diff --git a/behaviour/features/squonk2-basic-job-execution.feature b/behaviour/features/squonk2-basic-job-execution.feature index 44017ff..cf49a3e 100644 --- a/behaviour/features/squonk2-basic-job-execution.feature +++ b/behaviour/features/squonk2-basic-job-execution.feature @@ -98,6 +98,10 @@ Feature: Verify a fragalysis stack can run Squonk Jobs against public Targets "variables": { "outfile": "merged.sdf", "count": 1, + "smilesFieldName": "original SMILES", + "fragIdField": "_Name", + "proteinFieldName": "ref_pdb", + "proteinFieldValue": "A71EV2A", "protein": "fragalysis-files/{SUB_PATH}/A71EV2A-x0152_A_201_1_A71EV2A-x3977+A+202+1_apo-desolv.pdb", "fragments": [ "fragalysis-files/{SUB_PATH}/A71EV2A-x0202_A_147_1_A71EV2A-x3977+A+202+1_ligand_LIG.mol", @@ -109,7 +113,9 @@ Feature: Verify a fragalysis stack can run Squonk Jobs against public Targets Then the response should be ACCEPTED And the response should contain a JobRequest ID And the JobRequest should have a job_status value of SUCCESS within 1 minute -# And the JobRequest should have an upload_status value of SUCCESS within 20 seconds + And the JobRequest should have an upload_status value of SUCCESS within 20 seconds + When I do a GET request at /api/compound-sets + Then the length of the list in the response should be 1 Scenario: Delete the last FileTransfer Given I can login