From 7cbc2800a405553b193f799f2e27278d983272b4 Mon Sep 17 00:00:00 2001 From: deliaBlue Date: Thu, 25 Jan 2024 13:26:46 +0100 Subject: [PATCH] docs: update BED format --- config/README.md | 9 +++++---- 1 file changed, 5 insertions(+), 4 deletions(-) diff --git a/config/README.md b/config/README.md index 7dc384b..2309c3f 100644 --- a/config/README.md +++ b/config/README.md @@ -100,10 +100,10 @@ There are 4 files you must provide: resource][chrMap] provides such files for various organisms, and in the expected format. -5. **OPTIONAL**. ASCII-style pileups of read alignments produced for individual - libraries, combinations of libraries and/or all libraries of a given run. - The exact number and nature of the outputs depends on the workflow - inputs/parameters. +5. **OPTIONAL**: A **BED6** file with regions for which to produce + [ASCII-style alignment pileups][ascii-pileups] for. If not provided, no + pileups will be generated. Refer [here][bed-format] to see the expected + format. > General note: If you want to process the genome resources before use (e.g., > filtering), you can do that, but make sure the formats of any modified @@ -124,6 +124,7 @@ parameters to your liking. The template explains what each of the parameters mean and how you can meaningfully adjust them. [ascii-pileups]: +[bed-format]: [chrMap]: [ensembl]: [ensembl-bed]: