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customdef.tex
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\def\DATA{../../}
\def\FIGFILES{figfiles_}
\gdef\AXISCOL{gray}
\gdef\XCOLMPfifty{black}
\gdef\XCOLFPfifty{Fuchsia}
\gdef\XCOLFPfiftyh{Orchid3}
\gdef\XCOLMPsfive{Green4!80}
\gdef\XCOLFPsfive{MidnightBlue}
\gdef\XCOLMPfiftyh{teal}
\gdef\XCOLMPfiftyl{Red4}
\gdef\XCOLMPsfivel{Tomato}
\gdef\XCOLMPsfiveh{MidnightBlue}
\gdef\XCOLA{Fuchsia}
% \gdef\XCOLA{gray}
\def\XCOLA{RubineRed}
\def\XCOLB{RedOrange}
\def\XCOLBB{black!50}
\def\XCOLC{Orchid3}
\def\XCOLD{black}
\def\XCOLE{black}
\def\XCOLI{CadetBlue4}
\def\XCOLJ{DarkOrange4}
\def\XCOLIf{DodgerBlue3}
\def\XCOLJf{DarkOrange3}
\def\LCOL{black}
\gdef\CODECOL{SeaGreen2}
\gdef\CONCOL{Tomato!20}
\gdef\POSCOL{Green1!20}
\gdef\XCOL{Cyan1}
\gdef\ACOL{gray}
\gdef\BCOL{teal}
\gdef\mcor{MCoR\xspace}
\gdef\WWCOL{Red1!80}
\def\XCOLAA{Orchid2}
\gdef\LCOL{black}
\gdef\treatment{positive\xspace}
\gdef\control{control\xspace}
\def\LLK{\textbf{log-likelihood}\xspace}
\def\PHN{\textbf{feature-phenotype}\xspace}
\def\SLD{$\Delta$\xspace}
\def\TEXTCOL{gray}
\def\COLDR{white}
\definecolor{alizarin}{rgb}{0.82, 0.1, 0.26}
\definecolor{amber}{rgb}{1.0, 0.75, 0.0}
\definecolor{amethyst}{rgb}{0.6, 0.4, 0.8}
\definecolor{apricot}{rgb}{0.98, 0.81, 0.69}
\definecolor{atomictangerine}{rgb}{1.0, 0.6, 0.4}
\definecolor{awesome}{rgb}{1.0, 0.13, 0.32}
\definecolor{azurec}{rgb}{0.0, 0.5, 1.0}
\definecolor{ballblue}{rgb}{0.13, 0.67, 0.8}
\definecolor{bittersweet}{rgb}{1.0, 0.44, 0.37}
\definecolor{bluem}{rgb}{0.0, 0.5, 0.69}
\definecolor{brightturquoise}{rgb}{0.03, 0.91, 0.87}
\definecolor{fiveA}{HTML}{30a2da}
\definecolor{fiveB}{HTML}{fc4f30}
\definecolor{fiveC}{HTML}{e5ae38}
\definecolor{fiveD}{HTML}{6d904f}
\definecolor{fiveE}{HTML}{8b8b8b}
%'#e6194b', '#3cb44b', '#ffe119', '#4363d8', '#f58231', '#911eb4', '#46f0f0', '#f032e6', '#bcf60c', '#fabebe', '#008080', '#e6beff', '#9a6324', '#fffac8', '#800000', '#aaffc3', '#808000', '#ffd8b1', '#000075', '#808080', '#ffffff', '#000000'
%https://sashamaps.net/docs/resources/20-colors/
%'#e6194B', '#3cb44b', '#ffe119', '#4363d8', '#f58231', '#42d4f4', '#f032e6', '#fabed4', '#469990', '#dcbeff', '#9A6324', '#fffac8', '#800000', '#aaffc3', '#000075', '#a9a9a9', '#ffffff', '#000000'
\definecolor{twentyA}{HTML}{e6194b}
\definecolor{twentyB}{HTML}{3cb44b}
\definecolor{twentyC}{HTML}{ffe119}
\definecolor{twentyD}{HTML}{4363d8}
\definecolor{twentyE}{HTML}{f58231}
\definecolor{twentyF}{HTML}{42d4f4}
\definecolor{twentyG}{HTML}{f032e6}
\definecolor{twentyH}{HTML}{fabed4}
\definecolor{twentyI}{HTML}{469990}
\definecolor{twentyJ}{HTML}{dcbeff}
\definecolor{twentyL}{HTML}{9A6324}
\definecolor{twentyK}{HTML}{eeeac8}
\definecolor{twentyM}{HTML}{800000}
\definecolor{twentyN}{HTML}{aaffc3}
\definecolor{twentyO}{HTML}{000075}
\definecolor{twentyP}{HTML}{a9a9a9}
\definecolor{twentyQ}{HTML}{808000}
\definecolor{twentyR}{HTML}{ffd8b1}
\definecolor{twentyS}{HTML}{000000}
\def\CINF{twentyA}
\def\CIMM{twentyB}
\def\CSKN{twentyC}
\def\CEYE{twentyD}
\def\COTC{twentyE}
\def\CCIR{twentyF}
\def\CBLD{twentyG}
\def\CMSK{twentyH}
\def\CDIG{twentyI}
\def\CRSP{twentyJ}
\def\CGNT{twentyK}
\def\CNEO{twentyL}
\def\CMNT{twentyM}
\def\CNRV{twentyN}
\def\CCNT{twentyO}
\def\CPRI{twentyP}
\def\CINJ{twentyS}
\def\CEXT{twentyR}
\def\CILL{twentyQ}
\def\CSTA{LimeGreen}
\def\TITLE{}
\def\TITLE{LukinGlas: An AI for Predicting Future Mutations of Novel Pathogens Enabling Escape-resistant Vaccine Design}
\def\authora{Dmytro Onishchenko}
%\def\authorb{author2}
%\def\authorc{author3}
\def\authore{James A. Mastrianni}
\def\authorf{Ishanu Chattopadhyay}
\def\addressa{Department of Medicine, University of Chicago, Chicago, IL USA}
\def\addressb{Committee on Genetics, Genomics \& Systems Biology, University of Chicago, Chicago, IL USA}
\def\addressc{Committee on Quantitative Methods in Social, Behavioral, and Health Sciences, University of Chicago, Chicago, IL USA}
\def\addressg{Center for Health Statistics, Department of Medicine, University of Chicago, Chicago, IL USA}
\def\addressf{Department of Neurology, University of Chicago, Chicago, IL USA}
\def\addressh{Committee on Neurobiology, University of Chicago, Chicago, IL USA}
\title{\TITLE}
\author{\sffamily \fontsize{10}{12}\selectfont \authora$^{1}$, % \authorb$^{1}$, \authorc$^{1}$,
\authore$^{5,6}$ and \authorf$^{1,2,3,4\bigstar}$\\
\vspace{10pt}
\sffamily \fontsize{10}{12}\selectfont
$^{1}$\addressa\\
$^{2}$\addressb\\
$^{3}$\addressc\\
$^{4}$\addressg\\
$^{5}$\addressf\\
$^{6}$\addressh
\vskip 1em
$^\bigstar$To whom correspondence should be addressed: e-mail: \texttt{ishanu@u\
chicago.edu}.}
\def\zcor{ZCoR\xspace}
\def\zcorx{ZCoR$^\bigstar$\xspace}
\def\pcor{ZCoR\xspace}
\def\DISEASE{ADRD\xspace}
%###########################################
\def\DXCODES{7,026,942,339}%Number of codes:
\def\uDXCODES{87,627}%Number of unique codes:
\def\RXCODES{}%Number of codes:
\def\uRXCODES{}%Number of unique codes:
\def\numTruven{87 million\xspace}%Number of unique patients in Truven
\def\malesTruven{341318}%Number of males in Truven
\def\femalesTruven{387700}%Number of females in Truven
\def\malesTruvencontrol{330921}%Number of males in Truven
\def\femalesTruvencontrol{375101}%Number of females in Truven
\def\avgLen{}%average length of record
\def\avgNumDX{0.01\xspace}%average number of DX codes
\def\avgNumRX{XX\xspace}%average number of DX codes
\def\totalpatients{729,018} %number of unique patients in this study (all cohorts)
\def\totaln{\totalpatients} %number of unique patients in this study (all cohorts)
\def\totalnpos{22,996} %number of unique patients in this study (all cohorts)
\def\totalnneg{706,022} %number of unique patients in this study (all cohorts)
\def\DXphn{45}%total number of DX phenotypes
\def\RXphn{18}%total number of RX phenotypes
\def\numfeatures{701\xspace}%total number of features used
\def\PREDWINDOW{1}
\def\CONFWINDOW{2}
\def\INFWINDOW{2}
\def\dxcodesM{6462501}% this problem
\def\dxucodesM{17501}% this problem
\def\dxcodesF{9426722}% this problem
\def\dxucodesF{18633}% this problem
%###########################################
\def\COLWA{\XCOLA!40}
\def\COLWB{\XCOLD!20}
\def\COLWC{\XCOLA!40}
\def\COLWD{\XCOLD!20}
\def\COLWE{\XCOLA!40!IndianRed1}
\def\COLWF{\XCOLD!40}
\def\COLWG{\XCOLA!40!IndianRed1}
\def\COLWH{\XCOLD!40}
\def\COLWI{\XCOLA!30}
\def\COLWJ{\XCOLD!15}
\def\COLWK{\XCOLA!30}
\def\COLWL{\XCOLD!15}