diff --git a/configs/data/local.yaml b/configs/data/local.yaml index f825a88..205dc2c 100644 --- a/configs/data/local.yaml +++ b/configs/data/local.yaml @@ -6,78 +6,78 @@ init_args: name: human return_dense: true batch_size: 128 - directory_path: /mnt/projects/debruinz_project/summer_census_data/3m_subset + directory_path: /mnt/projects/debruinz_project/july2024_census_data/subset train_npz_masks: - - 3m_human_counts_1.npz - - 3m_human_counts_2.npz - - 3m_human_counts_3.npz - - 3m_human_counts_4.npz - - 3m_human_counts_5.npz - - 3m_human_counts_6.npz - - 3m_human_counts_7.npz - - 3m_human_counts_8.npz - - 3m_human_counts_9.npz - - 3m_human_counts_10.npz - - 3m_human_counts_11.npz - - 3m_human_counts_12.npz - - 3m_human_counts_13.npz + - human_counts_1.npz + - human_counts_2.npz + - human_counts_3.npz + - human_counts_4.npz + - human_counts_5.npz + - human_counts_6.npz + - human_counts_7.npz + - human_counts_8.npz + - human_counts_9.npz + - human_counts_10.npz + - human_counts_11.npz + - human_counts_12.npz + - human_counts_13.npz train_metadata_masks: - - 3m_human_metadata_1.pkl - - 3m_human_metadata_2.pkl - - 3m_human_metadata_3.pkl - - 3m_human_metadata_4.pkl - - 3m_human_metadata_5.pkl - - 3m_human_metadata_6.pkl - - 3m_human_metadata_7.pkl - - 3m_human_metadata_8.pkl - - 3m_human_metadata_9.pkl - - 3m_human_metadata_10.pkl - - 3m_human_metadata_11.pkl - - 3m_human_metadata_12.pkl - - 3m_human_metadata_13.pkl - val_npz_masks: 3m_human_counts_14.npz - val_metadata_masks: 3m_human_metadata_14.pkl - test_npz_masks: 3m_human_counts_15.npz - test_metadata_masks: 3m_human_metadata_15.pkl + - human_metadata_1.pkl + - human_metadata_2.pkl + - human_metadata_3.pkl + - human_metadata_4.pkl + - human_metadata_5.pkl + - human_metadata_6.pkl + - human_metadata_7.pkl + - human_metadata_8.pkl + - human_metadata_9.pkl + - human_metadata_10.pkl + - human_metadata_11.pkl + - human_metadata_12.pkl + - human_metadata_13.pkl + val_npz_masks: human_counts_14.npz + val_metadata_masks: human_metadata_14.pkl + test_npz_masks: human_counts_15.npz + test_metadata_masks: human_metadata_15.pkl verbose: false - class_path: cmmvae.data.local.SpeciesManager init_args: name: mouse return_dense: true batch_size: 128 - directory_path: /mnt/projects/debruinz_project/summer_census_data/3m_subset + directory_path: /mnt/projects/debruinz_project/july2024_census_data/subset train_npz_masks: - - 3m_mouse_counts_1.npz - - 3m_mouse_counts_2.npz - - 3m_mouse_counts_3.npz - - 3m_mouse_counts_4.npz - - 3m_mouse_counts_5.npz - - 3m_mouse_counts_6.npz - - 3m_mouse_counts_7.npz - - 3m_mouse_counts_8.npz - - 3m_mouse_counts_9.npz - - 3m_mouse_counts_10.npz - - 3m_mouse_counts_11.npz - - 3m_mouse_counts_12.npz - - 3m_mouse_counts_13.npz + - mouse_counts_1.npz + - mouse_counts_2.npz + - mouse_counts_3.npz + - mouse_counts_4.npz + - mouse_counts_5.npz + - mouse_counts_6.npz + - mouse_counts_7.npz + - mouse_counts_8.npz + - mouse_counts_9.npz + - mouse_counts_10.npz + - mouse_counts_11.npz + - mouse_counts_12.npz + - mouse_counts_13.npz train_metadata_masks: - - 3m_mouse_metadata_1.pkl - - 3m_mouse_metadata_2.pkl - - 3m_mouse_metadata_3.pkl - - 3m_mouse_metadata_4.pkl - - 3m_mouse_metadata_5.pkl - - 3m_mouse_metadata_6.pkl - - 3m_mouse_metadata_7.pkl - - 3m_mouse_metadata_8.pkl - - 3m_mouse_metadata_9.pkl - - 3m_mouse_metadata_10.pkl - - 3m_mouse_metadata_11.pkl - - 3m_mouse_metadata_12.pkl - - 3m_mouse_metadata_13.pkl - val_npz_masks: 3m_mouse_counts_14.npz - val_metadata_masks: 3m_mouse_metadata_14.pkl - test_npz_masks: 3m_mouse_counts_15.npz - test_metadata_masks: 3m_mouse_metadata_15.pkl + - mouse_metadata_1.pkl + - mouse_metadata_2.pkl + - mouse_metadata_3.pkl + - mouse_metadata_4.pkl + - mouse_metadata_5.pkl + - mouse_metadata_6.pkl + - mouse_metadata_7.pkl + - mouse_metadata_8.pkl + - mouse_metadata_9.pkl + - mouse_metadata_10.pkl + - mouse_metadata_11.pkl + - mouse_metadata_12.pkl + - mouse_metadata_13.pkl + val_npz_masks: mouse_counts_14.npz + val_metadata_masks: mouse_metadata_14.pkl + test_npz_masks: mouse_counts_15.npz + test_metadata_masks: mouse_metadata_15.pkl verbose: false num_workers: 2 n_val_workers: 1 diff --git a/configs/model/config.yaml b/configs/model/config.yaml index 0049ffb..4c47fce 100644 --- a/configs/model/config.yaml +++ b/configs/model/config.yaml @@ -53,7 +53,7 @@ init_args: encoder_config: class_path: cmmvae.modules.base.FCBlockConfig init_args: - layers: [ 60664, 1024, 512 ] + layers: [ 60530, 1024, 512 ] dropout_rate: [ 0.1, 0.1 ] use_batch_norm: True use_layer_norm: False @@ -61,7 +61,7 @@ init_args: decoder_config: class_path: cmmvae.modules.base.FCBlockConfig init_args: - layers: [ 512, 1024, 60664 ] + layers: [ 512, 1024, 60530 ] dropout_rate: 0.0 use_batch_norm: False use_layer_norm: False @@ -72,7 +72,7 @@ init_args: encoder_config: class_path: cmmvae.modules.base.FCBlockConfig init_args: - layers: [ 52417, 1024, 512 ] + layers: [ 52437, 1024, 512 ] dropout_rate: [ 0.1, 0.1 ] use_batch_norm: True use_layer_norm: False @@ -80,7 +80,7 @@ init_args: decoder_config: class_path: cmmvae.modules.base.FCBlockConfig init_args: - layers: [ 512, 1024, 52417 ] + layers: [ 512, 1024, 52437 ] dropout_rate: 0.0 use_batch_norm: False use_layer_norm: False