-6587b60abb01"
-Seaborn = "d2ef9438-c967-53ab-8060-373fdd9e13eb"
 StatsBase = "2913bbd2-ae8a-5f71-8c99-4fb6c76f3a91"
 StatsPlots = "f3b207a7-027a-5e70-b257-86293d7955fd"
 Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f"
@@ -28,11 +25,8 @@ LaTeXStrings = "1.4.0"
 Optim = "1.9.4"
 Plots = "1.40.8"
 ProgressBars = "1.5.1"
-PyCall = "1.96.4"
-PyPlot = "2.11.5"
 Random = "1.11.0"
 RecipesBase = "1.3.4"
-Seaborn = "1.1.1"
 StatsBase = "0.34.3"
 StatsPlots = "0.15.7"
 Zygote = "0.6.72"

README.md

@@ -5,7 +5,7 @@
 [![Build Status](https://github.com/162348/PDMPFlux.jl/actions/workflows/CI.yml/badge.svg?branch=main)](https://github.com/162348/PDMPFlux.jl/actions/workflows/CI.yml?query=branch%3Amain)
 [![Coverage](https://codecov.io/gh/162348/PDMPFlux.jl/branch/main/graph/badge.svg)](https://codecov.io/gh/162348/PDMPFlux.jl)
 
-This repository contains a `Zygote.jl` implementation of the PDMP samplers.
+This repository contains a [`Zygote.jl`](https://github.com/FluxML/Zygote.jl) implementation of the PDMP samplers.
 
 ## Examples