From 14c08f55d3531bb8100336c0618b3f7178073f7a Mon Sep 17 00:00:00 2001 From: Pat Dumandan Date: Tue, 30 Jan 2024 11:31:51 -0500 Subject: [PATCH 1/4] add rodent census 525 data [minor] --- DataCleaningScripts/new_rodent_data.r | 2 +- Rodents/Portal_rodent.csv | 158 ++++++++++++++++++++++++-- 2 files changed, 152 insertions(+), 8 deletions(-) diff --git a/DataCleaningScripts/new_rodent_data.r b/DataCleaningScripts/new_rodent_data.r index 5713fd0b..0590a51c 100644 --- a/DataCleaningScripts/new_rodent_data.r +++ b/DataCleaningScripts/new_rodent_data.r @@ -15,7 +15,7 @@ source('DataCleaningScripts/clean_pit_tags.R') # New file to be checked ############################################################################## -newperiod = '524' +newperiod = '525' filepath = "D:\\Dropbox\\Portal\\PORTAL_primary_data\\Rodent\\Raw_data\\New_data" diff --git a/Rodents/Portal_rodent.csv b/Rodents/Portal_rodent.csv index a812acc9..2805ec15 100644 --- a/Rodents/Portal_rodent.csv +++ b/Rodents/Portal_rodent.csv @@ -75943,7 +75943,7 @@ 76046,6,20,2023,519,24,,74,"DM","M","Z",,,,,,,34,36,"7A097C",,,,,,,,,,, 76047,6,20,2023,519,19,,45,"OT","F","Z",,,,,,,20,21,"7970B1","*",,,,,,,,,, 76048,6,20,2023,519,19,,61,"PP","F",,,,,,"E",,21,16,"79C897",,,,,,,,,,, -76049,6,20,2023,519,19,,36,"PB","F","Z",,,,,,,27,35,"796FD8",,,,,,,,,,, +76049,6,20,2023,519,19,,36,"PB","M","Z",,,,,,,27,35,"796FD8",,,,,,,,,,, 76050,6,20,2023,519,19,,13,"PB","F",,,,,,"E",,27,33,"796383",,,,,,,,,,, 76051,6,20,2023,519,19,,12,"RM","F","Z",,,,,,,16,8,"79C701","*",,,,,,,,,, 76052,6,20,2023,519,19,,57,"PB","M",,,"M",,,,,24,33,"05C387",,,,,,,,,,, @@ -76473,7 +76473,7 @@ 76576,7,19,2023,520,17,,31,"DM","F",,,,,"P","B",,37,52,"C2B4A7",,,,,,,,,,, 76577,7,19,2023,520,17,,72,"PP","F","Z",,,,,,,20,11,"7A0406","*",,,,,,,,,, 76578,7,19,2023,520,17,,61,"DM","F","Z",,,,,,,35,40,"05C448",,,,,,,,,,, -76579,7,19,2023,520,17,,23,"DM","M","Z",,,,,,,35,40,"05C383",,,,,,,,,,, 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77084,10,14,2023,522,6,,61,"OT","F","Z",,,,,,,18,21,"797287",,,,,,,,,,, 77085,10,14,2023,522,6,,71,"PB","F","Z",,,,,,,25,26,"05BBF0","*",,,,,,,,,, -77086,10,14,2023,522,24,,26,"OT","F","Z",,,,,,,18,25,"05C4BE","*",,,,,,,,,, +77086,10,14,2023,522,24,,26,"OT","M","Z",,,,,,,18,25,"05C4BE","*",,,,,,,,,, 77087,10,14,2023,522,24,,32,"PE","F","Z",,,,,,,20,21,"05BBEF","*",,,,,,,,,, 77088,10,14,2023,522,24,,35,"DM","F","Z",,,,,,,35,40,"BF1937",,,,,,,,,,, 77089,10,14,2023,522,24,,17,"OT","F","Z",,,,,,,18,26,"793CBC",,,,,,,,,,, @@ -77325,7 +77325,7 @@ 77428,11,11,2023,523,22,,27,"PB","F","Z",,,,,,,25,25,"7A0B68",,,,,,,,,,, 77429,11,11,2023,523,22,,12,"PB","F","Z",,,,,,,25,23,"79E46D",,,,,,,,,,, 77430,11,11,2023,523,22,,26,"PB","F","Z",,,,,,,25,26,"BF1684",,,,,,,,,,, -77431,11,11,2023,523,22,,13,"RO","M","Z",,,,,,,15,10,"05C48B",,,,,,,,,,, +77431,11,11,2023,523,22,,13,"RM","M","Z",,,,,,,15,10,"05C48B",,,,,,,,,,, 77432,11,11,2023,523,1,,55,"DM","M","Z",,,,,,,32,43,,,,,,,,,,"R",, 77433,11,11,2023,523,20,,51,"DO","F","Z",,,,,,,32,39,,,,,,,,,,"R",, 77434,11,11,2023,523,20,,35,"DO","F","Z",,,,,,,35,33,,,,,,,,,,"R",, @@ -77403,7 +77403,7 @@ 77506,11,12,2023,523,7,,31,"OT","F","Z",,,,,,,19,20,"05BC1B",,,,,,,,,"D",, 77507,11,12,2023,523,7,,57,"PB","F",,,,,"P",,,26,30,"BF0D26","*",,,,,,,,,, 77508,11,12,2023,523,7,,37,"PM","F","Z",,,,,,,21,22,"05C49D",,,,,,,,,,, -77509,11,12,2023,523,7,3,71,"DM","F","Z",,,,,,,34,36,"79FB3E",,,,,,,,,,, +77509,11,12,2023,523,7,3,71,"DM","M","Z",,,,,,,34,36,"79FB3E",,,,,,,,,,, 77510,11,12,2023,523,7,3,61,"DO","M","Z",,,,,,,35,41,"797C2A",,,,,,,,,,, 77511,11,12,2023,523,7,,76,"DM","M","Z",,,,,,,35,41,"C2DBFC","*",,,,,,,,,, 77512,11,12,2023,523,7,3,71,"DM","F","Z",,,,,,,34,39,"05C453",,,,,,,,,,, @@ -77471,7 +77471,7 @@ 77574,12,9,2023,524,6,,22,"OT","F","Z",,,,,,,19,19,"05C496",,,,,,,,,,, 77575,12,9,2023,524,6,,52,"DM","F","Z",,,,,,,35,40,"7969A2",,,,,,,,,,, 77576,12,9,2023,524,6,,71,"DM","M","Z",,,,,,,35,39,"4B6FC4",,,,,,,,,,, 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+77834,1,7,2024,525,13,,65,"DM","F",,,,,"P",,,35,40,"05C37F",,,,,,,,,,, +77835,1,7,2024,525,13,,56,"DM","M","Z",,,,,,,35,45,"793F8B",,,,,,,,,,, +77836,1,7,2024,525,15,,37,"PE","M","Z",,,,,,,19,20,"79A17C",,,,,,,,,,, +77837,1,7,2024,525,15,,42,"OT","M","Z",,,,,,,19,22,"78AAB5",,,,,,,,,,, +77838,1,7,2024,525,15,,24,"RM","F","Z",,,,,,,15,12,"793DA4","*",,,,,,,,,, +77839,1,7,2024,525,17,,56,"DM","F","Z",,,,,,,35,42,,,,,,,,,,"D",, +77840,1,7,2024,525,17,,53,"DM","M","Z",,,,,,,36,36,"05C383",,,,,,,,,,, +77841,1,7,2024,525,17,,26,"DM","F","Z",,,,,,,35,38,"05BC42","*",,,,,,,,,, +77842,1,7,2024,525,17,,77,"DM","M","Z",,,,,,,37,41,"79984E",,,,,,,,,,, +77843,1,7,2024,525,17,,37,"DM","F","Z",,,,,,,34,50,"05BC3E","*",,,,,,,,,, +77844,1,7,2024,525,17,,51,"OT","F","Z",,,,,,,19,19,"79FBCB",,,,,,,,,,, +77845,1,7,2024,525,17,,21,"DM","M","Z",,,,,,,35,42,"05BCA7","*",,,,,,,,,, +77846,1,7,2024,525,16,,67,"PE","M","Z",,,,,,,18,18,"BEF3E0",,,,,,,,,"R",, +77847,1,7,2024,525,16,,27,"RM","M","Z",,,,,,,15,10,,,,,,,,,,"R",, +77848,1,7,2024,525,16,,17,"PE","M",,"J",,,,,,17,14,,,,,,,,,,"R",, +77849,1,7,2024,525,15,,32,"DM","M",,,"M",,,,,35,43,,,,,,,,,,"R",, +77850,1,7,2024,525,3,,26,"DM","F","Z",,,,,,,32,43,,,,,,,,,,"R",, +77851,1,7,2024,525,9,4,,,,,,,,,,,,,,,,,,,,,,,, +77852,1,7,2024,525,10,4,,,,,,,,,,,,,,,,,,,,,,,, From 23433e403011e6cefc2519373e88e3ad0e60ab0e Mon Sep 17 00:00:00 2001 From: Pat Dumandan Date: Tue, 30 Jan 2024 11:31:51 -0500 Subject: [PATCH 2/4] add rodent census 525 data [minor] --- DataCleaningScripts/new_rodent_data.r | 2 +- Rodents/Portal_rodent.csv | 158 ++++++++++++++++++++++++-- 2 files changed, 152 insertions(+), 8 deletions(-) diff --git a/DataCleaningScripts/new_rodent_data.r b/DataCleaningScripts/new_rodent_data.r index 5713fd0b..0590a51c 100644 --- a/DataCleaningScripts/new_rodent_data.r +++ b/DataCleaningScripts/new_rodent_data.r @@ -15,7 +15,7 @@ source('DataCleaningScripts/clean_pit_tags.R') # New file to be checked ############################################################################## -newperiod = '524' +newperiod = '525' filepath = "D:\\Dropbox\\Portal\\PORTAL_primary_data\\Rodent\\Raw_data\\New_data" diff --git a/Rodents/Portal_rodent.csv b/Rodents/Portal_rodent.csv index a812acc9..2805ec15 100644 --- a/Rodents/Portal_rodent.csv +++ b/Rodents/Portal_rodent.csv @@ -75943,7 +75943,7 @@ 76046,6,20,2023,519,24,,74,"DM","M","Z",,,,,,,34,36,"7A097C",,,,,,,,,,, 76047,6,20,2023,519,19,,45,"OT","F","Z",,,,,,,20,21,"7970B1","*",,,,,,,,,, 76048,6,20,2023,519,19,,61,"PP","F",,,,,,"E",,21,16,"79C897",,,,,,,,,,, -76049,6,20,2023,519,19,,36,"PB","F","Z",,,,,,,27,35,"796FD8",,,,,,,,,,, +76049,6,20,2023,519,19,,36,"PB","M","Z",,,,,,,27,35,"796FD8",,,,,,,,,,, 76050,6,20,2023,519,19,,13,"PB","F",,,,,,"E",,27,33,"796383",,,,,,,,,,, 76051,6,20,2023,519,19,,12,"RM","F","Z",,,,,,,16,8,"79C701","*",,,,,,,,,, 76052,6,20,2023,519,19,,57,"PB","M",,,"M",,,,,24,33,"05C387",,,,,,,,,,, @@ -76473,7 +76473,7 @@ 76576,7,19,2023,520,17,,31,"DM","F",,,,,"P","B",,37,52,"C2B4A7",,,,,,,,,,, 76577,7,19,2023,520,17,,72,"PP","F","Z",,,,,,,20,11,"7A0406","*",,,,,,,,,, 76578,7,19,2023,520,17,,61,"DM","F","Z",,,,,,,35,40,"05C448",,,,,,,,,,, -76579,7,19,2023,520,17,,23,"DM","M","Z",,,,,,,35,40,"05C383",,,,,,,,,,, +76579,7,19,2023,520,17,,23,"DM","F","Z",,,,,,,35,40,"05C383",,,,,,,,,,, 76580,7,19,2023,520,17,,17,"DM","M",,,"S",,,,,35,45,"799F37",,,,,,,,,,, 76581,7,19,2023,520,17,,41,"PP","F",,,,,,"E",,20,16,"BFD9CF",,,,,,,,,,, 76582,7,19,2023,520,17,,26,"DM","F",,,,,,"E",,35,43,"C2B0A1",,,,,,,,,,, @@ -76532,7 +76532,7 @@ 76635,7,19,2023,520,13,,76,"PP","F","Z",,,,,,,21,19,"05C456",,,,,,,,,,, 76636,7,19,2023,520,13,,45,"DO","F","Z",,,,,,,35,37,"056726",,,,,,,,,,, 76637,7,19,2023,520,8,,76,"PP","F","Z",,,,,,,20,13,"7970EB","*",,,,,,,,,, -76638,7,19,2023,520,8,1,54,"PB","F","Z",,,,,,,25,,"79D635",,,,,,,,,"E",, +76638,7,19,2023,520,8,1,54,"PB","M","Z",,,,,,,25,,"79D635",,,,,,,,,"E",, 76639,7,19,2023,520,8,,23,"PB","F","Z",,,,,,,25,30,"05BC89",,,,,,,,,,, 76640,7,19,2023,520,8,,51,"PB","F","Z",,,,,,,25,29,"793D8C",,,,,,,,,,, 76641,7,19,2023,520,8,,12,"PB","M","Z",,,,,,,25,38,"79D807",,,,,,,,,,, @@ -76980,7 +76980,7 @@ 77083,10,14,2023,522,6,,66,"PP","M","Z",,,,,,,21,19,"79D7FF",,,,,,,,,,, 77084,10,14,2023,522,6,,61,"OT","F","Z",,,,,,,18,21,"797287",,,,,,,,,,, 77085,10,14,2023,522,6,,71,"PB","F","Z",,,,,,,25,26,"05BBF0","*",,,,,,,,,, -77086,10,14,2023,522,24,,26,"OT","F","Z",,,,,,,18,25,"05C4BE","*",,,,,,,,,, +77086,10,14,2023,522,24,,26,"OT","M","Z",,,,,,,18,25,"05C4BE","*",,,,,,,,,, 77087,10,14,2023,522,24,,32,"PE","F","Z",,,,,,,20,21,"05BBEF","*",,,,,,,,,, 77088,10,14,2023,522,24,,35,"DM","F","Z",,,,,,,35,40,"BF1937",,,,,,,,,,, 77089,10,14,2023,522,24,,17,"OT","F","Z",,,,,,,18,26,"793CBC",,,,,,,,,,, @@ -77325,7 +77325,7 @@ 77428,11,11,2023,523,22,,27,"PB","F","Z",,,,,,,25,25,"7A0B68",,,,,,,,,,, 77429,11,11,2023,523,22,,12,"PB","F","Z",,,,,,,25,23,"79E46D",,,,,,,,,,, 77430,11,11,2023,523,22,,26,"PB","F","Z",,,,,,,25,26,"BF1684",,,,,,,,,,, -77431,11,11,2023,523,22,,13,"RO","M","Z",,,,,,,15,10,"05C48B",,,,,,,,,,, +77431,11,11,2023,523,22,,13,"RM","M","Z",,,,,,,15,10,"05C48B",,,,,,,,,,, 77432,11,11,2023,523,1,,55,"DM","M","Z",,,,,,,32,43,,,,,,,,,,"R",, 77433,11,11,2023,523,20,,51,"DO","F","Z",,,,,,,32,39,,,,,,,,,,"R",, 77434,11,11,2023,523,20,,35,"DO","F","Z",,,,,,,35,33,,,,,,,,,,"R",, @@ -77403,7 +77403,7 @@ 77506,11,12,2023,523,7,,31,"OT","F","Z",,,,,,,19,20,"05BC1B",,,,,,,,,"D",, 77507,11,12,2023,523,7,,57,"PB","F",,,,,"P",,,26,30,"BF0D26","*",,,,,,,,,, 77508,11,12,2023,523,7,,37,"PM","F","Z",,,,,,,21,22,"05C49D",,,,,,,,,,, -77509,11,12,2023,523,7,3,71,"DM","F","Z",,,,,,,34,36,"79FB3E",,,,,,,,,,, +77509,11,12,2023,523,7,3,71,"DM","M","Z",,,,,,,34,36,"79FB3E",,,,,,,,,,, 77510,11,12,2023,523,7,3,61,"DO","M","Z",,,,,,,35,41,"797C2A",,,,,,,,,,, 77511,11,12,2023,523,7,,76,"DM","M","Z",,,,,,,35,41,"C2DBFC","*",,,,,,,,,, 77512,11,12,2023,523,7,3,71,"DM","F","Z",,,,,,,34,39,"05C453",,,,,,,,,,, @@ -77471,7 +77471,7 @@ 77574,12,9,2023,524,6,,22,"OT","F","Z",,,,,,,19,19,"05C496",,,,,,,,,,, 77575,12,9,2023,524,6,,52,"DM","F","Z",,,,,,,35,40,"7969A2",,,,,,,,,,, 77576,12,9,2023,524,6,,71,"DM","M","Z",,,,,,,35,39,"4B6FC4",,,,,,,,,,, -77577,12,9,2023,524,24,,17,"RF","F","Z",,,,,,,20,18,"05BC9D","*",,,,,,,,,, +77577,12,9,2023,524,24,,17,"PE","F","Z",,,,,,,20,18,"05BC9D","*",,,,,,,,,, 77578,12,9,2023,524,24,,22,"DO","F","Z",,,,,,,35,50,"7972C4",,,,,,,,,,, 77579,12,9,2023,524,24,,54,"DM","F","Z",,,,,,,35,37,"BF1937",,,,,,,,,,, 77580,12,9,2023,524,24,,21,"OT","F","Z",,,,,,,19,21,"05BC0F",,,,,,,,,,, @@ -77603,3 +77603,147 @@ 77706,12,10,2023,524,9,,47,"OT","F","Z",,,,,,,19,25,"05C48C",,,,,,,,,"R",, 77707,12,10,2023,524,9,,62,"RM","M","Z",,,,,,,15,10,,,,,,,,,,"R",, 77708,12,10,2023,524,3,,56,"DM","F","Z",,,,,,,33,40,,,,,,,,,,"R",, 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+77843,1,7,2024,525,17,,37,"DM","F","Z",,,,,,,34,50,"05BC3E","*",,,,,,,,,, +77844,1,7,2024,525,17,,51,"OT","F","Z",,,,,,,19,19,"79FBCB",,,,,,,,,,, +77845,1,7,2024,525,17,,21,"DM","M","Z",,,,,,,35,42,"05BCA7","*",,,,,,,,,, +77846,1,7,2024,525,16,,67,"PE","M","Z",,,,,,,18,18,"BEF3E0",,,,,,,,,"R",, +77847,1,7,2024,525,16,,27,"RM","M","Z",,,,,,,15,10,,,,,,,,,,"R",, +77848,1,7,2024,525,16,,17,"PE","M",,"J",,,,,,17,14,,,,,,,,,,"R",, +77849,1,7,2024,525,15,,32,"DM","M",,,"M",,,,,35,43,,,,,,,,,,"R",, +77850,1,7,2024,525,3,,26,"DM","F","Z",,,,,,,32,43,,,,,,,,,,"R",, +77851,1,7,2024,525,9,4,,,,,,,,,,,,,,,,,,,,,,,, +77852,1,7,2024,525,10,4,,,,,,,,,,,,,,,,,,,,,,,, From 70ee4e82458500d852995717a57c1c9cc52f568f Mon Sep 17 00:00:00 2001 From: Pat Dumandan Date: Thu, 8 Feb 2024 08:34:20 -0500 Subject: [PATCH 3/4] re-run workflow [minor] --- DataCleaningScripts/new_rodent_data.r | 1 - 1 file changed, 1 deletion(-) diff --git a/DataCleaningScripts/new_rodent_data.r b/DataCleaningScripts/new_rodent_data.r index 0590a51c..5dcb60d2 100644 --- a/DataCleaningScripts/new_rodent_data.r +++ b/DataCleaningScripts/new_rodent_data.r @@ -58,7 +58,6 @@ speciesnorms$wgt.max = NA speciesnorms$hfl.min = NA speciesnorms$hfl.max = NA - for (i in 1:nrow(speciesnorms)) { this.sp = filter(olddat, species == speciesnorms$species[i]) From f29f7c01c381354d4c8f944daa9af95a7cd4ff2f Mon Sep 17 00:00:00 2001 From: Pat Dumandan Date: Thu, 29 Feb 2024 07:00:27 -0500 Subject: [PATCH 4/4] change C2DD92 species ID in 525 [minor] --- Rodents/Portal_rodent.csv | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/Rodents/Portal_rodent.csv b/Rodents/Portal_rodent.csv index 2805ec15..c5c16af3 100644 --- a/Rodents/Portal_rodent.csv +++ b/Rodents/Portal_rodent.csv @@ -77675,8 +77675,8 @@ 77778,1,6,2024,525,12,,23,"OT","F","Z",,,,,,,18,22,"05C4A2",,,,,,,,,"R",, 77779,1,6,2024,525,12,,15,"RM","M","Z",,,,,,,16,11,,,,,,,,,,"R",, 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