diff --git a/404.html b/404.html index 79ae000..1af95a5 100644 --- a/404.html +++ b/404.html @@ -39,7 +39,7 @@ tidySpatialExperiment - 0.99.18 + 0.99.19 diff --git a/apple-touch-icon-120x120.png b/apple-touch-icon-120x120.png index 50ba548..0b5c909 100644 Binary files a/apple-touch-icon-120x120.png and b/apple-touch-icon-120x120.png differ diff --git a/apple-touch-icon-152x152.png b/apple-touch-icon-152x152.png index 9c990f0..381cd33 100644 Binary files a/apple-touch-icon-152x152.png and b/apple-touch-icon-152x152.png differ diff --git a/apple-touch-icon-180x180.png b/apple-touch-icon-180x180.png index 00a0720..fb6ba82 100644 Binary files a/apple-touch-icon-180x180.png and b/apple-touch-icon-180x180.png differ diff --git a/apple-touch-icon-60x60.png b/apple-touch-icon-60x60.png index e9862a0..c262be3 100644 Binary files a/apple-touch-icon-60x60.png and b/apple-touch-icon-60x60.png differ diff --git a/apple-touch-icon-76x76.png b/apple-touch-icon-76x76.png index 29fef6d..dd7a164 100644 Binary files a/apple-touch-icon-76x76.png and b/apple-touch-icon-76x76.png differ diff --git a/apple-touch-icon.png b/apple-touch-icon.png index a757871..4163f9b 100644 Binary files a/apple-touch-icon.png and b/apple-touch-icon.png differ diff --git a/articles/index.html b/articles/index.html index 363be48..1939c30 100644 --- a/articles/index.html +++ b/articles/index.html @@ -17,7 +17,7 @@ tidySpatialExperiment - 0.99.18 + 0.99.19 diff --git a/articles/overview.html b/articles/overview.html index 7a76c60..e4b2d62 100644 --- a/articles/overview.html +++ b/articles/overview.html @@ -40,7 +40,7 @@ tidySpatialExperiment - 0.99.18 + 0.99.19 @@ -714,7 +714,7 @@

Read-only columns## [8] base ## ## other attached packages: -## [1] tidySpatialExperiment_0.99.18 ggplot2_3.4.4 +## [1] tidySpatialExperiment_0.99.19 ggplot2_3.4.4 ## [3] ttservice_0.4.0 tidyr_1.3.0 ## [5] dplyr_1.1.4 tidySingleCellExperiment_1.12.0 ## [7] SpatialExperiment_1.12.0 SingleCellExperiment_1.24.0 @@ -758,7 +758,7 @@

Read-only columns## [61] tools_4.3.2 data.table_1.14.10 ## [63] locfit_1.5-9.8 fs_1.6.3 ## [65] rhdf5_2.46.1 grid_4.3.2 -## [67] DropletUtils_1.22.0 edgeR_4.0.10 +## [67] DropletUtils_1.22.0 edgeR_4.0.11 ## [69] colorspace_2.1-0 GenomeInfoDbData_1.2.11 ## [71] HDF5Array_1.30.0 cli_3.6.2 ## [73] textshaping_0.3.7 fansi_1.0.6 diff --git a/authors.html b/authors.html index b14b0b2..dfcaea7 100644 --- a/authors.html +++ b/authors.html @@ -17,7 +17,7 @@ tidySpatialExperiment - 0.99.18 + 0.99.19 @@ -77,13 +77,13 @@

Citation

Hutchison W, Mangiola S (2024). tidySpatialExperiment: Brings SpatialExperiment to the tidyverse. -R package version 0.99.18, https://william-hutchison.github.io/tidySpatialExperiment/, https://github.com/william-hutchison/tidySpatialExperiment. +R package version 0.99.19, https://william-hutchison.github.io/tidySpatialExperiment/, https://github.com/william-hutchison/tidySpatialExperiment. 

@Manual{,
   title = {tidySpatialExperiment: Brings SpatialExperiment to the tidyverse},
   author = {William Hutchison and Stefano Mangiola},
   year = {2024},
-  note = {R package version 0.99.18, https://william-hutchison.github.io/tidySpatialExperiment/},
+  note = {R package version 0.99.19, https://william-hutchison.github.io/tidySpatialExperiment/},
   url = {https://github.com/william-hutchison/tidySpatialExperiment},
 }
diff --git a/favicon-16x16.png b/favicon-16x16.png index 0cb6e58..9746b17 100644 Binary files a/favicon-16x16.png and b/favicon-16x16.png differ diff --git a/favicon-32x32.png b/favicon-32x32.png index 903c8fa..5c65af4 100644 Binary files a/favicon-32x32.png and b/favicon-32x32.png differ diff --git a/index.html b/index.html index 55f50fb..25d4814 100644 --- a/index.html +++ b/index.html @@ -43,7 +43,7 @@ tidySpatialExperiment - 0.99.18 + 0.99.19 diff --git a/news/index.html b/news/index.html index 52935d7..c4ab18a 100644 --- a/news/index.html +++ b/news/index.html @@ -17,7 +17,7 @@ tidySpatialExperiment - 0.99.18 + 0.99.19 @@ -91,7 +91,19 @@

tidySpatialExperiment 0.99.16

-
+
+

tidySpatialExperiment 0.99.17

+
+
+

tidySpatialExperiment 0.99.18

+
+
+

tidySpatialExperiment 0.99.19

+
diff --git a/pkgdown.yml b/pkgdown.yml index 519aebe..7d8d81a 100644 --- a/pkgdown.yml +++ b/pkgdown.yml @@ -3,5 +3,5 @@ pkgdown: 2.0.7 pkgdown_sha: ~ articles: overview: overview.html -last_built: 2024-01-19T21:51Z +last_built: 2024-01-21T23:37Z diff --git a/reference/add_class.html b/reference/add_class.html index 21b85b6..f733198 100644 --- a/reference/add_class.html +++ b/reference/add_class.html @@ -17,7 +17,7 @@ tidySpatialExperiment - 0.99.18 + 0.99.19 diff --git a/reference/aggregate_cells.html b/reference/aggregate_cells.html index 95f6b91..d3d7f49 100644 --- a/reference/aggregate_cells.html +++ b/reference/aggregate_cells.html @@ -17,7 +17,7 @@ tidySpatialExperiment - 0.99.18 + 0.99.19 diff --git a/reference/arrange.html b/reference/arrange.html index 1cf7d64..cfd67c8 100644 --- a/reference/arrange.html +++ b/reference/arrange.html @@ -22,7 +22,7 @@ tidySpatialExperiment - 0.99.18 + 0.99.19 diff --git a/reference/as_tibble.html b/reference/as_tibble.html index e0bfc3c..e26d1ea 100644 --- a/reference/as_tibble.html +++ b/reference/as_tibble.html @@ -32,7 +32,7 @@ tidySpatialExperiment - 0.99.18 + 0.99.19 diff --git a/reference/bind_cols.html b/reference/bind_cols.html index 3a1eec1..6790191 100644 --- a/reference/bind_cols.html +++ b/reference/bind_cols.html @@ -22,7 +22,7 @@ tidySpatialExperiment - 0.99.18 + 0.99.19 diff --git a/reference/bind_rows.html b/reference/bind_rows.html index df72b0f..f52e997 100644 --- a/reference/bind_rows.html +++ b/reference/bind_rows.html @@ -22,7 +22,7 @@ tidySpatialExperiment - 0.99.18 + 0.99.19 diff --git a/reference/count.html b/reference/count.html index 1e8d3fd..e497b7c 100644 --- a/reference/count.html +++ b/reference/count.html @@ -25,7 +25,7 @@ tidySpatialExperiment - 0.99.18 + 0.99.19 diff --git a/reference/distinct.html b/reference/distinct.html index 95ca18d..e1524e1 100644 --- a/reference/distinct.html +++ b/reference/distinct.html @@ -18,7 +18,7 @@ tidySpatialExperiment - 0.99.18 + 0.99.19 diff --git a/reference/drop_class.html b/reference/drop_class.html index bb12092..85e1356 100644 --- a/reference/drop_class.html +++ b/reference/drop_class.html @@ -17,7 +17,7 @@ tidySpatialExperiment - 0.99.18 + 0.99.19 diff --git a/reference/ellipse.html b/reference/ellipse.html index 9b66271..069de4c 100644 --- a/reference/ellipse.html +++ b/reference/ellipse.html @@ -17,7 +17,7 @@ tidySpatialExperiment - 0.99.18 + 0.99.19 @@ -175,7 +175,9 @@

Examples

#> 1 section1 lowres #### 0.0510334 #> 2 section2 lowres #### 0.0510334 spe |> - mutate(in_ellipse = ellipse(array_col, array_row, center = c(50, 50), axes_lengths = c(20, 10))) + mutate(in_ellipse = ellipse( + array_col, array_row, center = c(50, 50), axes_lengths = c(20, 10)) + ) #> # A SpatialExperiment-tibble abstraction: 99 × 8 #> # Features=50 | Cells=99 | Assays=counts #> .cell in_tissue array_row array_col sample_id in_ellipse pxl_col_in_fullres @@ -192,6 +194,7 @@

Examples

#> 10 AAACAT… FALSE 61 97 section1 FALSE 7886 #> # ℹ 89 more rows #> # ℹ 1 more variable: pxl_row_in_fullres <int> + diff --git a/reference/extract.html b/reference/extract.html index 668c267..eaa5c7f 100644 --- a/reference/extract.html +++ b/reference/extract.html @@ -26,7 +26,7 @@ tidySpatialExperiment - 0.99.18 + 0.99.19 diff --git a/reference/filter.html b/reference/filter.html index 2944507..bc454f6 100644 --- a/reference/filter.html +++ b/reference/filter.html @@ -21,7 +21,7 @@ tidySpatialExperiment - 0.99.18 + 0.99.19 diff --git a/reference/formatting.html b/reference/formatting.html index ec6806a..7a3825b 100644 --- a/reference/formatting.html +++ b/reference/formatting.html @@ -36,7 +36,7 @@ tidySpatialExperiment - 0.99.18 + 0.99.19 diff --git a/reference/ggplot.html b/reference/ggplot.html index ae1c759..e5fe5ca 100644 --- a/reference/ggplot.html +++ b/reference/ggplot.html @@ -20,7 +20,7 @@ tidySpatialExperiment - 0.99.18 + 0.99.19 diff --git a/reference/glimpse.html b/reference/glimpse.html index 38fe962..b8df334 100644 --- a/reference/glimpse.html +++ b/reference/glimpse.html @@ -24,7 +24,7 @@ tidySpatialExperiment - 0.99.18 + 0.99.19 diff --git a/reference/group_by.html b/reference/group_by.html index 4126990..5243332 100644 --- a/reference/group_by.html +++ b/reference/group_by.html @@ -19,7 +19,7 @@ tidySpatialExperiment - 0.99.18 + 0.99.19 diff --git a/reference/index.html b/reference/index.html index 057b279..df22f20 100644 --- a/reference/index.html +++ b/reference/index.html @@ -17,7 +17,7 @@ tidySpatialExperiment - 0.99.18 + 0.99.19 diff --git a/reference/inner_join.html b/reference/inner_join.html index 111f073..4eea696 100644 --- a/reference/inner_join.html +++ b/reference/inner_join.html @@ -43,7 +43,7 @@ tidySpatialExperiment - 0.99.18 + 0.99.19 diff --git a/reference/join_features.html b/reference/join_features.html index 014e74c..5f79610 100644 --- a/reference/join_features.html +++ b/reference/join_features.html @@ -17,7 +17,7 @@ tidySpatialExperiment - 0.99.18 + 0.99.19 diff --git a/reference/left_join.html b/reference/left_join.html index ecd27d6..21e4f06 100644 --- a/reference/left_join.html +++ b/reference/left_join.html @@ -43,7 +43,7 @@ tidySpatialExperiment - 0.99.18 + 0.99.19 diff --git a/reference/mutate.html b/reference/mutate.html index 1a863c7..c5d35b7 100644 --- a/reference/mutate.html +++ b/reference/mutate.html @@ -19,7 +19,7 @@ tidySpatialExperiment - 0.99.18 + 0.99.19 diff --git a/reference/nest.html b/reference/nest.html index 1883510..756d539 100644 --- a/reference/nest.html +++ b/reference/nest.html @@ -22,7 +22,7 @@ tidySpatialExperiment - 0.99.18 + 0.99.19 diff --git a/reference/pivot_longer.html b/reference/pivot_longer.html index 872cc91..998d870 100644 --- a/reference/pivot_longer.html +++ b/reference/pivot_longer.html @@ -20,7 +20,7 @@ tidySpatialExperiment - 0.99.18 + 0.99.19 diff --git a/reference/plot_ly.html b/reference/plot_ly.html index 127def7..29c8b04 100644 --- a/reference/plot_ly.html +++ b/reference/plot_ly.html @@ -22,7 +22,7 @@ tidySpatialExperiment - 0.99.18 + 0.99.19 @@ -359,7 +359,7 @@

Examples

spe |> plot_ly(x = ~ array_col, y = ~ array_row)
- + diff --git a/reference/pull.html b/reference/pull.html index b25ba7e..fdff5de 100644 --- a/reference/pull.html +++ b/reference/pull.html @@ -19,7 +19,7 @@ tidySpatialExperiment - 0.99.18 + 0.99.19 diff --git a/reference/quo_names.html b/reference/quo_names.html index 6710c38..a4fe26c 100644 --- a/reference/quo_names.html +++ b/reference/quo_names.html @@ -17,7 +17,7 @@ tidySpatialExperiment - 0.99.18 + 0.99.19 diff --git a/reference/rectangle.html b/reference/rectangle.html index d601660..6f1236c 100644 --- a/reference/rectangle.html +++ b/reference/rectangle.html @@ -17,7 +17,7 @@ tidySpatialExperiment - 0.99.18 + 0.99.19 @@ -179,7 +179,9 @@

Examples

#> 1 section1 lowres #### 0.0510334 #> 2 section2 lowres #### 0.0510334 spe |> - mutate(in_rectangle = rectangle(array_col, array_row, center = c(50, 50), height = 20, width = 10)) + mutate(in_rectangle = rectangle( + array_col, array_row, center = c(50, 50), height = 20, width = 10) + ) #> # A SpatialExperiment-tibble abstraction: 99 × 8 #> # Features=50 | Cells=99 | Assays=counts #> .cell in_tissue array_row array_col sample_id in_rectangle pxl_col_in_fullres diff --git a/reference/rename.html b/reference/rename.html index c97a6ca..bed467e 100644 --- a/reference/rename.html +++ b/reference/rename.html @@ -19,7 +19,7 @@ tidySpatialExperiment - 0.99.18 + 0.99.19 diff --git a/reference/right_join.html b/reference/right_join.html index 135f720..edf72d3 100644 --- a/reference/right_join.html +++ b/reference/right_join.html @@ -43,7 +43,7 @@ tidySpatialExperiment - 0.99.18 + 0.99.19 diff --git a/reference/rowwise.html b/reference/rowwise.html index 209e909..e2db8ed 100644 --- a/reference/rowwise.html +++ b/reference/rowwise.html @@ -21,7 +21,7 @@ tidySpatialExperiment - 0.99.18 + 0.99.19 diff --git a/reference/sample_n.html b/reference/sample_n.html index adaad19..0c2c347 100644 --- a/reference/sample_n.html +++ b/reference/sample_n.html @@ -34,7 +34,7 @@ tidySpatialExperiment - 0.99.18 + 0.99.19 diff --git a/reference/select.html b/reference/select.html index 85105ba..22fec68 100644 --- a/reference/select.html +++ b/reference/select.html @@ -62,7 +62,7 @@ tidySpatialExperiment - 0.99.18 + 0.99.19 diff --git a/reference/separate.html b/reference/separate.html index ff9d966..484f96c 100644 --- a/reference/separate.html +++ b/reference/separate.html @@ -26,7 +26,7 @@ tidySpatialExperiment - 0.99.18 + 0.99.19 diff --git a/reference/slice.html b/reference/slice.html index 8d1c183..72ac27d 100644 --- a/reference/slice.html +++ b/reference/slice.html @@ -28,7 +28,7 @@ tidySpatialExperiment - 0.99.18 + 0.99.19 diff --git a/reference/summarise.html b/reference/summarise.html index 420bff6..37ddb32 100644 --- a/reference/summarise.html +++ b/reference/summarise.html @@ -22,7 +22,7 @@ tidySpatialExperiment - 0.99.18 + 0.99.19 diff --git a/reference/tbl_format_header.html b/reference/tbl_format_header.html index 511c381..964fbf6 100644 --- a/reference/tbl_format_header.html +++ b/reference/tbl_format_header.html @@ -26,7 +26,7 @@ tidySpatialExperiment - 0.99.18 + 0.99.19 diff --git a/reference/unite.html b/reference/unite.html index 764657e..4260118 100644 --- a/reference/unite.html +++ b/reference/unite.html @@ -17,7 +17,7 @@ tidySpatialExperiment - 0.99.18 + 0.99.19 diff --git a/reference/unnest.html b/reference/unnest.html index afcc737..a0b527c 100644 --- a/reference/unnest.html +++ b/reference/unnest.html @@ -17,7 +17,7 @@ tidySpatialExperiment - 0.99.18 + 0.99.19