airplane_config.yml

# A yaml file that contains the configuration for the pipeline

# Remote server for image hosting
user: 'ben'
host: 'serenity.ifas.ufl.edu'
key_filename: '/home/b.weinstein/.ssh/id_rsa.pub'
folder_name: '/pgsql/retrieverdash/everglades-label-studio/everglades-data'

# Model Training
# Model checkpoints are saved in the checkpoint_dir, model_checkpoint is the path to the model checkpoint and is honored first
model_checkpoint: '/blue/ewhite/everglades/Zooniverse//20230426_082517/species_model.pl'
test_csv: '/blue/ewhite/everglades/Zooniverse/cleaned_test/test_resized_no_nan.csv'
images_to_annotate_dir: '/blue/ewhite/everglades/label_studio/airplane/images_to_annotate'
checkpoint_dir: '/blue/ewhite/everglades/Zooniverse/'
train_csv_folder: /blue/ewhite/everglades/label_studio/airplane/annotated_images/csvs
comet_workspace: "bw4sz"
comet_project: "everglades-airplane"

# Active learning
annotated_images_dir: '/blue/ewhite/everglades/label_studio/airplane/annotated_images'
#annotation_csv: /blue/ewhite/everglades/label_studio/airplane/annotated_images/train_20231214_093907.csv
annotation_csv:
patch_size: 1500
patch_overlap: 0.05
min_score: 0.3
strategy: 'most-detections'
# Number of images to select for annotation
n_images: 10

# Label studio
label-studio-url: "https://labelstudio.naturecast.org/"
label_studio_project_name: "Everglades Airplane Model"
labels:
  - 'Great Egret'
  - 'Roseate Spoonbill'
  - 'White Ibis'
  - 'Great Blue Heron'
  - 'Wood Stork'
  - 'Snowy Egret'
  - 'Anhinga'

# Debugging
force_run: False
skip_train: True