diff --git a/bin/dryad_summary.py b/bin/dryad_summary.py index 7603601..405c21b 100755 --- a/bin/dryad_summary.py +++ b/bin/dryad_summary.py @@ -62,7 +62,7 @@ def join_dfs_with_quast(df_log, df_excluded, df_quast): df_log_excluded_quast = pd.merge(df_log_excluded, df_quast, on='Sample', how='outer') # Change float to int - df_log_excluded_quast[['Sequence Length','Cluster Coverage (bps)','Contigs','N50']] = df_log_excluded_quast[['Sequence Length','Cluster Coverage (bps)','Contigs','N50']].astype(int) + df_log_excluded_quast[['Sequence Length','Cluster Coverage (bps)','Contigs','N50']] = df_log_excluded_quast[['Sequence Length','Cluster Coverage (bps)','Contigs','N50']].fillna(-1).astype(int) # Rename and Drop columns df_log_excluded_quast = df_log_excluded_quast.rename(columns={'excluded_from_analysis':'Excluded from Parsnp\'s analysis'})