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When using the option "library_input_type": "internal" without providing a proteins column, spectral library generation fails when Oktoberfest tries to read this column.
Plus the tutorial is not updated with a file that works with the new oktoberfest 0.7.0 release.
Describe the bug
When using the option
"library_input_type": "internal"
without providing a proteins column, spectral library generation fails when Oktoberfest tries to read this column.Plus the tutorial is not updated with a file that works with the new oktoberfest 0.7.0 release.
Expected behavior
Oktoberfest should simply add the proteins column and fill it with "unknown" as outlined in the documentation: https://oktoberfest.readthedocs.io/en/stable/peptides_format.html
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