From ed8decc59a808de0fd1a40611e145b0defab9541 Mon Sep 17 00:00:00 2001
From: Glenda Yenni <glenda@weecology.org>
Date: Fri, 3 May 2024 13:39:31 -0600
Subject: [PATCH] Correct initiation target

---
 R/indicator_analysis.R | 12 ++++++------
 R/report_work.R        |  5 +++--
 2 files changed, 9 insertions(+), 8 deletions(-)

diff --git a/R/indicator_analysis.R b/R/indicator_analysis.R
index 95bcf8b..22f9ceb 100644
--- a/R/indicator_analysis.R
+++ b/R/indicator_analysis.R
@@ -41,7 +41,7 @@ foraging_analysis <- function(path = get_default_data_path(),
     geom_ysidedensity(aes(fill=period), alpha = .5) +
     geom_ysidehline(yintercept = 32, linetype=2, color="darkgreen", linewidth=1) +
     theme(
-      text = element_text(family = "AppleGothic", size = 15),
+      text = element_text(family = "AppleGothic", size = 18),
       ggside.panel.border = element_blank(),
       ggside.panel.grid = element_blank(),
       ggside.panel.background = element_blank(),
@@ -85,16 +85,16 @@ initiation <- initiation_indicator(minyear = 2004) %>%
   geom_line(color="black", linewidth=1.1) +
   geom_ribbon(alpha=0.2, fill="grey") +
   geom_ribbon(alpha=0.5, aes(color=NULL, fill=period)) +
-  geom_hline(yintercept=2.5, linetype=2, color="darkgreen", linewidth=1) +
+  geom_hline(yintercept=4.5, linetype=2, color="darkgreen", linewidth=1) +
   scale_y_reverse(limits=c(5,-.2), breaks=c(4,3,2,1,0),labels=c("December","January","February","March","April")) +
   labs(x="Year", y = "Date Score") +
   theme_classic() +
   theme(legend.position="none") +
     guides(fill = guide_legend(byrow = TRUE)) +
     geom_ysidedensity(aes(fill=period), alpha = .5) +
-    geom_ysidehline(yintercept = 2.5, linetype=2, color="darkgreen", linewidth=1) +
+    geom_ysidehline(yintercept = 4.5, linetype=2, color="darkgreen", linewidth=1) +
     theme(
-      text = element_text(family = "AppleGothic", size = 15),
+      text = element_text(family = "AppleGothic", size = 18),
       ggside.panel.border = element_blank(),
       ggside.panel.grid = element_blank(),
       ggside.panel.background = element_blank(),
@@ -147,7 +147,7 @@ library(ggside)
     geom_ysidedensity(aes(fill=period), alpha = .5) +
     geom_ysidehline(yintercept = .5, linetype=2, color="darkgreen", linewidth=1) +
     theme(
-      text = element_text(family = "AppleGothic", size = 15),
+      text = element_text(family = "AppleGothic", size = 18),
       ggside.panel.border = element_blank(),
       ggside.panel.grid = element_blank(),
       ggside.panel.background = element_blank(),
@@ -200,7 +200,7 @@ library(ggside)
     geom_ysidedensity(aes(fill=period), alpha = .5) +
     geom_ysidehline(yintercept = 1.6, linetype=2, color="darkgreen", linewidth=1) +
     theme(
-      text = element_text(family = "AppleGothic", size = 15),
+      text = element_text(family = "AppleGothic", size = 18),
       ggside.panel.border = element_blank(),
       ggside.panel.grid = element_blank(),
       ggside.panel.background = element_blank(),
diff --git a/R/report_work.R b/R/report_work.R
index e84b682..4da64ca 100644
--- a/R/report_work.R
+++ b/R/report_work.R
@@ -292,10 +292,11 @@ plot_initiation <- function(path = get_default_data_path(),
     dplyr::arrange(.data$year) %>%
     dplyr::filter(dplyr::between(.data$year, minyear, maxyear)) %>%
     dplyr::mutate(color = dplyr::case_when(.data$date_score<1.5 ~ "red4",
-                                           dplyr::between(.data$date_score,1.5,2.5) ~ "orange",
-                                           .data$date_score>2.5 ~ "darkgreen")) %>%
+                                           dplyr::between(.data$date_score,1.5,4.5) ~ "orange",
+                                           .data$date_score>4.5 ~ "darkgreen")) %>%
 
     ggplot2::ggplot(ggplot2::aes(.data$year, .data$date_score, color=.data$color)) +
+    ggplot2::geom_hline(yintercept=4.5, linetype=2, color="darkgreen", linewidth=.5) +
     ggplot2::geom_hline(yintercept=2.5, linetype=2, color="orange", linewidth=.5) +
     ggplot2::geom_hline(yintercept=1.5, linetype=2, color="red4", linewidth=.5) +
     ggplot2::geom_point(alpha=2, size=3, shape=15) +