diff --git a/bugsigdb_signatures_genus_metaphlan.gmt b/bugsigdb_signatures_genus_metaphlan.gmt index 84279ffdc..4da59c754 100644 --- a/bugsigdb_signatures_genus_metaphlan.gmt +++ b/bugsigdb_signatures_genus_metaphlan.gmt @@ -1,4 +1,4 @@ -# BugSigDB 2025-01-25_15:58_UTC, License: Creative Commons Attribution 4.0 International, URL: https://bugsigdb.org +# BugSigDB 2025-01-26_10:58_UTC, License: Creative Commons Attribution 4.0 International, URL: https://bugsigdb.org bsdb:1/1/1_Colorectal-adenoma:conventional-adenoma-cases_vs_controls_UP NA k__Bacteria|p__Actinomycetota|c__Actinomycetes|o__Actinomycetales|f__Actinomycetaceae|g__Actinomyces k__Bacteria|p__Actinomycetota|c__Actinomycetes|o__Mycobacteriales|f__Corynebacteriaceae|g__Corynebacterium k__Bacteria|p__Bacillota|c__Bacilli|o__Lactobacillales|f__Streptococcaceae|g__Streptococcus k__Bacteria|p__Bacillota|c__Tissierellia|o__Tissierellales|f__Peptoniphilaceae|g__Peptoniphilus k__Bacteria|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Dorea k__Bacteria|p__Bacillota|c__Negativicutes|o__Acidaminococcales|f__Acidaminococcaceae|g__Phascolarctobacterium k__Bacteria|p__Pseudomonadota|c__Betaproteobacteria|o__Burkholderiales|f__Sutterellaceae|g__Sutterella k__Bacteria|p__Bacillota|c__Bacilli|o__Lactobacillales|f__Lactobacillaceae|g__Lacticaseibacillus k__Bacteria|p__Bacillota|c__Bacilli|o__Bacillales|f__Bacillaceae|g__Bacillus bsdb:1/1/2_Colorectal-adenoma:conventional-adenoma-cases_vs_controls_DOWN NA k__Bacteria|p__Bacillota|c__Erysipelotrichia|o__Erysipelotrichales|f__Coprobacillaceae|g__Coprobacillus bsdb:1/2/1_Hyperplastic-Polyp:hyperplastic-polyp-cases_vs_controls_UP NA k__Bacteria|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Anaerostipes k__Bacteria|p__Bacillota|c__Bacilli|o__Lactobacillales|f__Lactobacillaceae|g__Lacticaseibacillus @@ -4111,162 +4111,6 @@ bsdb:1048/44/1_Microbiome:Unspiked-pig-feces(P1)-at-16-hours-(5°C)_vs_Unspiked- bsdb:1048/44/2_Microbiome:Unspiked-pig-feces(P1)-at-16-hours-(5°C)_vs_Unspiked-pig-feces(P1)-at-16-hours-(-80°C)_DOWN NA k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella k__Bacteria|p__Bacillota|c__Negativicutes|o__Acidaminococcales|f__Acidaminococcaceae|g__Phascolarctobacterium bsdb:1048/45/1_Microbiome:Unspiked-pig-feces(P1)-at-64-hours-(5°C)_vs_Unspiked-pig-feces(P1)-at-16-hours-(-80°C)_UP NA k__Bacteria|p__Spirochaetota|c__Spirochaetia|o__Spirochaetales|f__Treponemataceae|g__Treponema k__Bacteria|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Faecalibacterium k__Bacteria|p__Bacillota|c__Negativicutes|o__Acidaminococcales|f__Acidaminococcaceae|g__Phascolarctobacterium k__Bacteria|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Roseburia bsdb:1048/45/2_Microbiome:Unspiked-pig-feces(P1)-at-64-hours-(5°C)_vs_Unspiked-pig-feces(P1)-at-16-hours-(-80°C)_DOWN NA k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella -bsdb:1048/46/1_Microbiome:Unspiked-pig-feces(P1)-at-16-hours-(22°C)_vs_Unspiked-pig-feces(P1)-at-16-hours-(-80°C)_UP NA k__Bacteria|p__Spirochaetota|c__Spirochaetia|o__Spirochaetales|f__Treponemataceae|g__Treponema k__Bacteria|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Faecalibacterium k__Bacteria|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Roseburia -bsdb:1048/46/2_Microbiome:Unspiked-pig-feces(P1)-at-16-hours-(22°C)_vs_Unspiked-pig-feces(P1)-at-16-hours-(-80°C)_DOWN NA k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella k__Bacteria|p__Bacillota|c__Negativicutes|o__Acidaminococcales|f__Acidaminococcaceae|g__Phascolarctobacterium -bsdb:1048/47/1_Microbiome:Unspiked-pig-feces(P1)-at-64-hours-(22°C)_vs_Unspiked-pig-feces(P1)-at-16-hours-(-80°C)_UP NA k__Bacteria|p__Spirochaetota|c__Spirochaetia|o__Spirochaetales|f__Treponemataceae|g__Treponema k__Bacteria|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Faecalibacterium -bsdb:1048/47/2_Microbiome:Unspiked-pig-feces(P1)-at-64-hours-(22°C)_vs_Unspiked-pig-feces(P1)-at-16-hours-(-80°C)_DOWN NA k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella -bsdb:1048/48/1_Microbiome:Unspiked-pig-feces(P1)-at-16-hours-(-20°C)_vs_Unspiked-pig-feces(P1)-at-64-hours-(-80°C)_UP NA k__Bacteria|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Faecalibacterium k__Bacteria|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Roseburia -bsdb:1048/48/2_Microbiome:Unspiked-pig-feces(P1)-at-16-hours-(-20°C)_vs_Unspiked-pig-feces(P1)-at-64-hours-(-80°C)_DOWN NA k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella k__Bacteria|p__Spirochaetota|c__Spirochaetia|o__Spirochaetales|f__Treponemataceae|g__Treponema k__Bacteria|p__Bacillota|c__Negativicutes|o__Acidaminococcales|f__Acidaminococcaceae|g__Phascolarctobacterium -bsdb:1048/49/1_Microbiome:Unspiked-pig-feces(P1)-at-64-hours-(-20°C)_vs_Unspiked-pig-feces(P1)-at-64-hours-(-80°C)_UP NA k__Bacteria|p__Spirochaetota|c__Spirochaetia|o__Spirochaetales|f__Treponemataceae|g__Treponema k__Bacteria|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Faecalibacterium k__Bacteria|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Roseburia -bsdb:1048/49/2_Microbiome:Unspiked-pig-feces(P1)-at-64-hours-(-20°C)_vs_Unspiked-pig-feces(P1)-at-64-hours-(-80°C)_DOWN NA k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella k__Bacteria|p__Bacillota|c__Negativicutes|o__Acidaminococcales|f__Acidaminococcaceae|g__Phascolarctobacterium -bsdb:1048/50/1_Microbiome:Unspiked-pig-feces(P1)-at-16-hours-(5°C)_vs_Unspiked-pig-feces(P1)-at-64-hours-(-80°C)_UP NA k__Bacteria|p__Spirochaetota|c__Spirochaetia|o__Spirochaetales|f__Treponemataceae|g__Treponema k__Bacteria|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Faecalibacterium k__Bacteria|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Roseburia -bsdb:1048/50/2_Microbiome:Unspiked-pig-feces(P1)-at-16-hours-(5°C)_vs_Unspiked-pig-feces(P1)-at-64-hours-(-80°C)_DOWN NA k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella k__Bacteria|p__Bacillota|c__Negativicutes|o__Acidaminococcales|f__Acidaminococcaceae|g__Phascolarctobacterium -bsdb:1048/51/1_Microbiome:Unspiked-pig-feces(P1)-at-64-hours-(5°C)_vs_Unspiked-pig-feces(P1)-at-64-hours-(-80°C)_UP NA k__Bacteria|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Faecalibacterium k__Bacteria|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Roseburia -bsdb:1048/51/2_Microbiome:Unspiked-pig-feces(P1)-at-64-hours-(5°C)_vs_Unspiked-pig-feces(P1)-at-64-hours-(-80°C)_DOWN NA k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella k__Bacteria|p__Spirochaetota|c__Spirochaetia|o__Spirochaetales|f__Treponemataceae|g__Treponema k__Bacteria|p__Bacillota|c__Negativicutes|o__Acidaminococcales|f__Acidaminococcaceae|g__Phascolarctobacterium -bsdb:1048/52/1_Microbiome:Unspiked-pig-feces(P1)-at-16-hours-(22°C)_vs_Unspiked-pig-feces(P1)-at-64-hours-(-80°C)_UP NA k__Bacteria|p__Spirochaetota|c__Spirochaetia|o__Spirochaetales|f__Treponemataceae|g__Treponema k__Bacteria|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Faecalibacterium k__Bacteria|p__Bacillota|c__Negativicutes|o__Acidaminococcales|f__Acidaminococcaceae|g__Phascolarctobacterium k__Bacteria|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Roseburia -bsdb:1048/52/2_Microbiome:Unspiked-pig-feces(P1)-at-16-hours-(22°C)_vs_Unspiked-pig-feces(P1)-at-64-hours-(-80°C)_DOWN NA k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella -bsdb:1048/53/1_Microbiome:Unspiked-pig-feces(P1)-at-64-hours-(22°C)_vs_Unspiked-pig-feces(P1)-at-64-hours-(-80°C)_UP NA k__Bacteria|p__Spirochaetota|c__Spirochaetia|o__Spirochaetales|f__Treponemataceae|g__Treponema k__Bacteria|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Faecalibacterium k__Bacteria|p__Bacillota|c__Negativicutes|o__Acidaminococcales|f__Acidaminococcaceae|g__Phascolarctobacterium k__Bacteria|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Roseburia -bsdb:1048/53/2_Microbiome:Unspiked-pig-feces(P1)-at-64-hours-(22°C)_vs_Unspiked-pig-feces(P1)-at-64-hours-(-80°C)_DOWN NA k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella -bsdb:1048/54/1_Microbiome:Unspiked-pig-feces(P1)-at-64-hours-(-20°C)_vs_Unspiked-pig-feces(P1)-at-16-hours-(-20°C)_UP NA k__Bacteria|p__Spirochaetota|c__Spirochaetia|o__Spirochaetales|f__Treponemataceae|g__Treponema -bsdb:1048/54/2_Microbiome:Unspiked-pig-feces(P1)-at-64-hours-(-20°C)_vs_Unspiked-pig-feces(P1)-at-16-hours-(-20°C)_DOWN NA k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella k__Bacteria|p__Bacillota|c__Negativicutes|o__Acidaminococcales|f__Acidaminococcaceae|g__Phascolarctobacterium k__Bacteria|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Faecalibacterium k__Bacteria|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Roseburia -bsdb:1048/55/1_Microbiome:Unspiked-pig-feces(P1)-at-16-hours-(5°C)_vs_Unspiked-pig-feces(P1)-at-16-hours-(-20°C)_UP NA k__Bacteria|p__Spirochaetota|c__Spirochaetia|o__Spirochaetales|f__Treponemataceae|g__Treponema k__Bacteria|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Faecalibacterium k__Bacteria|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Roseburia -bsdb:1048/55/2_Microbiome:Unspiked-pig-feces(P1)-at-16-hours-(5°C)_vs_Unspiked-pig-feces(P1)-at-16-hours-(-20°C)_DOWN NA k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella k__Bacteria|p__Bacillota|c__Negativicutes|o__Acidaminococcales|f__Acidaminococcaceae|g__Phascolarctobacterium -bsdb:1048/56/1_Microbiome:Unspiked-pig-feces(P1)-at-64-hours-(5°C)_vs_Unspiked-pig-feces(P1)-at-16-hours-(-20°C)_UP NA k__Bacteria|p__Spirochaetota|c__Spirochaetia|o__Spirochaetales|f__Treponemataceae|g__Treponema k__Bacteria|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Faecalibacterium k__Bacteria|p__Bacillota|c__Negativicutes|o__Acidaminococcales|f__Acidaminococcaceae|g__Phascolarctobacterium k__Bacteria|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Roseburia -bsdb:1048/56/2_Microbiome:Unspiked-pig-feces(P1)-at-64-hours-(5°C)_vs_Unspiked-pig-feces(P1)-at-16-hours-(-20°C)_DOWN NA k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella -bsdb:1048/57/1_Microbiome:Unspiked-pig-feces(P1)-at-16-hours-(22°C)_vs_Unspiked-pig-feces(P1)-at-16-hours-(-20°C)_UP NA k__Bacteria|p__Spirochaetota|c__Spirochaetia|o__Spirochaetales|f__Treponemataceae|g__Treponema k__Bacteria|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Faecalibacterium k__Bacteria|p__Bacillota|c__Negativicutes|o__Acidaminococcales|f__Acidaminococcaceae|g__Phascolarctobacterium k__Bacteria|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Roseburia -bsdb:1048/57/2_Microbiome:Unspiked-pig-feces(P1)-at-16-hours-(22°C)_vs_Unspiked-pig-feces(P1)-at-16-hours-(-20°C)_DOWN NA k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella -bsdb:1048/58/1_Microbiome:Unspiked-pig-feces(P1)-at-64-hours-(22°C)_vs_Unspiked-pig-feces(P1)-at-16-hours-(-20°C)_UP NA k__Bacteria|p__Spirochaetota|c__Spirochaetia|o__Spirochaetales|f__Treponemataceae|g__Treponema k__Bacteria|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Faecalibacterium k__Bacteria|p__Bacillota|c__Negativicutes|o__Acidaminococcales|f__Acidaminococcaceae|g__Phascolarctobacterium k__Bacteria|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Roseburia -bsdb:1048/58/2_Microbiome:Unspiked-pig-feces(P1)-at-64-hours-(22°C)_vs_Unspiked-pig-feces(P1)-at-16-hours-(-20°C)_DOWN NA k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella -bsdb:1048/62/1_Microbiome:Unspiked-pig-feces(P1)-at-16-hours-(5°C)_vs_Unspiked-pig-feces(P1)-at-64-hours-(-20°C)_UP NA k__Bacteria|p__Spirochaetota|c__Spirochaetia|o__Spirochaetales|f__Treponemataceae|g__Treponema k__Bacteria|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Faecalibacterium -bsdb:1048/62/2_Microbiome:Unspiked-pig-feces(P1)-at-16-hours-(5°C)_vs_Unspiked-pig-feces(P1)-at-64-hours-(-20°C)_DOWN NA k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella k__Bacteria|p__Bacillota|c__Negativicutes|o__Acidaminococcales|f__Acidaminococcaceae|g__Phascolarctobacterium k__Bacteria|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Roseburia -bsdb:1048/64/1_Microbiome:Unspiked-pig-feces(P1)-at-64-hours-(5°C)_vs_Unspiked-pig-feces(P1)-at-64-hours-(-20°C)_UP NA k__Bacteria|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Faecalibacterium k__Bacteria|p__Bacillota|c__Negativicutes|o__Acidaminococcales|f__Acidaminococcaceae|g__Phascolarctobacterium k__Bacteria|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Roseburia -bsdb:1048/64/2_Microbiome:Unspiked-pig-feces(P1)-at-64-hours-(5°C)_vs_Unspiked-pig-feces(P1)-at-64-hours-(-20°C)_DOWN NA k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella k__Bacteria|p__Spirochaetota|c__Spirochaetia|o__Spirochaetales|f__Treponemataceae|g__Treponema -bsdb:1048/65/1_Microbiome:Unspiked-pig-feces(P1)-at-16-hours-(22°C)_vs_Unspiked-pig-feces(P1)-at-64-hours-(-20°C)_UP NA k__Bacteria|p__Spirochaetota|c__Spirochaetia|o__Spirochaetales|f__Treponemataceae|g__Treponema k__Bacteria|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Faecalibacterium k__Bacteria|p__Bacillota|c__Negativicutes|o__Acidaminococcales|f__Acidaminococcaceae|g__Phascolarctobacterium k__Bacteria|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Roseburia -bsdb:1048/65/2_Microbiome:Unspiked-pig-feces(P1)-at-16-hours-(22°C)_vs_Unspiked-pig-feces(P1)-at-64-hours-(-20°C)_DOWN NA k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella -bsdb:1048/66/1_Microbiome:Unspiked-pig-feces(P1)-at-64-hours-(22°C)_vs_Unspiked-pig-feces(P1)-at-64-hours-(-20°C)_UP NA k__Bacteria|p__Spirochaetota|c__Spirochaetia|o__Spirochaetales|f__Treponemataceae|g__Treponema k__Bacteria|p__Bacillota|c__Negativicutes|o__Acidaminococcales|f__Acidaminococcaceae|g__Phascolarctobacterium k__Bacteria|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Faecalibacterium k__Bacteria|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Roseburia -bsdb:1048/66/2_Microbiome:Unspiked-pig-feces(P1)-at-64-hours-(22°C)_vs_Unspiked-pig-feces(P1)-at-64-hours-(-20°C)_DOWN NA k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella -bsdb:1048/67/1_Microbiome:Unspiked-pig-feces(P1)-at-64-hours-(5°C)_vs_Unspiked-pig-feces(P1)-at-16-hours-(5°C)_UP NA k__Bacteria|p__Spirochaetota|c__Spirochaetia|o__Spirochaetales|f__Treponemataceae|g__Treponema k__Bacteria|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Faecalibacterium k__Bacteria|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Roseburia -bsdb:1048/67/2_Microbiome:Unspiked-pig-feces(P1)-at-64-hours-(5°C)_vs_Unspiked-pig-feces(P1)-at-16-hours-(5°C)_DOWN NA k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella k__Bacteria|p__Bacillota|c__Negativicutes|o__Acidaminococcales|f__Acidaminococcaceae|g__Phascolarctobacterium -bsdb:1048/68/1_Microbiome:Unspiked-pig-feces(P1)-at-16-hours-(22°C)_vs_Unspiked-pig-feces(P1)-at-16-hours-(5°C)_UP NA k__Bacteria|p__Spirochaetota|c__Spirochaetia|o__Spirochaetales|f__Treponemataceae|g__Treponema k__Bacteria|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Faecalibacterium k__Bacteria|p__Bacillota|c__Negativicutes|o__Acidaminococcales|f__Acidaminococcaceae|g__Phascolarctobacterium k__Bacteria|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Roseburia -bsdb:1048/68/2_Microbiome:Unspiked-pig-feces(P1)-at-16-hours-(22°C)_vs_Unspiked-pig-feces(P1)-at-16-hours-(5°C)_DOWN NA k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella -bsdb:1048/69/1_Microbiome:Unspiked-pig-feces(P1)-at-64-hours-(22°C)_vs_Unspiked-pig-feces(P1)-at-16-hours-(5°C)_UP NA k__Bacteria|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Faecalibacterium k__Bacteria|p__Bacillota|c__Negativicutes|o__Acidaminococcales|f__Acidaminococcaceae|g__Phascolarctobacterium k__Bacteria|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Roseburia -bsdb:1048/69/2_Microbiome:Unspiked-pig-feces(P1)-at-64-hours-(22°C)_vs_Unspiked-pig-feces(P1)-at-16-hours-(5°C)_DOWN NA k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella k__Bacteria|p__Spirochaetota|c__Spirochaetia|o__Spirochaetales|f__Treponemataceae|g__Treponema -bsdb:1048/70/1_Microbiome:Unspiked-pig-feces(P1)-at-16-hours-(22°C)_vs_Unspiked-pig-feces(P1)-at-64-hours-(5°C)_UP NA k__Bacteria|p__Spirochaetota|c__Spirochaetia|o__Spirochaetales|f__Treponemataceae|g__Treponema k__Bacteria|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Faecalibacterium -bsdb:1048/70/2_Microbiome:Unspiked-pig-feces(P1)-at-16-hours-(22°C)_vs_Unspiked-pig-feces(P1)-at-64-hours-(5°C)_DOWN NA k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella k__Bacteria|p__Bacillota|c__Negativicutes|o__Acidaminococcales|f__Acidaminococcaceae|g__Phascolarctobacterium k__Bacteria|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Roseburia -bsdb:1048/71/1_Microbiome:Unspiked-pig-feces(P1)-at-64-hours-(22°C)_vs_Unspiked-pig-feces(P1)-at-64-hours-(5°C)_UP NA k__Bacteria|p__Spirochaetota|c__Spirochaetia|o__Spirochaetales|f__Treponemataceae|g__Treponema k__Bacteria|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Faecalibacterium -bsdb:1048/71/2_Microbiome:Unspiked-pig-feces(P1)-at-64-hours-(22°C)_vs_Unspiked-pig-feces(P1)-at-64-hours-(5°C)_DOWN NA k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella k__Bacteria|p__Bacillota|c__Negativicutes|o__Acidaminococcales|f__Acidaminococcaceae|g__Phascolarctobacterium k__Bacteria|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Roseburia -bsdb:1048/72/1_Microbiome:Unspiked-pig-feces(P1)-at-64-hours-(22°C)_vs_Unspiked-pig-feces(P1)-at-16-hours-(22°C)_UP NA k__Bacteria|p__Spirochaetota|c__Spirochaetia|o__Spirochaetales|f__Treponemataceae|g__Treponema k__Bacteria|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Faecalibacterium -bsdb:1048/72/2_Microbiome:Unspiked-pig-feces(P1)-at-64-hours-(22°C)_vs_Unspiked-pig-feces(P1)-at-16-hours-(22°C)_DOWN NA k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella k__Bacteria|p__Bacillota|c__Negativicutes|o__Acidaminococcales|f__Acidaminococcaceae|g__Phascolarctobacterium k__Bacteria|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Roseburia -bsdb:1048/109/1_Microbiome:Unspiked-pig-feces(P2)-at-16-hours-(-80°C)_vs_Unspiked-pig-feces(P2)-at-0-hour_UP NA k__Bacteria|p__Bacillota|c__Negativicutes|o__Acidaminococcales|f__Acidaminococcaceae|g__Phascolarctobacterium k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella k__Bacteria|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Roseburia -bsdb:1048/109/2_Microbiome:Unspiked-pig-feces(P2)-at-16-hours-(-80°C)_vs_Unspiked-pig-feces(P2)-at-0-hour_DOWN NA k__Bacteria|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Faecalibacterium k__Bacteria|p__Spirochaetota|c__Spirochaetia|o__Spirochaetales|f__Treponemataceae|g__Treponema -bsdb:1048/110/1_Microbiome:Unspiked-pig-feces(P2)-at-64-hours-(-80°C)_vs_Unspiked-pig-feces(P2)-at-0-hour_UP NA k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella -bsdb:1048/110/2_Microbiome:Unspiked-pig-feces(P2)-at-64-hours-(-80°C)_vs_Unspiked-pig-feces(P2)-at-0-hour_DOWN NA k__Bacteria|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Faecalibacterium k__Bacteria|p__Bacillota|c__Negativicutes|o__Acidaminococcales|f__Acidaminococcaceae|g__Phascolarctobacterium k__Bacteria|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Roseburia k__Bacteria|p__Spirochaetota|c__Spirochaetia|o__Spirochaetales|f__Treponemataceae|g__Treponema -bsdb:1048/111/1_Microbiome:Unspiked-pig-feces(P2)-at-16-hours-(-20°C)_vs_Unspiked-pig-feces(P2)-at-0-hour_UP NA k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella k__Bacteria|p__Bacillota|c__Negativicutes|o__Acidaminococcales|f__Acidaminococcaceae|g__Phascolarctobacterium k__Bacteria|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Roseburia -bsdb:1048/111/2_Microbiome:Unspiked-pig-feces(P2)-at-16-hours-(-20°C)_vs_Unspiked-pig-feces(P2)-at-0-hour_DOWN NA k__Bacteria|p__Spirochaetota|c__Spirochaetia|o__Spirochaetales|f__Treponemataceae|g__Treponema k__Bacteria|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Faecalibacterium -bsdb:1048/112/1_Microbiome:Unspiked-pig-feces(P2)-at-64-hours-(-20°C)_vs_Unspiked-pig-feces(P2)-at-0-hour_UP NA k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella k__Bacteria|p__Bacillota|c__Negativicutes|o__Acidaminococcales|f__Acidaminococcaceae|g__Phascolarctobacterium -bsdb:1048/112/2_Microbiome:Unspiked-pig-feces(P2)-at-64-hours-(-20°C)_vs_Unspiked-pig-feces(P2)-at-0-hour_DOWN NA k__Bacteria|p__Spirochaetota|c__Spirochaetia|o__Spirochaetales|f__Treponemataceae|g__Treponema k__Bacteria|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Faecalibacterium k__Bacteria|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Roseburia -bsdb:1048/113/1_Microbiome:Unspiked-pig-feces(P2)-at-16-hours-(5°C)_vs_Unspiked-pig-feces(P2)-at-0-hour_UP NA k__Bacteria|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Faecalibacterium k__Bacteria|p__Bacillota|c__Negativicutes|o__Acidaminococcales|f__Acidaminococcaceae|g__Phascolarctobacterium k__Bacteria|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Roseburia -bsdb:1048/113/2_Microbiome:Unspiked-pig-feces(P2)-at-16-hours-(5°C)_vs_Unspiked-pig-feces(P2)-at-0-hour_DOWN NA k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella k__Bacteria|p__Spirochaetota|c__Spirochaetia|o__Spirochaetales|f__Treponemataceae|g__Treponema -bsdb:1048/114/1_Microbiome:Unspiked-pig-feces(P2)-at-64-hours-(5°C)_vs_Unspiked-pig-feces(P2)-at-0-hour_UP NA k__Bacteria|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Faecalibacterium k__Bacteria|p__Bacillota|c__Negativicutes|o__Acidaminococcales|f__Acidaminococcaceae|g__Phascolarctobacterium k__Bacteria|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Roseburia -bsdb:1048/114/2_Microbiome:Unspiked-pig-feces(P2)-at-64-hours-(5°C)_vs_Unspiked-pig-feces(P2)-at-0-hour_DOWN NA k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella k__Bacteria|p__Spirochaetota|c__Spirochaetia|o__Spirochaetales|f__Treponemataceae|g__Treponema -bsdb:1048/115/1_Microbiome:Unspiked-pig-feces(P2)-at-16-hours-(22°C)_vs_Unspiked-pig-feces(P2)-at-0-hour_UP NA k__Bacteria|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Faecalibacterium k__Bacteria|p__Bacillota|c__Negativicutes|o__Acidaminococcales|f__Acidaminococcaceae|g__Phascolarctobacterium k__Bacteria|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Roseburia -bsdb:1048/115/2_Microbiome:Unspiked-pig-feces(P2)-at-16-hours-(22°C)_vs_Unspiked-pig-feces(P2)-at-0-hour_DOWN NA k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella k__Bacteria|p__Spirochaetota|c__Spirochaetia|o__Spirochaetales|f__Treponemataceae|g__Treponema -bsdb:1048/116/1_Microbiome:Unspiked-pig-feces(P2)-at-64-hours-(22°C)_vs_Unspiked-pig-feces(P2)-at-0-hour_UP NA k__Bacteria|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Faecalibacterium k__Bacteria|p__Bacillota|c__Negativicutes|o__Acidaminococcales|f__Acidaminococcaceae|g__Phascolarctobacterium k__Bacteria|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Roseburia -bsdb:1048/116/2_Microbiome:Unspiked-pig-feces(P2)-at-64-hours-(22°C)_vs_Unspiked-pig-feces(P2)-at-0-hour_DOWN NA k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella k__Bacteria|p__Spirochaetota|c__Spirochaetia|o__Spirochaetales|f__Treponemataceae|g__Treponema -bsdb:1048/117/1_Microbiome:Unspiked-pig-feces(P2)-at-64-hours-(80°C)_vs_Unspiked-pig-feces(P2)-at-16-hours-(-80°C)_UP NA k__Bacteria|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Faecalibacterium -bsdb:1048/117/2_Microbiome:Unspiked-pig-feces(P2)-at-64-hours-(80°C)_vs_Unspiked-pig-feces(P2)-at-16-hours-(-80°C)_DOWN NA k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella k__Bacteria|p__Spirochaetota|c__Spirochaetia|o__Spirochaetales|f__Treponemataceae|g__Treponema k__Bacteria|p__Bacillota|c__Negativicutes|o__Acidaminococcales|f__Acidaminococcaceae|g__Phascolarctobacterium k__Bacteria|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Roseburia -bsdb:1048/118/1_Microbiome:Unspiked-pig-feces(P2)-at-16-hours-(-20°C)_vs_Unspiked-pig-feces(P2)-at-16-hours-(-80°C)_UP NA k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella k__Bacteria|p__Bacillota|c__Negativicutes|o__Acidaminococcales|f__Acidaminococcaceae|g__Phascolarctobacterium -bsdb:1048/118/2_Microbiome:Unspiked-pig-feces(P2)-at-16-hours-(-20°C)_vs_Unspiked-pig-feces(P2)-at-16-hours-(-80°C)_DOWN NA k__Bacteria|p__Spirochaetota|c__Spirochaetia|o__Spirochaetales|f__Treponemataceae|g__Treponema k__Bacteria|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Faecalibacterium k__Bacteria|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Roseburia -bsdb:1048/119/1_Microbiome:Unspiked-pig-feces(P2)-at-64-hours-(-20°C)_vs_Unspiked-pig-feces(P2)-at-16-hours-(-80°C)_UP NA k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella k__Bacteria|p__Bacillota|c__Negativicutes|o__Acidaminococcales|f__Acidaminococcaceae|g__Phascolarctobacterium -bsdb:1048/119/2_Microbiome:Unspiked-pig-feces(P2)-at-64-hours-(-20°C)_vs_Unspiked-pig-feces(P2)-at-16-hours-(-80°C)_DOWN NA k__Bacteria|p__Spirochaetota|c__Spirochaetia|o__Spirochaetales|f__Treponemataceae|g__Treponema k__Bacteria|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Faecalibacterium k__Bacteria|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Roseburia -bsdb:1048/120/1_Microbiome:Unspiked-pig-feces(P2)-at-16-hours-(5°C)_vs_Unspiked-pig-feces(P2)-at-16-hours-(-80°C)_UP NA k__Bacteria|p__Spirochaetota|c__Spirochaetia|o__Spirochaetales|f__Treponemataceae|g__Treponema k__Bacteria|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Faecalibacterium k__Bacteria|p__Bacillota|c__Negativicutes|o__Acidaminococcales|f__Acidaminococcaceae|g__Phascolarctobacterium k__Bacteria|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Roseburia -bsdb:1048/120/2_Microbiome:Unspiked-pig-feces(P2)-at-16-hours-(5°C)_vs_Unspiked-pig-feces(P2)-at-16-hours-(-80°C)_DOWN NA k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella -bsdb:1048/121/1_Microbiome:Unspiked-pig-feces(P2)-at-64-hours-(5°C)_vs_Unspiked-pig-feces(P2)-at-16-hours-(-80°C)_UP NA k__Bacteria|p__Spirochaetota|c__Spirochaetia|o__Spirochaetales|f__Treponemataceae|g__Treponema k__Bacteria|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Faecalibacterium k__Bacteria|p__Bacillota|c__Negativicutes|o__Acidaminococcales|f__Acidaminococcaceae|g__Phascolarctobacterium k__Bacteria|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Roseburia -bsdb:1048/121/2_Microbiome:Unspiked-pig-feces(P2)-at-64-hours-(5°C)_vs_Unspiked-pig-feces(P2)-at-16-hours-(-80°C)_DOWN NA k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella -bsdb:1048/122/1_Microbiome:Unspiked-pig-feces(P2)-at-16-hours-(22°C)_vs_Unspiked-pig-feces(P2)-at-16-hours-(-80°C)_UP NA k__Bacteria|p__Spirochaetota|c__Spirochaetia|o__Spirochaetales|f__Treponemataceae|g__Treponema k__Bacteria|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Faecalibacterium k__Bacteria|p__Bacillota|c__Negativicutes|o__Acidaminococcales|f__Acidaminococcaceae|g__Phascolarctobacterium k__Bacteria|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Roseburia -bsdb:1048/122/2_Microbiome:Unspiked-pig-feces(P2)-at-16-hours-(22°C)_vs_Unspiked-pig-feces(P2)-at-16-hours-(-80°C)_DOWN NA k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella -bsdb:1048/123/1_Microbiome:Unspiked-pig-feces(P2)-at-64-hours-(22°C)_vs_Unspiked-pig-feces(P2)-at-16-hours-(-80°C)_UP NA k__Bacteria|p__Spirochaetota|c__Spirochaetia|o__Spirochaetales|f__Treponemataceae|g__Treponema k__Bacteria|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Faecalibacterium k__Bacteria|p__Bacillota|c__Negativicutes|o__Acidaminococcales|f__Acidaminococcaceae|g__Phascolarctobacterium k__Bacteria|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Roseburia -bsdb:1048/123/2_Microbiome:Unspiked-pig-feces(P2)-at-64-hours-(22°C)_vs_Unspiked-pig-feces(P2)-at-16-hours-(-80°C)_DOWN NA k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella -bsdb:1048/124/1_Microbiome:Unspiked-pig-feces(P2)-at-16-hours-(-20°C)_vs_Unspiked-pig-feces(P2)-at-64-hours-(-80°C)_UP NA k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella k__Bacteria|p__Spirochaetota|c__Spirochaetia|o__Spirochaetales|f__Treponemataceae|g__Treponema k__Bacteria|p__Bacillota|c__Negativicutes|o__Acidaminococcales|f__Acidaminococcaceae|g__Phascolarctobacterium k__Bacteria|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Roseburia -bsdb:1048/124/2_Microbiome:Unspiked-pig-feces(P2)-at-16-hours-(-20°C)_vs_Unspiked-pig-feces(P2)-at-64-hours-(-80°C)_DOWN NA k__Bacteria|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Faecalibacterium -bsdb:1048/125/1_Microbiome:Unspiked-pig-feces(P2)-at-64-hours-(-20°C)_vs_Unspiked-pig-feces(P2)-at-64-hours-(-80°C)_UP NA k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella k__Bacteria|p__Spirochaetota|c__Spirochaetia|o__Spirochaetales|f__Treponemataceae|g__Treponema k__Bacteria|p__Bacillota|c__Negativicutes|o__Acidaminococcales|f__Acidaminococcaceae|g__Phascolarctobacterium -bsdb:1048/125/2_Microbiome:Unspiked-pig-feces(P2)-at-64-hours-(-20°C)_vs_Unspiked-pig-feces(P2)-at-64-hours-(-80°C)_DOWN NA k__Bacteria|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Faecalibacterium k__Bacteria|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Roseburia -bsdb:1048/126/1_Microbiome:Unspiked-pig-feces(P2)-at-16-hours-(5°C)_vs_Unspiked-pig-feces(P2)-at-64-hours-(-80°C)_UP NA k__Bacteria|p__Spirochaetota|c__Spirochaetia|o__Spirochaetales|f__Treponemataceae|g__Treponema k__Bacteria|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Faecalibacterium k__Bacteria|p__Bacillota|c__Negativicutes|o__Acidaminococcales|f__Acidaminococcaceae|g__Phascolarctobacterium k__Bacteria|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Roseburia -bsdb:1048/126/2_Microbiome:Unspiked-pig-feces(P2)-at-16-hours-(5°C)_vs_Unspiked-pig-feces(P2)-at-64-hours-(-80°C)_DOWN NA k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella -bsdb:1048/127/1_Microbiome:Unspiked-pig-feces(P2)-at-64-hours-(5°C)_vs_Unspiked-pig-feces(P2)-at-64-hours-(-80°C)_UP NA k__Bacteria|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Faecalibacterium k__Bacteria|p__Bacillota|c__Negativicutes|o__Acidaminococcales|f__Acidaminococcaceae|g__Phascolarctobacterium k__Bacteria|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Roseburia k__Bacteria|p__Spirochaetota|c__Spirochaetia|o__Spirochaetales|f__Treponemataceae|g__Treponema -bsdb:1048/127/2_Microbiome:Unspiked-pig-feces(P2)-at-64-hours-(5°C)_vs_Unspiked-pig-feces(P2)-at-64-hours-(-80°C)_DOWN NA k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella -bsdb:1048/128/1_Microbiome:Unspiked-pig-feces(P2)-at-16-hours-(22°C)_vs_Unspiked-pig-feces(P2)-at-64-hours-(-80°C)_UP NA k__Bacteria|p__Spirochaetota|c__Spirochaetia|o__Spirochaetales|f__Treponemataceae|g__Treponema k__Bacteria|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Faecalibacterium k__Bacteria|p__Bacillota|c__Negativicutes|o__Acidaminococcales|f__Acidaminococcaceae|g__Phascolarctobacterium k__Bacteria|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Roseburia -bsdb:1048/128/2_Microbiome:Unspiked-pig-feces(P2)-at-16-hours-(22°C)_vs_Unspiked-pig-feces(P2)-at-64-hours-(-80°C)_DOWN NA k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella -bsdb:1048/129/1_Microbiome:Unspiked-pig-feces(P2)-at-64-hours-(22°C)_vs_Unspiked-pig-feces(P2)-at-64-hours-(-80°C)_UP NA k__Bacteria|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Faecalibacterium k__Bacteria|p__Bacillota|c__Negativicutes|o__Acidaminococcales|f__Acidaminococcaceae|g__Phascolarctobacterium k__Bacteria|p__Spirochaetota|c__Spirochaetia|o__Spirochaetales|f__Treponemataceae|g__Treponema k__Bacteria|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Roseburia -bsdb:1048/129/2_Microbiome:Unspiked-pig-feces(P2)-at-64-hours-(22°C)_vs_Unspiked-pig-feces(P2)-at-64-hours-(-80°C)_DOWN NA k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella -bsdb:1048/130/1_Microbiome:Unspiked-pig-feces(P2)-at-64-hours-(-20°C)_vs_Unspiked-pig-feces(P2)-at-16-hours-(-20°C)_UP NA k__Bacteria|p__Bacillota|c__Negativicutes|o__Acidaminococcales|f__Acidaminococcaceae|g__Phascolarctobacterium -bsdb:1048/130/2_Microbiome:Unspiked-pig-feces(P2)-at-64-hours-(-20°C)_vs_Unspiked-pig-feces(P2)-at-16-hours-(-20°C)_DOWN NA k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella k__Bacteria|p__Spirochaetota|c__Spirochaetia|o__Spirochaetales|f__Treponemataceae|g__Treponema k__Bacteria|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Faecalibacterium k__Bacteria|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Roseburia -bsdb:1048/131/1_Microbiome:Unspiked-pig-feces(P2)-at-16-hours-(5°C)_vs_Unspiked-pig-feces(P2)-at-16-hours-(-20°C)_UP NA k__Bacteria|p__Spirochaetota|c__Spirochaetia|o__Spirochaetales|f__Treponemataceae|g__Treponema k__Bacteria|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Faecalibacterium k__Bacteria|p__Bacillota|c__Negativicutes|o__Acidaminococcales|f__Acidaminococcaceae|g__Phascolarctobacterium k__Bacteria|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Roseburia -bsdb:1048/131/2_Microbiome:Unspiked-pig-feces(P2)-at-16-hours-(5°C)_vs_Unspiked-pig-feces(P2)-at-16-hours-(-20°C)_DOWN NA k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella -bsdb:1048/132/1_Microbiome:Unspiked-pig-feces(P2)-at-64-hours-(5°C)_vs_Unspiked-pig-feces(P2)-at-16-hours-(-20°C)_UP NA k__Bacteria|p__Spirochaetota|c__Spirochaetia|o__Spirochaetales|f__Treponemataceae|g__Treponema k__Bacteria|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Faecalibacterium k__Bacteria|p__Bacillota|c__Negativicutes|o__Acidaminococcales|f__Acidaminococcaceae|g__Phascolarctobacterium k__Bacteria|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Roseburia -bsdb:1048/132/2_Microbiome:Unspiked-pig-feces(P2)-at-64-hours-(5°C)_vs_Unspiked-pig-feces(P2)-at-16-hours-(-20°C)_DOWN NA k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella -bsdb:1048/133/1_Microbiome:Unspiked-pig-feces(P2)-at-16-hours-(22°C)_vs_Unspiked-pig-feces(P2)-at-16-hours-(-20°C)_UP NA k__Bacteria|p__Spirochaetota|c__Spirochaetia|o__Spirochaetales|f__Treponemataceae|g__Treponema k__Bacteria|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Faecalibacterium k__Bacteria|p__Bacillota|c__Negativicutes|o__Acidaminococcales|f__Acidaminococcaceae|g__Phascolarctobacterium k__Bacteria|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Roseburia -bsdb:1048/133/2_Microbiome:Unspiked-pig-feces(P2)-at-16-hours-(22°C)_vs_Unspiked-pig-feces(P2)-at-16-hours-(-20°C)_DOWN NA k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella -bsdb:1048/134/1_Microbiome:Unspiked-pig-feces(P2)-at-64-hours-(22°C)_vs_Unspiked-pig-feces(P2)-at-16-hours-(-20°C)_UP NA k__Bacteria|p__Spirochaetota|c__Spirochaetia|o__Spirochaetales|f__Treponemataceae|g__Treponema k__Bacteria|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Faecalibacterium k__Bacteria|p__Bacillota|c__Negativicutes|o__Acidaminococcales|f__Acidaminococcaceae|g__Phascolarctobacterium k__Bacteria|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Roseburia -bsdb:1048/134/2_Microbiome:Unspiked-pig-feces(P2)-at-64-hours-(22°C)_vs_Unspiked-pig-feces(P2)-at-16-hours-(-20°C)_DOWN NA k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella -bsdb:1048/135/1_Microbiome:Unspiked-pig-feces(P2)-at-16-hours-(5°C)_vs_Unspiked-pig-feces(P2)-at-64-hours-(-20°C)_UP NA k__Bacteria|p__Spirochaetota|c__Spirochaetia|o__Spirochaetales|f__Treponemataceae|g__Treponema k__Bacteria|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Faecalibacterium k__Bacteria|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Roseburia -bsdb:1048/135/2_Microbiome:Unspiked-pig-feces(P2)-at-16-hours-(5°C)_vs_Unspiked-pig-feces(P2)-at-64-hours-(-20°C)_DOWN NA k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella k__Bacteria|p__Bacillota|c__Negativicutes|o__Acidaminococcales|f__Acidaminococcaceae|g__Phascolarctobacterium -bsdb:1048/136/1_Microbiome:Unspiked-pig-feces(P2)-at-64-hours-(5°C)_vs_Unspiked-pig-feces(P2)-at-64-hours-(-20°C)_UP NA k__Bacteria|p__Spirochaetota|c__Spirochaetia|o__Spirochaetales|f__Treponemataceae|g__Treponema k__Bacteria|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Faecalibacterium k__Bacteria|p__Bacillota|c__Negativicutes|o__Acidaminococcales|f__Acidaminococcaceae|g__Phascolarctobacterium k__Bacteria|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Roseburia -bsdb:1048/136/2_Microbiome:Unspiked-pig-feces(P2)-at-64-hours-(5°C)_vs_Unspiked-pig-feces(P2)-at-64-hours-(-20°C)_DOWN NA k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella -bsdb:1048/137/1_Microbiome:Unspiked-pig-feces(P2)-at-16-hours-(22°C)_vs_Unspiked-pig-feces(P2)-at-64-hours-(-20°C)_UP NA k__Bacteria|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Faecalibacterium k__Bacteria|p__Spirochaetota|c__Spirochaetia|o__Spirochaetales|f__Treponemataceae|g__Treponema k__Bacteria|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Roseburia k__Bacteria|p__Bacillota|c__Negativicutes|o__Acidaminococcales|f__Acidaminococcaceae|g__Phascolarctobacterium -bsdb:1048/137/2_Microbiome:Unspiked-pig-feces(P2)-at-16-hours-(22°C)_vs_Unspiked-pig-feces(P2)-at-64-hours-(-20°C)_DOWN NA k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella -bsdb:1048/138/1_Microbiome:Unspiked-pig-feces(P2)-at-64-hours-(22°C)_vs_Unspiked-pig-feces(P2)-at-64-hours-(-20°C)_UP NA k__Bacteria|p__Spirochaetota|c__Spirochaetia|o__Spirochaetales|f__Treponemataceae|g__Treponema k__Bacteria|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Faecalibacterium k__Bacteria|p__Bacillota|c__Negativicutes|o__Acidaminococcales|f__Acidaminococcaceae|g__Phascolarctobacterium k__Bacteria|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Roseburia -bsdb:1048/138/2_Microbiome:Unspiked-pig-feces(P2)-at-64-hours-(22°C)_vs_Unspiked-pig-feces(P2)-at-64-hours-(-20°C)_DOWN NA k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella -bsdb:1048/139/1_Microbiome:Unspiked-pig-feces(P2)-at-64-hours-(5°C)_vs_Unspiked-pig-feces(P2)-at-16-hours-(5°C)_UP NA k__Bacteria|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Faecalibacterium k__Bacteria|p__Bacillota|c__Negativicutes|o__Acidaminococcales|f__Acidaminococcaceae|g__Phascolarctobacterium k__Bacteria|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Roseburia -bsdb:1048/139/2_Microbiome:Unspiked-pig-feces(P2)-at-64-hours-(5°C)_vs_Unspiked-pig-feces(P2)-at-16-hours-(5°C)_DOWN NA k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella k__Bacteria|p__Spirochaetota|c__Spirochaetia|o__Spirochaetales|f__Treponemataceae|g__Treponema -bsdb:1048/140/1_Microbiome:Unspiked-pig-feces(P2)-at-16-hours-(22°C)_vs_Unspiked-pig-feces(P2)-at-16-hours-(5°C)_UP NA k__Bacteria|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Faecalibacterium k__Bacteria|p__Bacillota|c__Negativicutes|o__Acidaminococcales|f__Acidaminococcaceae|g__Phascolarctobacterium k__Bacteria|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Roseburia -bsdb:1048/140/2_Microbiome:Unspiked-pig-feces(P2)-at-16-hours-(22°C)_vs_Unspiked-pig-feces(P2)-at-16-hours-(5°C)_DOWN NA k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella k__Bacteria|p__Spirochaetota|c__Spirochaetia|o__Spirochaetales|f__Treponemataceae|g__Treponema -bsdb:1048/141/1_Microbiome:Unspiked-pig-feces(P2)-at-64-hours-(22°C)_vs_Unspiked-pig-feces(P2)-at-16-hours-(5°C)_UP NA k__Bacteria|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Faecalibacterium k__Bacteria|p__Bacillota|c__Negativicutes|o__Acidaminococcales|f__Acidaminococcaceae|g__Phascolarctobacterium k__Bacteria|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Roseburia -bsdb:1048/141/2_Microbiome:Unspiked-pig-feces(P2)-at-64-hours-(22°C)_vs_Unspiked-pig-feces(P2)-at-16-hours-(5°C)_DOWN NA k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella k__Bacteria|p__Spirochaetota|c__Spirochaetia|o__Spirochaetales|f__Treponemataceae|g__Treponema -bsdb:1048/142/1_Microbiome:Unspiked-pig-feces(P2)-at-16-hours-(22°C)_vs_Unspiked-pig-feces(P2)-at-64-hours-(5°C)_UP NA k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella k__Bacteria|p__Spirochaetota|c__Spirochaetia|o__Spirochaetales|f__Treponemataceae|g__Treponema -bsdb:1048/142/2_Microbiome:Unspiked-pig-feces(P2)-at-16-hours-(22°C)_vs_Unspiked-pig-feces(P2)-at-64-hours-(5°C)_DOWN NA k__Bacteria|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Faecalibacterium k__Bacteria|p__Bacillota|c__Negativicutes|o__Acidaminococcales|f__Acidaminococcaceae|g__Phascolarctobacterium k__Bacteria|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Roseburia -bsdb:1048/143/1_Microbiome:Unspiked-pig-feces(P2)-at-64-hours-(22°C)_vs_Unspiked-pig-feces(P2)-at-64-hours-(5°C)_UP NA k__Bacteria|p__Spirochaetota|c__Spirochaetia|o__Spirochaetales|f__Treponemataceae|g__Treponema k__Bacteria|p__Bacillota|c__Negativicutes|o__Acidaminococcales|f__Acidaminococcaceae|g__Phascolarctobacterium -bsdb:1048/143/2_Microbiome:Unspiked-pig-feces(P2)-at-64-hours-(22°C)_vs_Unspiked-pig-feces(P2)-at-64-hours-(5°C)_DOWN NA k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella k__Bacteria|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Faecalibacterium k__Bacteria|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Roseburia -bsdb:1048/144/1_Microbiome:Unspiked-pig-feces(P2)-at-64-hours-(22°C)_vs_Unspiked-pig-feces(P2)-at-16-hours-(22°C)_UP NA k__Bacteria|p__Spirochaetota|c__Spirochaetia|o__Spirochaetales|f__Treponemataceae|g__Treponema k__Bacteria|p__Bacillota|c__Negativicutes|o__Acidaminococcales|f__Acidaminococcaceae|g__Phascolarctobacterium k__Bacteria|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Roseburia -bsdb:1048/144/2_Microbiome:Unspiked-pig-feces(P2)-at-64-hours-(22°C)_vs_Unspiked-pig-feces(P2)-at-16-hours-(22°C)_DOWN NA k__Bacteria|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Faecalibacterium k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella -bsdb:1048/145/1_Microbiome:Unspiked-sewage-samples-(S1)-at-16-hours-(-80°C)_vs_Unspiked-sewage-samples-(S1)-at-0-hours_UP NA k__Bacteria|p__Campylobacterota|c__Epsilonproteobacteria|o__Campylobacterales|f__Arcobacteraceae|g__Arcobacter k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella k__Bacteria|p__Pseudomonadota|c__Gammaproteobacteria|o__Aeromonadales|f__Aeromonadaceae|g__Aeromonas -bsdb:1048/145/2_Microbiome:Unspiked-sewage-samples-(S1)-at-16-hours-(-80°C)_vs_Unspiked-sewage-samples-(S1)-at-0-hours_DOWN NA k__Bacteria|p__Pseudomonadota|c__Gammaproteobacteria|o__Moraxellales|f__Moraxellaceae|g__Acinetobacter k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Tannerellaceae|g__Parabacteroides -bsdb:1048/146/1_Microbiome:Unspiked-sewage-samples-(S1)-at-64-hours-(-80°C)_vs_Unspiked-sewage-samples-(S1)-at-0-hours_UP NA k__Bacteria|p__Campylobacterota|c__Epsilonproteobacteria|o__Campylobacterales|f__Arcobacteraceae|g__Arcobacter k__Bacteria|p__Pseudomonadota|c__Gammaproteobacteria|o__Aeromonadales|f__Aeromonadaceae|g__Aeromonas -bsdb:1048/146/2_Microbiome:Unspiked-sewage-samples-(S1)-at-64-hours-(-80°C)_vs_Unspiked-sewage-samples-(S1)-at-0-hours_DOWN NA k__Bacteria|p__Pseudomonadota|c__Gammaproteobacteria|o__Moraxellales|f__Moraxellaceae|g__Acinetobacter k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Tannerellaceae|g__Parabacteroides k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella -bsdb:1048/147/1_Microbiome:Unspiked-sewage-samples-(S1)-at-16-hours-(-20°C)_vs_Unspiked-sewage-samples-(S1)-at-0-hours_UP NA k__Bacteria|p__Campylobacterota|c__Epsilonproteobacteria|o__Campylobacterales|f__Arcobacteraceae|g__Arcobacter k__Bacteria|p__Pseudomonadota|c__Gammaproteobacteria|o__Aeromonadales|f__Aeromonadaceae|g__Aeromonas -bsdb:1048/147/2_Microbiome:Unspiked-sewage-samples-(S1)-at-16-hours-(-20°C)_vs_Unspiked-sewage-samples-(S1)-at-0-hours_DOWN NA k__Bacteria|p__Pseudomonadota|c__Gammaproteobacteria|o__Moraxellales|f__Moraxellaceae|g__Acinetobacter k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Tannerellaceae|g__Parabacteroides k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella -bsdb:1048/148/1_Microbiome:Unspiked-sewage-samples-(S1)-at-64-hours-(-20°C)_vs_Unspiked-sewage-samples-(S1)-at-0-hours_UP NA k__Bacteria|p__Campylobacterota|c__Epsilonproteobacteria|o__Campylobacterales|f__Arcobacteraceae|g__Arcobacter k__Bacteria|p__Pseudomonadota|c__Gammaproteobacteria|o__Aeromonadales|f__Aeromonadaceae|g__Aeromonas k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella -bsdb:1048/148/2_Microbiome:Unspiked-sewage-samples-(S1)-at-64-hours-(-20°C)_vs_Unspiked-sewage-samples-(S1)-at-0-hours_DOWN NA k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Tannerellaceae|g__Parabacteroides k__Bacteria|p__Pseudomonadota|c__Gammaproteobacteria|o__Moraxellales|f__Moraxellaceae|g__Acinetobacter -bsdb:1048/149/1_Microbiome:Unspiked-sewage-samples-(S1)-at-16-hours-(5°C)_vs_Unspiked-sewage-samples-(S1)-at-0-hours_UP NA k__Bacteria|p__Campylobacterota|c__Epsilonproteobacteria|o__Campylobacterales|f__Arcobacteraceae|g__Arcobacter k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella k__Bacteria|p__Pseudomonadota|c__Gammaproteobacteria|o__Aeromonadales|f__Aeromonadaceae|g__Aeromonas -bsdb:1048/149/2_Microbiome:Unspiked-sewage-samples-(S1)-at-16-hours-(5°C)_vs_Unspiked-sewage-samples-(S1)-at-0-hours_DOWN NA k__Bacteria|p__Pseudomonadota|c__Gammaproteobacteria|o__Moraxellales|f__Moraxellaceae|g__Acinetobacter k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Tannerellaceae|g__Parabacteroides -bsdb:1048/150/1_Microbiome:Unspiked-sewage-samples-(S1)-at-64-hours-(5°C)_vs_Unspiked-sewage-samples-(S1)-at-0-hours_UP NA k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Tannerellaceae|g__Parabacteroides k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella k__Bacteria|p__Pseudomonadota|c__Gammaproteobacteria|o__Aeromonadales|f__Aeromonadaceae|g__Aeromonas -bsdb:1048/150/2_Microbiome:Unspiked-sewage-samples-(S1)-at-64-hours-(5°C)_vs_Unspiked-sewage-samples-(S1)-at-0-hours_DOWN NA k__Bacteria|p__Campylobacterota|c__Epsilonproteobacteria|o__Campylobacterales|f__Arcobacteraceae|g__Arcobacter k__Bacteria|p__Pseudomonadota|c__Gammaproteobacteria|o__Moraxellales|f__Moraxellaceae|g__Acinetobacter -bsdb:1048/151/1_Microbiome:Unspiked-sewage-samples-(S1)-at-16-hours-(22°C)_vs_Unspiked-sewage-samples-(S1)-at-0-hours_UP NA k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Tannerellaceae|g__Parabacteroides k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella k__Bacteria|p__Pseudomonadota|c__Gammaproteobacteria|o__Aeromonadales|f__Aeromonadaceae|g__Aeromonas -bsdb:1048/151/2_Microbiome:Unspiked-sewage-samples-(S1)-at-16-hours-(22°C)_vs_Unspiked-sewage-samples-(S1)-at-0-hours_DOWN NA k__Bacteria|p__Campylobacterota|c__Epsilonproteobacteria|o__Campylobacterales|f__Arcobacteraceae|g__Arcobacter k__Bacteria|p__Pseudomonadota|c__Gammaproteobacteria|o__Moraxellales|f__Moraxellaceae|g__Acinetobacter -bsdb:1048/152/1_Microbiome:Unspiked-sewage-samples-(S1)-at-64-hours-(22°C)_vs_Unspiked-sewage-samples-(S1)-at-0-hours_UP NA k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella k__Bacteria|p__Pseudomonadota|c__Gammaproteobacteria|o__Aeromonadales|f__Aeromonadaceae|g__Aeromonas -bsdb:1048/152/2_Microbiome:Unspiked-sewage-samples-(S1)-at-64-hours-(22°C)_vs_Unspiked-sewage-samples-(S1)-at-0-hours_DOWN NA k__Bacteria|p__Campylobacterota|c__Epsilonproteobacteria|o__Campylobacterales|f__Arcobacteraceae|g__Arcobacter k__Bacteria|p__Pseudomonadota|c__Gammaproteobacteria|o__Moraxellales|f__Moraxellaceae|g__Acinetobacter k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Tannerellaceae|g__Parabacteroides -bsdb:1048/153/1_Microbiome:Unspiked-sewage-samples-(S1)-at-64-hours-(-80°C)_vs_Unspiked-sewage-samples-(S1)-at-16-hours-(-80°C)_UP NA k__Bacteria|p__Pseudomonadota|c__Gammaproteobacteria|o__Aeromonadales|f__Aeromonadaceae|g__Aeromonas -bsdb:1048/153/2_Microbiome:Unspiked-sewage-samples-(S1)-at-64-hours-(-80°C)_vs_Unspiked-sewage-samples-(S1)-at-16-hours-(-80°C)_DOWN NA k__Bacteria|p__Campylobacterota|c__Epsilonproteobacteria|o__Campylobacterales|f__Arcobacteraceae|g__Arcobacter k__Bacteria|p__Pseudomonadota|c__Gammaproteobacteria|o__Moraxellales|f__Moraxellaceae|g__Acinetobacter k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Tannerellaceae|g__Parabacteroides k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella -bsdb:1048/154/1_Microbiome:Unspiked-sewage-samples-(S1)-at-16-hours-(-20°C)_vs_Unspiked-sewage-samples-(S1)-at-16-hours-(-80°C)_UP NA k__Bacteria|p__Pseudomonadota|c__Gammaproteobacteria|o__Moraxellales|f__Moraxellaceae|g__Acinetobacter -bsdb:1048/154/2_Microbiome:Unspiked-sewage-samples-(S1)-at-16-hours-(-20°C)_vs_Unspiked-sewage-samples-(S1)-at-16-hours-(-80°C)_DOWN NA k__Bacteria|p__Campylobacterota|c__Epsilonproteobacteria|o__Campylobacterales|f__Arcobacteraceae|g__Arcobacter k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Tannerellaceae|g__Parabacteroides k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella k__Bacteria|p__Pseudomonadota|c__Gammaproteobacteria|o__Aeromonadales|f__Aeromonadaceae|g__Aeromonas -bsdb:1048/155/1_Microbiome:Unspiked-sewage-samples-(S1)-at-64-hours-(-20°C)_vs_Unspiked-sewage-samples-(S1)-at-16-hours-(-80°C)_UP NA k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella -bsdb:1048/155/2_Microbiome:Unspiked-sewage-samples-(S1)-at-64-hours-(-20°C)_vs_Unspiked-sewage-samples-(S1)-at-16-hours-(-80°C)_DOWN NA k__Bacteria|p__Campylobacterota|c__Epsilonproteobacteria|o__Campylobacterales|f__Arcobacteraceae|g__Arcobacter k__Bacteria|p__Pseudomonadota|c__Gammaproteobacteria|o__Moraxellales|f__Moraxellaceae|g__Acinetobacter k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Tannerellaceae|g__Parabacteroides k__Bacteria|p__Pseudomonadota|c__Gammaproteobacteria|o__Aeromonadales|f__Aeromonadaceae|g__Aeromonas -bsdb:1048/156/1_Microbiome:Unspiked-sewage-samples-(S1)-at-16-hours-(5°C)_vs_Unspiked-sewage-samples-(S1)-at-16-hours-(-80°C)_UP NA k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Tannerellaceae|g__Parabacteroides k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella -bsdb:1048/156/2_Microbiome:Unspiked-sewage-samples-(S1)-at-16-hours-(5°C)_vs_Unspiked-sewage-samples-(S1)-at-16-hours-(-80°C)_DOWN NA k__Bacteria|p__Campylobacterota|c__Epsilonproteobacteria|o__Campylobacterales|f__Arcobacteraceae|g__Arcobacter k__Bacteria|p__Pseudomonadota|c__Gammaproteobacteria|o__Moraxellales|f__Moraxellaceae|g__Acinetobacter k__Bacteria|p__Pseudomonadota|c__Gammaproteobacteria|o__Aeromonadales|f__Aeromonadaceae|g__Aeromonas -bsdb:1048/157/1_Microbiome:Unspiked-sewage-samples-(S1)-at-64-hours-(5°C)_vs_Unspiked-sewage-samples-(S1)-at-16-hours-(-80°C)_UP NA k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Tannerellaceae|g__Parabacteroides -bsdb:1048/157/2_Microbiome:Unspiked-sewage-samples-(S1)-at-64-hours-(5°C)_vs_Unspiked-sewage-samples-(S1)-at-16-hours-(-80°C)_DOWN NA k__Bacteria|p__Campylobacterota|c__Epsilonproteobacteria|o__Campylobacterales|f__Arcobacteraceae|g__Arcobacter k__Bacteria|p__Pseudomonadota|c__Gammaproteobacteria|o__Moraxellales|f__Moraxellaceae|g__Acinetobacter k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella k__Bacteria|p__Pseudomonadota|c__Gammaproteobacteria|o__Aeromonadales|f__Aeromonadaceae|g__Aeromonas -bsdb:1048/158/1_Microbiome:Unspiked-sewage-samples-(S1)-at-16-hours-(22°C)_vs_Unspiked-sewage-samples-(S1)-at-16-hours-(-80°C)_UP NA k__Bacteria|p__Pseudomonadota|c__Gammaproteobacteria|o__Moraxellales|f__Moraxellaceae|g__Acinetobacter k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Tannerellaceae|g__Parabacteroides k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella -bsdb:1048/158/2_Microbiome:Unspiked-sewage-samples-(S1)-at-16-hours-(22°C)_vs_Unspiked-sewage-samples-(S1)-at-16-hours-(-80°C)_DOWN NA k__Bacteria|p__Campylobacterota|c__Epsilonproteobacteria|o__Campylobacterales|f__Arcobacteraceae|g__Arcobacter k__Bacteria|p__Pseudomonadota|c__Gammaproteobacteria|o__Aeromonadales|f__Aeromonadaceae|g__Aeromonas -bsdb:1048/159/1_Microbiome:Unspiked-sewage-samples-(S1)-at-64-hours-(22°C)_vs_Unspiked-sewage-samples-(S1)-at-16-hours-(-80°C)_UP NA k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella k__Bacteria|p__Pseudomonadota|c__Gammaproteobacteria|o__Aeromonadales|f__Aeromonadaceae|g__Aeromonas -bsdb:1048/159/2_Microbiome:Unspiked-sewage-samples-(S1)-at-64-hours-(22°C)_vs_Unspiked-sewage-samples-(S1)-at-16-hours-(-80°C)_DOWN NA k__Bacteria|p__Campylobacterota|c__Epsilonproteobacteria|o__Campylobacterales|f__Arcobacteraceae|g__Arcobacter k__Bacteria|p__Pseudomonadota|c__Gammaproteobacteria|o__Moraxellales|f__Moraxellaceae|g__Acinetobacter k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Tannerellaceae|g__Parabacteroides -bsdb:1048/160/1_Microbiome:Unspiked-sewage-samples-(S1)-at-16-hours-(-20°C)_vs_Unspiked-sewage-samples-(S1)-at-64-hours-(-80°C)_UP NA k__Bacteria|p__Campylobacterota|c__Epsilonproteobacteria|o__Campylobacterales|f__Arcobacteraceae|g__Arcobacter k__Bacteria|p__Pseudomonadota|c__Gammaproteobacteria|o__Moraxellales|f__Moraxellaceae|g__Acinetobacter k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Tannerellaceae|g__Parabacteroides k__Bacteria|p__Pseudomonadota|c__Gammaproteobacteria|o__Aeromonadales|f__Aeromonadaceae|g__Aeromonas -bsdb:1048/160/2_Microbiome:Unspiked-sewage-samples-(S1)-at-16-hours-(-20°C)_vs_Unspiked-sewage-samples-(S1)-at-64-hours-(-80°C)_DOWN NA k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella -bsdb:1048/161/1_Microbiome:Unspiked-sewage-samples-(S1)-at-64-hours-(-20°C)_vs_Unspiked-sewage-samples-(S1)-at-64-hours-(-80°C)_UP NA k__Bacteria|p__Campylobacterota|c__Epsilonproteobacteria|o__Campylobacterales|f__Arcobacteraceae|g__Arcobacter k__Bacteria|p__Pseudomonadota|c__Gammaproteobacteria|o__Moraxellales|f__Moraxellaceae|g__Acinetobacter k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Tannerellaceae|g__Parabacteroides k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella -bsdb:1048/161/2_Microbiome:Unspiked-sewage-samples-(S1)-at-64-hours-(-20°C)_vs_Unspiked-sewage-samples-(S1)-at-64-hours-(-80°C)_DOWN NA k__Bacteria|p__Pseudomonadota|c__Gammaproteobacteria|o__Aeromonadales|f__Aeromonadaceae|g__Aeromonas -bsdb:1048/162/1_Microbiome:Unspiked-sewage-samples-(S1)-at-16-hours-(5°C)_vs_Unspiked-sewage-samples-(S1)-at-64-hours-(-80°C)_UP NA k__Bacteria|p__Campylobacterota|c__Epsilonproteobacteria|o__Campylobacterales|f__Arcobacteraceae|g__Arcobacter k__Bacteria|p__Pseudomonadota|c__Gammaproteobacteria|o__Moraxellales|f__Moraxellaceae|g__Acinetobacter k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Tannerellaceae|g__Parabacteroides k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella -bsdb:1048/162/2_Microbiome:Unspiked-sewage-samples-(S1)-at-16-hours-(5°C)_vs_Unspiked-sewage-samples-(S1)-at-64-hours-(-80°C)_DOWN NA k__Bacteria|p__Pseudomonadota|c__Gammaproteobacteria|o__Aeromonadales|f__Aeromonadaceae|g__Aeromonas -bsdb:1048/207/1_Microbiome:Unspiked-sewage-samples-(S2)-at-16-hours-(5°C)_vs_Unspiked-sewage-samples-(S2)-at-64-hours-(-20°C)_UP NA k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Tannerellaceae|g__Parabacteroides -bsdb:1048/207/2_Microbiome:Unspiked-sewage-samples-(S2)-at-16-hours-(5°C)_vs_Unspiked-sewage-samples-(S2)-at-64-hours-(-20°C)_DOWN NA k__Bacteria|p__Campylobacterota|c__Epsilonproteobacteria|o__Campylobacterales|f__Arcobacteraceae|g__Arcobacter k__Bacteria|p__Pseudomonadota|c__Gammaproteobacteria|o__Moraxellales|f__Moraxellaceae|g__Acinetobacter k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella k__Bacteria|p__Pseudomonadota|c__Gammaproteobacteria|o__Aeromonadales|f__Aeromonadaceae|g__Aeromonas bsdb:1049/1/2_Atopic-eczema:cADtreat-dogs_vs_Healthy-dogs_DOWN NA k__Bacteria|k__Bacillati|p__Actinomycetota|c__Actinomycetes|o__Micrococcales|f__Micrococcaceae|g__Arthrobacter k__Bacteria|k__Bacillati|p__Actinomycetota|c__Actinomycetes|o__Mycobacteriales|f__Corynebacteriaceae|g__Corynebacterium bsdb:1049/2/1_Atopic-eczema:cADpost-dogs_vs_cADpre-dogs_DOWN NA k__Bacteria|k__Bacillati|p__Actinomycetota|c__Actinomycetes|o__Micrococcales|f__Micrococcaceae|g__Arthrobacter k__Bacteria|k__Bacillati|p__Bacillota|c__Bacilli|o__Bacillales|f__Bacillaceae|g__Bacillus k__Bacteria|k__Thermotogati|p__Deinococcota|c__Deinococci|o__Deinococcales|f__Deinococcaceae|g__Deinococcus k__Bacteria|k__Pseudomonadati|p__Pseudomonadota|c__Gammaproteobacteria|o__Pseudomonadales|f__Pseudomonadaceae|g__Pseudomonas k__Bacteria|k__Pseudomonadati|p__Pseudomonadota|c__Alphaproteobacteria|o__Rhodospirillales|f__Azospirillaceae|g__Skermanella bsdb:1049/2/2_Atopic-eczema:cADpost-dogs_vs_cADpre-dogs_UP NA k__Bacteria|k__Bacillati|p__Actinomycetota|c__Actinomycetes|o__Mycobacteriales|f__Corynebacteriaceae|g__Corynebacterium k__Bacteria|k__Bacillati|p__Actinomycetota|c__Actinomycetes|o__Propionibacteriales|f__Propionibacteriaceae|g__Cutibacterium k__Bacteria|k__Pseudomonadati|p__Pseudomonadota|c__Alphaproteobacteria|o__Hyphomicrobiales|f__Methylobacteriaceae|g__Methylobacterium k__Bacteria|k__Bacillati|p__Actinomycetota|c__Actinomycetes|o__Propionibacteriales|f__Nocardioidaceae|g__Nocardioides k__Bacteria|k__Pseudomonadati|p__Pseudomonadota|c__Alphaproteobacteria|o__Rhodobacterales|f__Paracoccaceae|g__Paracoccus k__Bacteria|k__Pseudomonadati|p__Pseudomonadota|c__Alphaproteobacteria|o__Acetobacterales|f__Roseomonadaceae|g__Roseomonas k__Bacteria|k__Pseudomonadati|p__Pseudomonadota|c__Alphaproteobacteria|o__Rhodobacterales|f__Roseobacteraceae|g__Rubellimicrobium k__Bacteria|k__Pseudomonadati|p__Pseudomonadota|c__Alphaproteobacteria|o__Sphingomonadales|f__Sphingomonadaceae|g__Sphingomonas k__Bacteria|k__Bacillati|p__Bacillota|c__Bacilli|o__Bacillales|f__Staphylococcaceae|g__Staphylococcus k__Bacteria|k__Bacillati|p__Bacillota|c__Bacilli|o__Lactobacillales|f__Streptococcaceae|g__Streptococcus @@ -4302,26 +4146,6 @@ bsdb:1049/41/2_Atopic-eczema:cADpost-dogs_vs_cADpre-dogs_UP NA k__Bacteria|k__Ps bsdb:1049/43/1_Atopic-eczema:cADpre-dogs_vs_Healthy-dogs_UP NA k__Bacteria|k__Bacillati|p__Bacillota|c__Bacilli|o__Bacillales|f__Staphylococcaceae|g__Staphylococcus bsdb:1049/44/1_Atopic-eczema:cADtreat-dogs_vs_Healthy-dogs_DOWN NA k__Bacteria|k__Pseudomonadati|p__Pseudomonadota|c__Gammaproteobacteria|o__Moraxellales|f__Moraxellaceae|g__Moraxella bsdb:1049/44/2_Atopic-eczema:cADtreat-dogs_vs_Healthy-dogs_UP NA k__Bacteria|k__Pseudomonadati|p__Pseudomonadota|c__Betaproteobacteria|o__Burkholderiales|f__Burkholderiaceae|g__Lautropia -bsdb:1049/47/1_Atopic-eczema:cADpre-dogs_vs_Healthy-dogs_UP NA k__Bacteria|k__Bacillati|p__Bacillota|c__Bacilli|o__Bacillales|f__Staphylococcaceae|g__Staphylococcus -bsdb:1049/48/1_Atopic-eczema:cADpost-dogs_vs_cADpre-dogs_DOWN NA k__Bacteria|k__Bacillati|p__Bacillota|c__Bacilli|o__Bacillales|f__Staphylococcaceae|g__Staphylococcus -bsdb:1049/49/1_Atopic-eczema:cADpre-dogs_vs_Healthy-dogs_UP NA k__Bacteria|k__Bacillati|p__Bacillota|c__Bacilli|o__Bacillales|f__Staphylococcaceae|g__Staphylococcus -bsdb:1049/50/1_Atopic-eczema:cADpre-dogs_vs_Healthy-dogs_UP NA k__Bacteria|k__Bacillati|p__Bacillota|c__Bacilli|o__Bacillales|f__Staphylococcaceae|g__Staphylococcus -bsdb:1049/51/1_Atopic-eczema:cADpost-dogs_vs_cADpre-dogs_DOWN NA k__Bacteria|k__Bacillati|p__Bacillota|c__Bacilli|o__Bacillales|f__Staphylococcaceae|g__Staphylococcus -bsdb:1049/52/1_Atopic-eczema:cADtreat-dogs_vs_cADpre-dogs_DOWN NA k__Bacteria|k__Bacillati|p__Bacillota|c__Bacilli|o__Bacillales|f__Staphylococcaceae|g__Staphylococcus -bsdb:1049/53/1_Atopic-eczema:cADpre-dogs_vs_Healthy-dogs_UP NA k__Bacteria|k__Bacillati|p__Bacillota|c__Bacilli|o__Bacillales|f__Staphylococcaceae|g__Staphylococcus -bsdb:1049/54/1_Atopic-eczema:cADpre-dogs_vs_Healthy-dogs_UP NA k__Bacteria|k__Bacillati|p__Bacillota|c__Bacilli|o__Bacillales|f__Staphylococcaceae|g__Staphylococcus -bsdb:1049/55/1_Atopic-eczema:cADpost-dogs_vs_cADpre-dogs_DOWN NA k__Bacteria|k__Bacillati|p__Bacillota|c__Bacilli|o__Bacillales|f__Staphylococcaceae|g__Staphylococcus -bsdb:1049/56/1_Atopic-eczema:cADtreat-dogs_vs_cADpre-dogs_DOWN NA k__Bacteria|k__Bacillati|p__Bacillota|c__Bacilli|o__Bacillales|f__Staphylococcaceae|g__Staphylococcus -bsdb:1049/57/1_Atopic-eczema:cADpre-dogs_vs_Healthy-dogs_UP NA k__Bacteria|k__Bacillati|p__Bacillota|c__Bacilli|o__Bacillales|f__Staphylococcaceae|g__Staphylococcus -bsdb:1049/58/1_Atopic-eczema:cADpost-dogs_vs_cADpre-dogs_DOWN NA k__Bacteria|k__Bacillati|p__Bacillota|c__Bacilli|o__Bacillales|f__Staphylococcaceae|g__Staphylococcus -bsdb:1049/59/1_Atopic-eczema:Mitochondrial-haplogroups-C_vs_Mitochondrial-haplogroups-A_DOWN NA k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Anaerostipes k__Bacteria|k__Bacillati|p__Bacillota|c__Bacilli|o__Lactobacillales|f__Streptococcaceae|g__Streptococcus k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Anaerotignaceae|g__Anaerotignum k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Blautia k__Bacteria|k__Bacillati|p__Bacillota|c__Erysipelotrichia|o__Erysipelotrichales|f__Erysipelotrichaceae|g__Amedibacterium -bsdb:1049/60/1_Atopic-eczema:Mitochondrial-haplogroups-C_vs_Mitochondrial-haplogroups-A_DOWN NA k__Bacteria|k__Bacillati|p__Actinomycetota|c__Actinomycetes|o__Micrococcales|f__Micrococcaceae|g__Arthrobacter k__Bacteria|k__Pseudomonadati|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Bacteroidaceae|g__Bacteroides -bsdb:1049/61/2_Atopic-eczema:Mitochondrial-haplogroups-C_vs_Mitochondrial-haplogroups-A_DOWN NA k__Bacteria|k__Pseudomonadati|p__Pseudomonadota|c__Alphaproteobacteria|o__Rhodobacterales|f__Roseobacteraceae|g__Rubellimicrobium k__Bacteria|k__Pseudomonadati|p__Pseudomonadota|c__Gammaproteobacteria|o__Pasteurellales|f__Pasteurellaceae|g__Haemophilus -bsdb:1049/62/1_Atopic-eczema:Mitochondrial-haplogroups-C_vs_Mitochondrial-haplogroups-A_UP NA k__Bacteria|k__Bacillati|p__Actinomycetota|c__Actinomycetes|o__Micrococcales|f__Micrococcaceae|g__Rothia k__Bacteria|k__Pseudomonadati|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Tannerellaceae|g__Tannerella k__Bacteria|k__Pseudomonadati|p__Pseudomonadota|c__Gammaproteobacteria|o__Lysobacterales|f__Lysobacteraceae|g__Stenotrophomonas -bsdb:1049/62/2_Atopic-eczema:Mitochondrial-haplogroups-C_vs_Mitochondrial-haplogroups-A_DOWN NA k__Bacteria|k__Pseudomonadati|p__Bacteroidota|c__Flavobacteriia|o__Flavobacteriales|f__Flavobacteriaceae|g__Flavobacterium k__Bacteria|k__Pseudomonadati|p__Pseudomonadota|c__Gammaproteobacteria|o__Pasteurellales|f__Pasteurellaceae|g__Pasteurella -bsdb:1049/63/1_Atopic-eczema:Mitochondrial-haplogroups-C_vs_Mitochondrial-haplogroups-A_DOWN NA k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Roseburia -bsdb:1049/64/1_Atopic-eczema:Mitochondrial-haplogroups-C_vs_Mitochondrial-haplogroups-A_UP NA k__Bacteria|k__Pseudomonadati|p__Pseudomonadota|c__Gammaproteobacteria|o__Pasteurellales|f__Pasteurellaceae|g__Haemophilus -bsdb:1049/64/2_Atopic-eczema:Mitochondrial-haplogroups-C_vs_Mitochondrial-haplogroups-A_DOWN NA k__Bacteria|k__Pseudomonadati|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Bacteroidaceae|g__Bacteroides k__Bacteria|k__Pseudomonadati|p__Bacteroidota|c__Flavobacteriia|o__Flavobacteriales|f__Flavobacteriaceae|g__Capnocytophaga k__Bacteria|k__Pseudomonadati|p__Pseudomonadota|c__Betaproteobacteria|o__Neisseriales|f__Neisseriaceae|g__Neisseria bsdb:1050/1/1_Taxonomic-microbiome-measurement:Esophagus_vs_Oral-cavity_UP NA k__Bacteria|p__Pseudomonadota|c__Gammaproteobacteria|o__Moraxellales|f__Moraxellaceae|g__Acinetobacter k__Bacteria|p__Pseudomonadota|c__Gammaproteobacteria|o__Pasteurellales|f__Pasteurellaceae|g__Actinobacillus k__Bacteria|p__Bacillota|c__Erysipelotrichia|o__Erysipelotrichales|f__Erysipelotrichaceae|g__Allobaculum k__Bacteria|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Blautia k__Bacteria|p__Pseudomonadota|c__Alphaproteobacteria|o__Hyphomicrobiales|f__Nitrobacteraceae|g__Bradyrhizobium k__Bacteria|p__Bacteroidota|c__Flavobacteriia|o__Flavobacteriales|f__Weeksellaceae|g__Chryseobacterium k__Bacteria|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Coprococcus k__Bacteria|p__Pseudomonadota|c__Alphaproteobacteria|o__Hyphomicrobiales|g__Enhydrobacter k__Bacteria|p__Pseudomonadota|c__Alphaproteobacteria|o__Hyphomicrobiales|f__Methylobacteriaceae|g__Methylobacterium k__Bacteria|p__Pseudomonadota|c__Alphaproteobacteria|o__Sphingomonadales|f__Sphingomonadaceae|g__Novosphingobium k__Bacteria|p__Pseudomonadota|c__Alphaproteobacteria|o__Hyphomicrobiales|f__Brucellaceae|g__Ochrobactrum k__Bacteria|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Oscillospira k__Bacteria|p__Pseudomonadota|c__Alphaproteobacteria|o__Caulobacterales|f__Caulobacteraceae|g__Phenylobacterium k__Bacteria|p__Actinomycetota|c__Actinomycetes|o__Propionibacteriales|f__Propionibacteriaceae|g__Propionibacterium k__Bacteria|p__Pseudomonadota|c__Gammaproteobacteria|o__Pseudomonadales|f__Pseudomonadaceae|g__Pseudomonas k__Bacteria|p__Pseudomonadota|c__Betaproteobacteria|o__Burkholderiales|f__Burkholderiaceae|g__Ralstonia k__Bacteria|p__Bacteroidota|c__Saprospiria|o__Saprospirales|f__Saprospiraceae|g__Saprospira k__Bacteria|p__Bacteroidota|c__Chitinophagia|o__Chitinophagales|f__Chitinophagaceae|g__Sediminibacterium k__Bacteria|p__Pseudomonadota|c__Alphaproteobacteria|o__Sphingomonadales|f__Sphingomonadaceae|g__Sphingobium k__Bacteria|p__Pseudomonadota|c__Alphaproteobacteria|o__Sphingomonadales|f__Sphingomonadaceae|g__Sphingomonas k__Bacteria|p__Bacillota|c__Bacilli|o__Bacillales|f__Staphylococcaceae|g__Staphylococcus k__Bacteria|p__Pseudomonadota|c__Gammaproteobacteria|o__Lysobacterales|f__Lysobacteraceae|g__Stenotrophomonas k__Bacteria|p__Bacillota|c__Bacilli|o__Lactobacillales|f__Streptococcaceae|g__Streptococcus bsdb:1050/1/2_Taxonomic-microbiome-measurement:Esophagus_vs_Oral-cavity_DOWN NA k__Bacteria|p__Actinomycetota|c__Actinomycetes|o__Actinomycetales|f__Actinomycetaceae|g__Actinomyces k__Bacteria|p__Pseudomonadota|c__Gammaproteobacteria|o__Cardiobacteriales|f__Cardiobacteriaceae|g__Cardiobacterium k__Bacteria|p__Pseudomonadota|c__Betaproteobacteria|o__Neisseriales|f__Neisseriaceae|g__Neisseria k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Paludibacteraceae|g__Paludibacter k__Bacteria|p__Bacillota|c__Negativicutes|o__Selenomonadales|f__Selenomonadaceae|g__Selenomonas bsdb:1051/1/1_Lung-cancer:Lung-cancer-(L-group)_vs_Benign-pulmonary-diseases-(N-group)_UP NA k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Bacteroidaceae|g__Bacteroides diff --git a/bugsigdb_signatures_genus_metaphlan_exact.gmt b/bugsigdb_signatures_genus_metaphlan_exact.gmt index 976e1acd0..8b5ea8fe2 100644 --- a/bugsigdb_signatures_genus_metaphlan_exact.gmt +++ b/bugsigdb_signatures_genus_metaphlan_exact.gmt @@ -1,4 +1,4 @@ -# BugSigDB 2025-01-25_15:58_UTC, License: Creative Commons Attribution 4.0 International, URL: https://bugsigdb.org +# BugSigDB 2025-01-26_10:58_UTC, License: Creative Commons Attribution 4.0 International, URL: https://bugsigdb.org bsdb:1/1/1_Colorectal-adenoma:conventional-adenoma-cases_vs_controls_UP NA k__Bacteria|p__Actinomycetota|c__Actinomycetes|o__Actinomycetales|f__Actinomycetaceae|g__Actinomyces k__Bacteria|p__Actinomycetota|c__Actinomycetes|o__Mycobacteriales|f__Corynebacteriaceae|g__Corynebacterium k__Bacteria|p__Bacillota|c__Bacilli|o__Lactobacillales|f__Streptococcaceae|g__Streptococcus k__Bacteria|p__Bacillota|c__Tissierellia|o__Tissierellales|f__Peptoniphilaceae|g__Peptoniphilus k__Bacteria|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Dorea k__Bacteria|p__Bacillota|c__Negativicutes|o__Acidaminococcales|f__Acidaminococcaceae|g__Phascolarctobacterium k__Bacteria|p__Pseudomonadota|c__Betaproteobacteria|o__Burkholderiales|f__Sutterellaceae|g__Sutterella k__Bacteria|p__Bacillota|c__Bacilli|o__Bacillales|f__Bacillaceae|g__Bacillus bsdb:1/1/2_Colorectal-adenoma:conventional-adenoma-cases_vs_controls_DOWN NA k__Bacteria|p__Bacillota|c__Erysipelotrichia|o__Erysipelotrichales|f__Coprobacillaceae|g__Coprobacillus bsdb:1/2/1_Hyperplastic-Polyp:hyperplastic-polyp-cases_vs_controls_UP NA k__Bacteria|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Anaerostipes @@ -3419,162 +3419,6 @@ bsdb:1048/44/1_Microbiome:Unspiked-pig-feces(P1)-at-16-hours-(5°C)_vs_Unspiked- bsdb:1048/44/2_Microbiome:Unspiked-pig-feces(P1)-at-16-hours-(5°C)_vs_Unspiked-pig-feces(P1)-at-16-hours-(-80°C)_DOWN NA k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella k__Bacteria|p__Bacillota|c__Negativicutes|o__Acidaminococcales|f__Acidaminococcaceae|g__Phascolarctobacterium bsdb:1048/45/1_Microbiome:Unspiked-pig-feces(P1)-at-64-hours-(5°C)_vs_Unspiked-pig-feces(P1)-at-16-hours-(-80°C)_UP NA k__Bacteria|p__Spirochaetota|c__Spirochaetia|o__Spirochaetales|f__Treponemataceae|g__Treponema k__Bacteria|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Faecalibacterium k__Bacteria|p__Bacillota|c__Negativicutes|o__Acidaminococcales|f__Acidaminococcaceae|g__Phascolarctobacterium k__Bacteria|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Roseburia bsdb:1048/45/2_Microbiome:Unspiked-pig-feces(P1)-at-64-hours-(5°C)_vs_Unspiked-pig-feces(P1)-at-16-hours-(-80°C)_DOWN NA k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella -bsdb:1048/46/1_Microbiome:Unspiked-pig-feces(P1)-at-16-hours-(22°C)_vs_Unspiked-pig-feces(P1)-at-16-hours-(-80°C)_UP NA k__Bacteria|p__Spirochaetota|c__Spirochaetia|o__Spirochaetales|f__Treponemataceae|g__Treponema k__Bacteria|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Faecalibacterium k__Bacteria|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Roseburia -bsdb:1048/46/2_Microbiome:Unspiked-pig-feces(P1)-at-16-hours-(22°C)_vs_Unspiked-pig-feces(P1)-at-16-hours-(-80°C)_DOWN NA k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella k__Bacteria|p__Bacillota|c__Negativicutes|o__Acidaminococcales|f__Acidaminococcaceae|g__Phascolarctobacterium -bsdb:1048/47/1_Microbiome:Unspiked-pig-feces(P1)-at-64-hours-(22°C)_vs_Unspiked-pig-feces(P1)-at-16-hours-(-80°C)_UP NA k__Bacteria|p__Spirochaetota|c__Spirochaetia|o__Spirochaetales|f__Treponemataceae|g__Treponema k__Bacteria|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Faecalibacterium -bsdb:1048/47/2_Microbiome:Unspiked-pig-feces(P1)-at-64-hours-(22°C)_vs_Unspiked-pig-feces(P1)-at-16-hours-(-80°C)_DOWN NA k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella -bsdb:1048/48/1_Microbiome:Unspiked-pig-feces(P1)-at-16-hours-(-20°C)_vs_Unspiked-pig-feces(P1)-at-64-hours-(-80°C)_UP NA k__Bacteria|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Faecalibacterium k__Bacteria|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Roseburia -bsdb:1048/48/2_Microbiome:Unspiked-pig-feces(P1)-at-16-hours-(-20°C)_vs_Unspiked-pig-feces(P1)-at-64-hours-(-80°C)_DOWN NA k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella k__Bacteria|p__Spirochaetota|c__Spirochaetia|o__Spirochaetales|f__Treponemataceae|g__Treponema k__Bacteria|p__Bacillota|c__Negativicutes|o__Acidaminococcales|f__Acidaminococcaceae|g__Phascolarctobacterium -bsdb:1048/49/1_Microbiome:Unspiked-pig-feces(P1)-at-64-hours-(-20°C)_vs_Unspiked-pig-feces(P1)-at-64-hours-(-80°C)_UP NA k__Bacteria|p__Spirochaetota|c__Spirochaetia|o__Spirochaetales|f__Treponemataceae|g__Treponema k__Bacteria|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Faecalibacterium k__Bacteria|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Roseburia -bsdb:1048/49/2_Microbiome:Unspiked-pig-feces(P1)-at-64-hours-(-20°C)_vs_Unspiked-pig-feces(P1)-at-64-hours-(-80°C)_DOWN NA k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella k__Bacteria|p__Bacillota|c__Negativicutes|o__Acidaminococcales|f__Acidaminococcaceae|g__Phascolarctobacterium -bsdb:1048/50/1_Microbiome:Unspiked-pig-feces(P1)-at-16-hours-(5°C)_vs_Unspiked-pig-feces(P1)-at-64-hours-(-80°C)_UP NA k__Bacteria|p__Spirochaetota|c__Spirochaetia|o__Spirochaetales|f__Treponemataceae|g__Treponema k__Bacteria|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Faecalibacterium k__Bacteria|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Roseburia -bsdb:1048/50/2_Microbiome:Unspiked-pig-feces(P1)-at-16-hours-(5°C)_vs_Unspiked-pig-feces(P1)-at-64-hours-(-80°C)_DOWN NA k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella k__Bacteria|p__Bacillota|c__Negativicutes|o__Acidaminococcales|f__Acidaminococcaceae|g__Phascolarctobacterium -bsdb:1048/51/1_Microbiome:Unspiked-pig-feces(P1)-at-64-hours-(5°C)_vs_Unspiked-pig-feces(P1)-at-64-hours-(-80°C)_UP NA k__Bacteria|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Faecalibacterium k__Bacteria|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Roseburia -bsdb:1048/51/2_Microbiome:Unspiked-pig-feces(P1)-at-64-hours-(5°C)_vs_Unspiked-pig-feces(P1)-at-64-hours-(-80°C)_DOWN NA k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella k__Bacteria|p__Spirochaetota|c__Spirochaetia|o__Spirochaetales|f__Treponemataceae|g__Treponema k__Bacteria|p__Bacillota|c__Negativicutes|o__Acidaminococcales|f__Acidaminococcaceae|g__Phascolarctobacterium -bsdb:1048/52/1_Microbiome:Unspiked-pig-feces(P1)-at-16-hours-(22°C)_vs_Unspiked-pig-feces(P1)-at-64-hours-(-80°C)_UP NA k__Bacteria|p__Spirochaetota|c__Spirochaetia|o__Spirochaetales|f__Treponemataceae|g__Treponema k__Bacteria|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Faecalibacterium k__Bacteria|p__Bacillota|c__Negativicutes|o__Acidaminococcales|f__Acidaminococcaceae|g__Phascolarctobacterium k__Bacteria|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Roseburia -bsdb:1048/52/2_Microbiome:Unspiked-pig-feces(P1)-at-16-hours-(22°C)_vs_Unspiked-pig-feces(P1)-at-64-hours-(-80°C)_DOWN NA k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella -bsdb:1048/53/1_Microbiome:Unspiked-pig-feces(P1)-at-64-hours-(22°C)_vs_Unspiked-pig-feces(P1)-at-64-hours-(-80°C)_UP NA k__Bacteria|p__Spirochaetota|c__Spirochaetia|o__Spirochaetales|f__Treponemataceae|g__Treponema k__Bacteria|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Faecalibacterium k__Bacteria|p__Bacillota|c__Negativicutes|o__Acidaminococcales|f__Acidaminococcaceae|g__Phascolarctobacterium k__Bacteria|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Roseburia -bsdb:1048/53/2_Microbiome:Unspiked-pig-feces(P1)-at-64-hours-(22°C)_vs_Unspiked-pig-feces(P1)-at-64-hours-(-80°C)_DOWN NA k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella -bsdb:1048/54/1_Microbiome:Unspiked-pig-feces(P1)-at-64-hours-(-20°C)_vs_Unspiked-pig-feces(P1)-at-16-hours-(-20°C)_UP NA k__Bacteria|p__Spirochaetota|c__Spirochaetia|o__Spirochaetales|f__Treponemataceae|g__Treponema -bsdb:1048/54/2_Microbiome:Unspiked-pig-feces(P1)-at-64-hours-(-20°C)_vs_Unspiked-pig-feces(P1)-at-16-hours-(-20°C)_DOWN NA k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella k__Bacteria|p__Bacillota|c__Negativicutes|o__Acidaminococcales|f__Acidaminococcaceae|g__Phascolarctobacterium k__Bacteria|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Faecalibacterium k__Bacteria|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Roseburia -bsdb:1048/55/1_Microbiome:Unspiked-pig-feces(P1)-at-16-hours-(5°C)_vs_Unspiked-pig-feces(P1)-at-16-hours-(-20°C)_UP NA k__Bacteria|p__Spirochaetota|c__Spirochaetia|o__Spirochaetales|f__Treponemataceae|g__Treponema k__Bacteria|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Faecalibacterium k__Bacteria|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Roseburia -bsdb:1048/55/2_Microbiome:Unspiked-pig-feces(P1)-at-16-hours-(5°C)_vs_Unspiked-pig-feces(P1)-at-16-hours-(-20°C)_DOWN NA k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella k__Bacteria|p__Bacillota|c__Negativicutes|o__Acidaminococcales|f__Acidaminococcaceae|g__Phascolarctobacterium -bsdb:1048/56/1_Microbiome:Unspiked-pig-feces(P1)-at-64-hours-(5°C)_vs_Unspiked-pig-feces(P1)-at-16-hours-(-20°C)_UP NA k__Bacteria|p__Spirochaetota|c__Spirochaetia|o__Spirochaetales|f__Treponemataceae|g__Treponema k__Bacteria|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Faecalibacterium k__Bacteria|p__Bacillota|c__Negativicutes|o__Acidaminococcales|f__Acidaminococcaceae|g__Phascolarctobacterium k__Bacteria|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Roseburia -bsdb:1048/56/2_Microbiome:Unspiked-pig-feces(P1)-at-64-hours-(5°C)_vs_Unspiked-pig-feces(P1)-at-16-hours-(-20°C)_DOWN NA k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella -bsdb:1048/57/1_Microbiome:Unspiked-pig-feces(P1)-at-16-hours-(22°C)_vs_Unspiked-pig-feces(P1)-at-16-hours-(-20°C)_UP NA k__Bacteria|p__Spirochaetota|c__Spirochaetia|o__Spirochaetales|f__Treponemataceae|g__Treponema k__Bacteria|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Faecalibacterium k__Bacteria|p__Bacillota|c__Negativicutes|o__Acidaminococcales|f__Acidaminococcaceae|g__Phascolarctobacterium k__Bacteria|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Roseburia -bsdb:1048/57/2_Microbiome:Unspiked-pig-feces(P1)-at-16-hours-(22°C)_vs_Unspiked-pig-feces(P1)-at-16-hours-(-20°C)_DOWN NA k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella -bsdb:1048/58/1_Microbiome:Unspiked-pig-feces(P1)-at-64-hours-(22°C)_vs_Unspiked-pig-feces(P1)-at-16-hours-(-20°C)_UP NA k__Bacteria|p__Spirochaetota|c__Spirochaetia|o__Spirochaetales|f__Treponemataceae|g__Treponema k__Bacteria|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Faecalibacterium k__Bacteria|p__Bacillota|c__Negativicutes|o__Acidaminococcales|f__Acidaminococcaceae|g__Phascolarctobacterium k__Bacteria|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Roseburia -bsdb:1048/58/2_Microbiome:Unspiked-pig-feces(P1)-at-64-hours-(22°C)_vs_Unspiked-pig-feces(P1)-at-16-hours-(-20°C)_DOWN NA k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella -bsdb:1048/62/1_Microbiome:Unspiked-pig-feces(P1)-at-16-hours-(5°C)_vs_Unspiked-pig-feces(P1)-at-64-hours-(-20°C)_UP NA k__Bacteria|p__Spirochaetota|c__Spirochaetia|o__Spirochaetales|f__Treponemataceae|g__Treponema k__Bacteria|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Faecalibacterium -bsdb:1048/62/2_Microbiome:Unspiked-pig-feces(P1)-at-16-hours-(5°C)_vs_Unspiked-pig-feces(P1)-at-64-hours-(-20°C)_DOWN NA k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella k__Bacteria|p__Bacillota|c__Negativicutes|o__Acidaminococcales|f__Acidaminococcaceae|g__Phascolarctobacterium k__Bacteria|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Roseburia -bsdb:1048/64/1_Microbiome:Unspiked-pig-feces(P1)-at-64-hours-(5°C)_vs_Unspiked-pig-feces(P1)-at-64-hours-(-20°C)_UP NA k__Bacteria|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Faecalibacterium k__Bacteria|p__Bacillota|c__Negativicutes|o__Acidaminococcales|f__Acidaminococcaceae|g__Phascolarctobacterium k__Bacteria|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Roseburia -bsdb:1048/64/2_Microbiome:Unspiked-pig-feces(P1)-at-64-hours-(5°C)_vs_Unspiked-pig-feces(P1)-at-64-hours-(-20°C)_DOWN NA k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella k__Bacteria|p__Spirochaetota|c__Spirochaetia|o__Spirochaetales|f__Treponemataceae|g__Treponema -bsdb:1048/65/1_Microbiome:Unspiked-pig-feces(P1)-at-16-hours-(22°C)_vs_Unspiked-pig-feces(P1)-at-64-hours-(-20°C)_UP NA k__Bacteria|p__Spirochaetota|c__Spirochaetia|o__Spirochaetales|f__Treponemataceae|g__Treponema k__Bacteria|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Faecalibacterium k__Bacteria|p__Bacillota|c__Negativicutes|o__Acidaminococcales|f__Acidaminococcaceae|g__Phascolarctobacterium k__Bacteria|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Roseburia -bsdb:1048/65/2_Microbiome:Unspiked-pig-feces(P1)-at-16-hours-(22°C)_vs_Unspiked-pig-feces(P1)-at-64-hours-(-20°C)_DOWN NA k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella -bsdb:1048/66/1_Microbiome:Unspiked-pig-feces(P1)-at-64-hours-(22°C)_vs_Unspiked-pig-feces(P1)-at-64-hours-(-20°C)_UP NA k__Bacteria|p__Spirochaetota|c__Spirochaetia|o__Spirochaetales|f__Treponemataceae|g__Treponema k__Bacteria|p__Bacillota|c__Negativicutes|o__Acidaminococcales|f__Acidaminococcaceae|g__Phascolarctobacterium k__Bacteria|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Faecalibacterium k__Bacteria|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Roseburia -bsdb:1048/66/2_Microbiome:Unspiked-pig-feces(P1)-at-64-hours-(22°C)_vs_Unspiked-pig-feces(P1)-at-64-hours-(-20°C)_DOWN NA k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella -bsdb:1048/67/1_Microbiome:Unspiked-pig-feces(P1)-at-64-hours-(5°C)_vs_Unspiked-pig-feces(P1)-at-16-hours-(5°C)_UP NA k__Bacteria|p__Spirochaetota|c__Spirochaetia|o__Spirochaetales|f__Treponemataceae|g__Treponema k__Bacteria|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Faecalibacterium k__Bacteria|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Roseburia -bsdb:1048/67/2_Microbiome:Unspiked-pig-feces(P1)-at-64-hours-(5°C)_vs_Unspiked-pig-feces(P1)-at-16-hours-(5°C)_DOWN NA k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella k__Bacteria|p__Bacillota|c__Negativicutes|o__Acidaminococcales|f__Acidaminococcaceae|g__Phascolarctobacterium -bsdb:1048/68/1_Microbiome:Unspiked-pig-feces(P1)-at-16-hours-(22°C)_vs_Unspiked-pig-feces(P1)-at-16-hours-(5°C)_UP NA k__Bacteria|p__Spirochaetota|c__Spirochaetia|o__Spirochaetales|f__Treponemataceae|g__Treponema k__Bacteria|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Faecalibacterium k__Bacteria|p__Bacillota|c__Negativicutes|o__Acidaminococcales|f__Acidaminococcaceae|g__Phascolarctobacterium k__Bacteria|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Roseburia -bsdb:1048/68/2_Microbiome:Unspiked-pig-feces(P1)-at-16-hours-(22°C)_vs_Unspiked-pig-feces(P1)-at-16-hours-(5°C)_DOWN NA k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella -bsdb:1048/69/1_Microbiome:Unspiked-pig-feces(P1)-at-64-hours-(22°C)_vs_Unspiked-pig-feces(P1)-at-16-hours-(5°C)_UP NA k__Bacteria|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Faecalibacterium k__Bacteria|p__Bacillota|c__Negativicutes|o__Acidaminococcales|f__Acidaminococcaceae|g__Phascolarctobacterium k__Bacteria|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Roseburia -bsdb:1048/69/2_Microbiome:Unspiked-pig-feces(P1)-at-64-hours-(22°C)_vs_Unspiked-pig-feces(P1)-at-16-hours-(5°C)_DOWN NA k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella k__Bacteria|p__Spirochaetota|c__Spirochaetia|o__Spirochaetales|f__Treponemataceae|g__Treponema -bsdb:1048/70/1_Microbiome:Unspiked-pig-feces(P1)-at-16-hours-(22°C)_vs_Unspiked-pig-feces(P1)-at-64-hours-(5°C)_UP NA k__Bacteria|p__Spirochaetota|c__Spirochaetia|o__Spirochaetales|f__Treponemataceae|g__Treponema k__Bacteria|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Faecalibacterium -bsdb:1048/70/2_Microbiome:Unspiked-pig-feces(P1)-at-16-hours-(22°C)_vs_Unspiked-pig-feces(P1)-at-64-hours-(5°C)_DOWN NA k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella k__Bacteria|p__Bacillota|c__Negativicutes|o__Acidaminococcales|f__Acidaminococcaceae|g__Phascolarctobacterium k__Bacteria|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Roseburia -bsdb:1048/71/1_Microbiome:Unspiked-pig-feces(P1)-at-64-hours-(22°C)_vs_Unspiked-pig-feces(P1)-at-64-hours-(5°C)_UP NA k__Bacteria|p__Spirochaetota|c__Spirochaetia|o__Spirochaetales|f__Treponemataceae|g__Treponema k__Bacteria|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Faecalibacterium -bsdb:1048/71/2_Microbiome:Unspiked-pig-feces(P1)-at-64-hours-(22°C)_vs_Unspiked-pig-feces(P1)-at-64-hours-(5°C)_DOWN NA k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella k__Bacteria|p__Bacillota|c__Negativicutes|o__Acidaminococcales|f__Acidaminococcaceae|g__Phascolarctobacterium k__Bacteria|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Roseburia -bsdb:1048/72/1_Microbiome:Unspiked-pig-feces(P1)-at-64-hours-(22°C)_vs_Unspiked-pig-feces(P1)-at-16-hours-(22°C)_UP NA k__Bacteria|p__Spirochaetota|c__Spirochaetia|o__Spirochaetales|f__Treponemataceae|g__Treponema k__Bacteria|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Faecalibacterium -bsdb:1048/72/2_Microbiome:Unspiked-pig-feces(P1)-at-64-hours-(22°C)_vs_Unspiked-pig-feces(P1)-at-16-hours-(22°C)_DOWN NA k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella k__Bacteria|p__Bacillota|c__Negativicutes|o__Acidaminococcales|f__Acidaminococcaceae|g__Phascolarctobacterium k__Bacteria|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Roseburia -bsdb:1048/109/1_Microbiome:Unspiked-pig-feces(P2)-at-16-hours-(-80°C)_vs_Unspiked-pig-feces(P2)-at-0-hour_UP NA k__Bacteria|p__Bacillota|c__Negativicutes|o__Acidaminococcales|f__Acidaminococcaceae|g__Phascolarctobacterium k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella k__Bacteria|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Roseburia -bsdb:1048/109/2_Microbiome:Unspiked-pig-feces(P2)-at-16-hours-(-80°C)_vs_Unspiked-pig-feces(P2)-at-0-hour_DOWN NA k__Bacteria|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Faecalibacterium k__Bacteria|p__Spirochaetota|c__Spirochaetia|o__Spirochaetales|f__Treponemataceae|g__Treponema -bsdb:1048/110/1_Microbiome:Unspiked-pig-feces(P2)-at-64-hours-(-80°C)_vs_Unspiked-pig-feces(P2)-at-0-hour_UP NA k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella -bsdb:1048/110/2_Microbiome:Unspiked-pig-feces(P2)-at-64-hours-(-80°C)_vs_Unspiked-pig-feces(P2)-at-0-hour_DOWN NA k__Bacteria|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Faecalibacterium k__Bacteria|p__Bacillota|c__Negativicutes|o__Acidaminococcales|f__Acidaminococcaceae|g__Phascolarctobacterium k__Bacteria|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Roseburia k__Bacteria|p__Spirochaetota|c__Spirochaetia|o__Spirochaetales|f__Treponemataceae|g__Treponema -bsdb:1048/111/1_Microbiome:Unspiked-pig-feces(P2)-at-16-hours-(-20°C)_vs_Unspiked-pig-feces(P2)-at-0-hour_UP NA k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella k__Bacteria|p__Bacillota|c__Negativicutes|o__Acidaminococcales|f__Acidaminococcaceae|g__Phascolarctobacterium k__Bacteria|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Roseburia -bsdb:1048/111/2_Microbiome:Unspiked-pig-feces(P2)-at-16-hours-(-20°C)_vs_Unspiked-pig-feces(P2)-at-0-hour_DOWN NA k__Bacteria|p__Spirochaetota|c__Spirochaetia|o__Spirochaetales|f__Treponemataceae|g__Treponema k__Bacteria|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Faecalibacterium -bsdb:1048/112/1_Microbiome:Unspiked-pig-feces(P2)-at-64-hours-(-20°C)_vs_Unspiked-pig-feces(P2)-at-0-hour_UP NA k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella k__Bacteria|p__Bacillota|c__Negativicutes|o__Acidaminococcales|f__Acidaminococcaceae|g__Phascolarctobacterium -bsdb:1048/112/2_Microbiome:Unspiked-pig-feces(P2)-at-64-hours-(-20°C)_vs_Unspiked-pig-feces(P2)-at-0-hour_DOWN NA k__Bacteria|p__Spirochaetota|c__Spirochaetia|o__Spirochaetales|f__Treponemataceae|g__Treponema k__Bacteria|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Faecalibacterium k__Bacteria|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Roseburia -bsdb:1048/113/1_Microbiome:Unspiked-pig-feces(P2)-at-16-hours-(5°C)_vs_Unspiked-pig-feces(P2)-at-0-hour_UP NA k__Bacteria|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Faecalibacterium k__Bacteria|p__Bacillota|c__Negativicutes|o__Acidaminococcales|f__Acidaminococcaceae|g__Phascolarctobacterium k__Bacteria|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Roseburia -bsdb:1048/113/2_Microbiome:Unspiked-pig-feces(P2)-at-16-hours-(5°C)_vs_Unspiked-pig-feces(P2)-at-0-hour_DOWN NA k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella k__Bacteria|p__Spirochaetota|c__Spirochaetia|o__Spirochaetales|f__Treponemataceae|g__Treponema -bsdb:1048/114/1_Microbiome:Unspiked-pig-feces(P2)-at-64-hours-(5°C)_vs_Unspiked-pig-feces(P2)-at-0-hour_UP NA k__Bacteria|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Faecalibacterium k__Bacteria|p__Bacillota|c__Negativicutes|o__Acidaminococcales|f__Acidaminococcaceae|g__Phascolarctobacterium k__Bacteria|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Roseburia -bsdb:1048/114/2_Microbiome:Unspiked-pig-feces(P2)-at-64-hours-(5°C)_vs_Unspiked-pig-feces(P2)-at-0-hour_DOWN NA k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella k__Bacteria|p__Spirochaetota|c__Spirochaetia|o__Spirochaetales|f__Treponemataceae|g__Treponema -bsdb:1048/115/1_Microbiome:Unspiked-pig-feces(P2)-at-16-hours-(22°C)_vs_Unspiked-pig-feces(P2)-at-0-hour_UP NA k__Bacteria|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Faecalibacterium k__Bacteria|p__Bacillota|c__Negativicutes|o__Acidaminococcales|f__Acidaminococcaceae|g__Phascolarctobacterium k__Bacteria|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Roseburia -bsdb:1048/115/2_Microbiome:Unspiked-pig-feces(P2)-at-16-hours-(22°C)_vs_Unspiked-pig-feces(P2)-at-0-hour_DOWN NA k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella k__Bacteria|p__Spirochaetota|c__Spirochaetia|o__Spirochaetales|f__Treponemataceae|g__Treponema -bsdb:1048/116/1_Microbiome:Unspiked-pig-feces(P2)-at-64-hours-(22°C)_vs_Unspiked-pig-feces(P2)-at-0-hour_UP NA k__Bacteria|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Faecalibacterium k__Bacteria|p__Bacillota|c__Negativicutes|o__Acidaminococcales|f__Acidaminococcaceae|g__Phascolarctobacterium k__Bacteria|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Roseburia -bsdb:1048/116/2_Microbiome:Unspiked-pig-feces(P2)-at-64-hours-(22°C)_vs_Unspiked-pig-feces(P2)-at-0-hour_DOWN NA k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella k__Bacteria|p__Spirochaetota|c__Spirochaetia|o__Spirochaetales|f__Treponemataceae|g__Treponema -bsdb:1048/117/1_Microbiome:Unspiked-pig-feces(P2)-at-64-hours-(80°C)_vs_Unspiked-pig-feces(P2)-at-16-hours-(-80°C)_UP NA k__Bacteria|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Faecalibacterium -bsdb:1048/117/2_Microbiome:Unspiked-pig-feces(P2)-at-64-hours-(80°C)_vs_Unspiked-pig-feces(P2)-at-16-hours-(-80°C)_DOWN NA k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella k__Bacteria|p__Spirochaetota|c__Spirochaetia|o__Spirochaetales|f__Treponemataceae|g__Treponema k__Bacteria|p__Bacillota|c__Negativicutes|o__Acidaminococcales|f__Acidaminococcaceae|g__Phascolarctobacterium k__Bacteria|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Roseburia -bsdb:1048/118/1_Microbiome:Unspiked-pig-feces(P2)-at-16-hours-(-20°C)_vs_Unspiked-pig-feces(P2)-at-16-hours-(-80°C)_UP NA k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella k__Bacteria|p__Bacillota|c__Negativicutes|o__Acidaminococcales|f__Acidaminococcaceae|g__Phascolarctobacterium -bsdb:1048/118/2_Microbiome:Unspiked-pig-feces(P2)-at-16-hours-(-20°C)_vs_Unspiked-pig-feces(P2)-at-16-hours-(-80°C)_DOWN NA k__Bacteria|p__Spirochaetota|c__Spirochaetia|o__Spirochaetales|f__Treponemataceae|g__Treponema k__Bacteria|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Faecalibacterium k__Bacteria|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Roseburia -bsdb:1048/119/1_Microbiome:Unspiked-pig-feces(P2)-at-64-hours-(-20°C)_vs_Unspiked-pig-feces(P2)-at-16-hours-(-80°C)_UP NA k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella k__Bacteria|p__Bacillota|c__Negativicutes|o__Acidaminococcales|f__Acidaminococcaceae|g__Phascolarctobacterium -bsdb:1048/119/2_Microbiome:Unspiked-pig-feces(P2)-at-64-hours-(-20°C)_vs_Unspiked-pig-feces(P2)-at-16-hours-(-80°C)_DOWN NA k__Bacteria|p__Spirochaetota|c__Spirochaetia|o__Spirochaetales|f__Treponemataceae|g__Treponema k__Bacteria|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Faecalibacterium k__Bacteria|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Roseburia -bsdb:1048/120/1_Microbiome:Unspiked-pig-feces(P2)-at-16-hours-(5°C)_vs_Unspiked-pig-feces(P2)-at-16-hours-(-80°C)_UP NA k__Bacteria|p__Spirochaetota|c__Spirochaetia|o__Spirochaetales|f__Treponemataceae|g__Treponema k__Bacteria|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Faecalibacterium k__Bacteria|p__Bacillota|c__Negativicutes|o__Acidaminococcales|f__Acidaminococcaceae|g__Phascolarctobacterium k__Bacteria|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Roseburia -bsdb:1048/120/2_Microbiome:Unspiked-pig-feces(P2)-at-16-hours-(5°C)_vs_Unspiked-pig-feces(P2)-at-16-hours-(-80°C)_DOWN NA k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella -bsdb:1048/121/1_Microbiome:Unspiked-pig-feces(P2)-at-64-hours-(5°C)_vs_Unspiked-pig-feces(P2)-at-16-hours-(-80°C)_UP NA k__Bacteria|p__Spirochaetota|c__Spirochaetia|o__Spirochaetales|f__Treponemataceae|g__Treponema k__Bacteria|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Faecalibacterium k__Bacteria|p__Bacillota|c__Negativicutes|o__Acidaminococcales|f__Acidaminococcaceae|g__Phascolarctobacterium k__Bacteria|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Roseburia -bsdb:1048/121/2_Microbiome:Unspiked-pig-feces(P2)-at-64-hours-(5°C)_vs_Unspiked-pig-feces(P2)-at-16-hours-(-80°C)_DOWN NA k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella -bsdb:1048/122/1_Microbiome:Unspiked-pig-feces(P2)-at-16-hours-(22°C)_vs_Unspiked-pig-feces(P2)-at-16-hours-(-80°C)_UP NA k__Bacteria|p__Spirochaetota|c__Spirochaetia|o__Spirochaetales|f__Treponemataceae|g__Treponema k__Bacteria|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Faecalibacterium k__Bacteria|p__Bacillota|c__Negativicutes|o__Acidaminococcales|f__Acidaminococcaceae|g__Phascolarctobacterium k__Bacteria|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Roseburia -bsdb:1048/122/2_Microbiome:Unspiked-pig-feces(P2)-at-16-hours-(22°C)_vs_Unspiked-pig-feces(P2)-at-16-hours-(-80°C)_DOWN NA k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella -bsdb:1048/123/1_Microbiome:Unspiked-pig-feces(P2)-at-64-hours-(22°C)_vs_Unspiked-pig-feces(P2)-at-16-hours-(-80°C)_UP NA k__Bacteria|p__Spirochaetota|c__Spirochaetia|o__Spirochaetales|f__Treponemataceae|g__Treponema k__Bacteria|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Faecalibacterium k__Bacteria|p__Bacillota|c__Negativicutes|o__Acidaminococcales|f__Acidaminococcaceae|g__Phascolarctobacterium k__Bacteria|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Roseburia -bsdb:1048/123/2_Microbiome:Unspiked-pig-feces(P2)-at-64-hours-(22°C)_vs_Unspiked-pig-feces(P2)-at-16-hours-(-80°C)_DOWN NA k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella -bsdb:1048/124/1_Microbiome:Unspiked-pig-feces(P2)-at-16-hours-(-20°C)_vs_Unspiked-pig-feces(P2)-at-64-hours-(-80°C)_UP NA k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella k__Bacteria|p__Spirochaetota|c__Spirochaetia|o__Spirochaetales|f__Treponemataceae|g__Treponema k__Bacteria|p__Bacillota|c__Negativicutes|o__Acidaminococcales|f__Acidaminococcaceae|g__Phascolarctobacterium k__Bacteria|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Roseburia -bsdb:1048/124/2_Microbiome:Unspiked-pig-feces(P2)-at-16-hours-(-20°C)_vs_Unspiked-pig-feces(P2)-at-64-hours-(-80°C)_DOWN NA k__Bacteria|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Faecalibacterium -bsdb:1048/125/1_Microbiome:Unspiked-pig-feces(P2)-at-64-hours-(-20°C)_vs_Unspiked-pig-feces(P2)-at-64-hours-(-80°C)_UP NA k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella k__Bacteria|p__Spirochaetota|c__Spirochaetia|o__Spirochaetales|f__Treponemataceae|g__Treponema k__Bacteria|p__Bacillota|c__Negativicutes|o__Acidaminococcales|f__Acidaminococcaceae|g__Phascolarctobacterium -bsdb:1048/125/2_Microbiome:Unspiked-pig-feces(P2)-at-64-hours-(-20°C)_vs_Unspiked-pig-feces(P2)-at-64-hours-(-80°C)_DOWN NA k__Bacteria|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Faecalibacterium k__Bacteria|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Roseburia -bsdb:1048/126/1_Microbiome:Unspiked-pig-feces(P2)-at-16-hours-(5°C)_vs_Unspiked-pig-feces(P2)-at-64-hours-(-80°C)_UP NA k__Bacteria|p__Spirochaetota|c__Spirochaetia|o__Spirochaetales|f__Treponemataceae|g__Treponema k__Bacteria|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Faecalibacterium k__Bacteria|p__Bacillota|c__Negativicutes|o__Acidaminococcales|f__Acidaminococcaceae|g__Phascolarctobacterium k__Bacteria|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Roseburia -bsdb:1048/126/2_Microbiome:Unspiked-pig-feces(P2)-at-16-hours-(5°C)_vs_Unspiked-pig-feces(P2)-at-64-hours-(-80°C)_DOWN NA k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella -bsdb:1048/127/1_Microbiome:Unspiked-pig-feces(P2)-at-64-hours-(5°C)_vs_Unspiked-pig-feces(P2)-at-64-hours-(-80°C)_UP NA k__Bacteria|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Faecalibacterium k__Bacteria|p__Bacillota|c__Negativicutes|o__Acidaminococcales|f__Acidaminococcaceae|g__Phascolarctobacterium k__Bacteria|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Roseburia k__Bacteria|p__Spirochaetota|c__Spirochaetia|o__Spirochaetales|f__Treponemataceae|g__Treponema -bsdb:1048/127/2_Microbiome:Unspiked-pig-feces(P2)-at-64-hours-(5°C)_vs_Unspiked-pig-feces(P2)-at-64-hours-(-80°C)_DOWN NA k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella -bsdb:1048/128/1_Microbiome:Unspiked-pig-feces(P2)-at-16-hours-(22°C)_vs_Unspiked-pig-feces(P2)-at-64-hours-(-80°C)_UP NA k__Bacteria|p__Spirochaetota|c__Spirochaetia|o__Spirochaetales|f__Treponemataceae|g__Treponema k__Bacteria|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Faecalibacterium k__Bacteria|p__Bacillota|c__Negativicutes|o__Acidaminococcales|f__Acidaminococcaceae|g__Phascolarctobacterium k__Bacteria|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Roseburia -bsdb:1048/128/2_Microbiome:Unspiked-pig-feces(P2)-at-16-hours-(22°C)_vs_Unspiked-pig-feces(P2)-at-64-hours-(-80°C)_DOWN NA k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella -bsdb:1048/129/1_Microbiome:Unspiked-pig-feces(P2)-at-64-hours-(22°C)_vs_Unspiked-pig-feces(P2)-at-64-hours-(-80°C)_UP NA k__Bacteria|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Faecalibacterium k__Bacteria|p__Bacillota|c__Negativicutes|o__Acidaminococcales|f__Acidaminococcaceae|g__Phascolarctobacterium k__Bacteria|p__Spirochaetota|c__Spirochaetia|o__Spirochaetales|f__Treponemataceae|g__Treponema k__Bacteria|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Roseburia -bsdb:1048/129/2_Microbiome:Unspiked-pig-feces(P2)-at-64-hours-(22°C)_vs_Unspiked-pig-feces(P2)-at-64-hours-(-80°C)_DOWN NA k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella -bsdb:1048/130/1_Microbiome:Unspiked-pig-feces(P2)-at-64-hours-(-20°C)_vs_Unspiked-pig-feces(P2)-at-16-hours-(-20°C)_UP NA k__Bacteria|p__Bacillota|c__Negativicutes|o__Acidaminococcales|f__Acidaminococcaceae|g__Phascolarctobacterium -bsdb:1048/130/2_Microbiome:Unspiked-pig-feces(P2)-at-64-hours-(-20°C)_vs_Unspiked-pig-feces(P2)-at-16-hours-(-20°C)_DOWN NA k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella k__Bacteria|p__Spirochaetota|c__Spirochaetia|o__Spirochaetales|f__Treponemataceae|g__Treponema k__Bacteria|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Faecalibacterium k__Bacteria|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Roseburia -bsdb:1048/131/1_Microbiome:Unspiked-pig-feces(P2)-at-16-hours-(5°C)_vs_Unspiked-pig-feces(P2)-at-16-hours-(-20°C)_UP NA k__Bacteria|p__Spirochaetota|c__Spirochaetia|o__Spirochaetales|f__Treponemataceae|g__Treponema k__Bacteria|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Faecalibacterium k__Bacteria|p__Bacillota|c__Negativicutes|o__Acidaminococcales|f__Acidaminococcaceae|g__Phascolarctobacterium k__Bacteria|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Roseburia -bsdb:1048/131/2_Microbiome:Unspiked-pig-feces(P2)-at-16-hours-(5°C)_vs_Unspiked-pig-feces(P2)-at-16-hours-(-20°C)_DOWN NA k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella -bsdb:1048/132/1_Microbiome:Unspiked-pig-feces(P2)-at-64-hours-(5°C)_vs_Unspiked-pig-feces(P2)-at-16-hours-(-20°C)_UP NA k__Bacteria|p__Spirochaetota|c__Spirochaetia|o__Spirochaetales|f__Treponemataceae|g__Treponema k__Bacteria|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Faecalibacterium k__Bacteria|p__Bacillota|c__Negativicutes|o__Acidaminococcales|f__Acidaminococcaceae|g__Phascolarctobacterium k__Bacteria|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Roseburia -bsdb:1048/132/2_Microbiome:Unspiked-pig-feces(P2)-at-64-hours-(5°C)_vs_Unspiked-pig-feces(P2)-at-16-hours-(-20°C)_DOWN NA k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella -bsdb:1048/133/1_Microbiome:Unspiked-pig-feces(P2)-at-16-hours-(22°C)_vs_Unspiked-pig-feces(P2)-at-16-hours-(-20°C)_UP NA k__Bacteria|p__Spirochaetota|c__Spirochaetia|o__Spirochaetales|f__Treponemataceae|g__Treponema k__Bacteria|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Faecalibacterium k__Bacteria|p__Bacillota|c__Negativicutes|o__Acidaminococcales|f__Acidaminococcaceae|g__Phascolarctobacterium k__Bacteria|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Roseburia -bsdb:1048/133/2_Microbiome:Unspiked-pig-feces(P2)-at-16-hours-(22°C)_vs_Unspiked-pig-feces(P2)-at-16-hours-(-20°C)_DOWN NA k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella -bsdb:1048/134/1_Microbiome:Unspiked-pig-feces(P2)-at-64-hours-(22°C)_vs_Unspiked-pig-feces(P2)-at-16-hours-(-20°C)_UP NA k__Bacteria|p__Spirochaetota|c__Spirochaetia|o__Spirochaetales|f__Treponemataceae|g__Treponema k__Bacteria|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Faecalibacterium k__Bacteria|p__Bacillota|c__Negativicutes|o__Acidaminococcales|f__Acidaminococcaceae|g__Phascolarctobacterium k__Bacteria|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Roseburia -bsdb:1048/134/2_Microbiome:Unspiked-pig-feces(P2)-at-64-hours-(22°C)_vs_Unspiked-pig-feces(P2)-at-16-hours-(-20°C)_DOWN NA k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella -bsdb:1048/135/1_Microbiome:Unspiked-pig-feces(P2)-at-16-hours-(5°C)_vs_Unspiked-pig-feces(P2)-at-64-hours-(-20°C)_UP NA k__Bacteria|p__Spirochaetota|c__Spirochaetia|o__Spirochaetales|f__Treponemataceae|g__Treponema k__Bacteria|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Faecalibacterium k__Bacteria|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Roseburia -bsdb:1048/135/2_Microbiome:Unspiked-pig-feces(P2)-at-16-hours-(5°C)_vs_Unspiked-pig-feces(P2)-at-64-hours-(-20°C)_DOWN NA k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella k__Bacteria|p__Bacillota|c__Negativicutes|o__Acidaminococcales|f__Acidaminococcaceae|g__Phascolarctobacterium -bsdb:1048/136/1_Microbiome:Unspiked-pig-feces(P2)-at-64-hours-(5°C)_vs_Unspiked-pig-feces(P2)-at-64-hours-(-20°C)_UP NA k__Bacteria|p__Spirochaetota|c__Spirochaetia|o__Spirochaetales|f__Treponemataceae|g__Treponema k__Bacteria|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Faecalibacterium k__Bacteria|p__Bacillota|c__Negativicutes|o__Acidaminococcales|f__Acidaminococcaceae|g__Phascolarctobacterium k__Bacteria|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Roseburia -bsdb:1048/136/2_Microbiome:Unspiked-pig-feces(P2)-at-64-hours-(5°C)_vs_Unspiked-pig-feces(P2)-at-64-hours-(-20°C)_DOWN NA k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella -bsdb:1048/137/1_Microbiome:Unspiked-pig-feces(P2)-at-16-hours-(22°C)_vs_Unspiked-pig-feces(P2)-at-64-hours-(-20°C)_UP NA k__Bacteria|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Faecalibacterium k__Bacteria|p__Spirochaetota|c__Spirochaetia|o__Spirochaetales|f__Treponemataceae|g__Treponema k__Bacteria|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Roseburia k__Bacteria|p__Bacillota|c__Negativicutes|o__Acidaminococcales|f__Acidaminococcaceae|g__Phascolarctobacterium -bsdb:1048/137/2_Microbiome:Unspiked-pig-feces(P2)-at-16-hours-(22°C)_vs_Unspiked-pig-feces(P2)-at-64-hours-(-20°C)_DOWN NA k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella -bsdb:1048/138/1_Microbiome:Unspiked-pig-feces(P2)-at-64-hours-(22°C)_vs_Unspiked-pig-feces(P2)-at-64-hours-(-20°C)_UP NA k__Bacteria|p__Spirochaetota|c__Spirochaetia|o__Spirochaetales|f__Treponemataceae|g__Treponema k__Bacteria|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Faecalibacterium k__Bacteria|p__Bacillota|c__Negativicutes|o__Acidaminococcales|f__Acidaminococcaceae|g__Phascolarctobacterium k__Bacteria|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Roseburia -bsdb:1048/138/2_Microbiome:Unspiked-pig-feces(P2)-at-64-hours-(22°C)_vs_Unspiked-pig-feces(P2)-at-64-hours-(-20°C)_DOWN NA k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella -bsdb:1048/139/1_Microbiome:Unspiked-pig-feces(P2)-at-64-hours-(5°C)_vs_Unspiked-pig-feces(P2)-at-16-hours-(5°C)_UP NA k__Bacteria|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Faecalibacterium k__Bacteria|p__Bacillota|c__Negativicutes|o__Acidaminococcales|f__Acidaminococcaceae|g__Phascolarctobacterium k__Bacteria|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Roseburia -bsdb:1048/139/2_Microbiome:Unspiked-pig-feces(P2)-at-64-hours-(5°C)_vs_Unspiked-pig-feces(P2)-at-16-hours-(5°C)_DOWN NA k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella k__Bacteria|p__Spirochaetota|c__Spirochaetia|o__Spirochaetales|f__Treponemataceae|g__Treponema -bsdb:1048/140/1_Microbiome:Unspiked-pig-feces(P2)-at-16-hours-(22°C)_vs_Unspiked-pig-feces(P2)-at-16-hours-(5°C)_UP NA k__Bacteria|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Faecalibacterium k__Bacteria|p__Bacillota|c__Negativicutes|o__Acidaminococcales|f__Acidaminococcaceae|g__Phascolarctobacterium k__Bacteria|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Roseburia -bsdb:1048/140/2_Microbiome:Unspiked-pig-feces(P2)-at-16-hours-(22°C)_vs_Unspiked-pig-feces(P2)-at-16-hours-(5°C)_DOWN NA k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella k__Bacteria|p__Spirochaetota|c__Spirochaetia|o__Spirochaetales|f__Treponemataceae|g__Treponema -bsdb:1048/141/1_Microbiome:Unspiked-pig-feces(P2)-at-64-hours-(22°C)_vs_Unspiked-pig-feces(P2)-at-16-hours-(5°C)_UP NA k__Bacteria|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Faecalibacterium k__Bacteria|p__Bacillota|c__Negativicutes|o__Acidaminococcales|f__Acidaminococcaceae|g__Phascolarctobacterium k__Bacteria|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Roseburia -bsdb:1048/141/2_Microbiome:Unspiked-pig-feces(P2)-at-64-hours-(22°C)_vs_Unspiked-pig-feces(P2)-at-16-hours-(5°C)_DOWN NA k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella k__Bacteria|p__Spirochaetota|c__Spirochaetia|o__Spirochaetales|f__Treponemataceae|g__Treponema -bsdb:1048/142/1_Microbiome:Unspiked-pig-feces(P2)-at-16-hours-(22°C)_vs_Unspiked-pig-feces(P2)-at-64-hours-(5°C)_UP NA k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella k__Bacteria|p__Spirochaetota|c__Spirochaetia|o__Spirochaetales|f__Treponemataceae|g__Treponema -bsdb:1048/142/2_Microbiome:Unspiked-pig-feces(P2)-at-16-hours-(22°C)_vs_Unspiked-pig-feces(P2)-at-64-hours-(5°C)_DOWN NA k__Bacteria|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Faecalibacterium k__Bacteria|p__Bacillota|c__Negativicutes|o__Acidaminococcales|f__Acidaminococcaceae|g__Phascolarctobacterium k__Bacteria|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Roseburia -bsdb:1048/143/1_Microbiome:Unspiked-pig-feces(P2)-at-64-hours-(22°C)_vs_Unspiked-pig-feces(P2)-at-64-hours-(5°C)_UP NA k__Bacteria|p__Spirochaetota|c__Spirochaetia|o__Spirochaetales|f__Treponemataceae|g__Treponema k__Bacteria|p__Bacillota|c__Negativicutes|o__Acidaminococcales|f__Acidaminococcaceae|g__Phascolarctobacterium -bsdb:1048/143/2_Microbiome:Unspiked-pig-feces(P2)-at-64-hours-(22°C)_vs_Unspiked-pig-feces(P2)-at-64-hours-(5°C)_DOWN NA k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella k__Bacteria|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Faecalibacterium k__Bacteria|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Roseburia -bsdb:1048/144/1_Microbiome:Unspiked-pig-feces(P2)-at-64-hours-(22°C)_vs_Unspiked-pig-feces(P2)-at-16-hours-(22°C)_UP NA k__Bacteria|p__Spirochaetota|c__Spirochaetia|o__Spirochaetales|f__Treponemataceae|g__Treponema k__Bacteria|p__Bacillota|c__Negativicutes|o__Acidaminococcales|f__Acidaminococcaceae|g__Phascolarctobacterium k__Bacteria|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Roseburia -bsdb:1048/144/2_Microbiome:Unspiked-pig-feces(P2)-at-64-hours-(22°C)_vs_Unspiked-pig-feces(P2)-at-16-hours-(22°C)_DOWN NA k__Bacteria|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Faecalibacterium k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella -bsdb:1048/145/1_Microbiome:Unspiked-sewage-samples-(S1)-at-16-hours-(-80°C)_vs_Unspiked-sewage-samples-(S1)-at-0-hours_UP NA k__Bacteria|p__Campylobacterota|c__Epsilonproteobacteria|o__Campylobacterales|f__Arcobacteraceae|g__Arcobacter k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella k__Bacteria|p__Pseudomonadota|c__Gammaproteobacteria|o__Aeromonadales|f__Aeromonadaceae|g__Aeromonas -bsdb:1048/145/2_Microbiome:Unspiked-sewage-samples-(S1)-at-16-hours-(-80°C)_vs_Unspiked-sewage-samples-(S1)-at-0-hours_DOWN NA k__Bacteria|p__Pseudomonadota|c__Gammaproteobacteria|o__Moraxellales|f__Moraxellaceae|g__Acinetobacter k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Tannerellaceae|g__Parabacteroides -bsdb:1048/146/1_Microbiome:Unspiked-sewage-samples-(S1)-at-64-hours-(-80°C)_vs_Unspiked-sewage-samples-(S1)-at-0-hours_UP NA k__Bacteria|p__Campylobacterota|c__Epsilonproteobacteria|o__Campylobacterales|f__Arcobacteraceae|g__Arcobacter k__Bacteria|p__Pseudomonadota|c__Gammaproteobacteria|o__Aeromonadales|f__Aeromonadaceae|g__Aeromonas -bsdb:1048/146/2_Microbiome:Unspiked-sewage-samples-(S1)-at-64-hours-(-80°C)_vs_Unspiked-sewage-samples-(S1)-at-0-hours_DOWN NA k__Bacteria|p__Pseudomonadota|c__Gammaproteobacteria|o__Moraxellales|f__Moraxellaceae|g__Acinetobacter k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Tannerellaceae|g__Parabacteroides k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella -bsdb:1048/147/1_Microbiome:Unspiked-sewage-samples-(S1)-at-16-hours-(-20°C)_vs_Unspiked-sewage-samples-(S1)-at-0-hours_UP NA k__Bacteria|p__Campylobacterota|c__Epsilonproteobacteria|o__Campylobacterales|f__Arcobacteraceae|g__Arcobacter k__Bacteria|p__Pseudomonadota|c__Gammaproteobacteria|o__Aeromonadales|f__Aeromonadaceae|g__Aeromonas -bsdb:1048/147/2_Microbiome:Unspiked-sewage-samples-(S1)-at-16-hours-(-20°C)_vs_Unspiked-sewage-samples-(S1)-at-0-hours_DOWN NA k__Bacteria|p__Pseudomonadota|c__Gammaproteobacteria|o__Moraxellales|f__Moraxellaceae|g__Acinetobacter k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Tannerellaceae|g__Parabacteroides k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella -bsdb:1048/148/1_Microbiome:Unspiked-sewage-samples-(S1)-at-64-hours-(-20°C)_vs_Unspiked-sewage-samples-(S1)-at-0-hours_UP NA k__Bacteria|p__Campylobacterota|c__Epsilonproteobacteria|o__Campylobacterales|f__Arcobacteraceae|g__Arcobacter k__Bacteria|p__Pseudomonadota|c__Gammaproteobacteria|o__Aeromonadales|f__Aeromonadaceae|g__Aeromonas k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella -bsdb:1048/148/2_Microbiome:Unspiked-sewage-samples-(S1)-at-64-hours-(-20°C)_vs_Unspiked-sewage-samples-(S1)-at-0-hours_DOWN NA k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Tannerellaceae|g__Parabacteroides k__Bacteria|p__Pseudomonadota|c__Gammaproteobacteria|o__Moraxellales|f__Moraxellaceae|g__Acinetobacter -bsdb:1048/149/1_Microbiome:Unspiked-sewage-samples-(S1)-at-16-hours-(5°C)_vs_Unspiked-sewage-samples-(S1)-at-0-hours_UP NA k__Bacteria|p__Campylobacterota|c__Epsilonproteobacteria|o__Campylobacterales|f__Arcobacteraceae|g__Arcobacter k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella k__Bacteria|p__Pseudomonadota|c__Gammaproteobacteria|o__Aeromonadales|f__Aeromonadaceae|g__Aeromonas -bsdb:1048/149/2_Microbiome:Unspiked-sewage-samples-(S1)-at-16-hours-(5°C)_vs_Unspiked-sewage-samples-(S1)-at-0-hours_DOWN NA k__Bacteria|p__Pseudomonadota|c__Gammaproteobacteria|o__Moraxellales|f__Moraxellaceae|g__Acinetobacter k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Tannerellaceae|g__Parabacteroides -bsdb:1048/150/1_Microbiome:Unspiked-sewage-samples-(S1)-at-64-hours-(5°C)_vs_Unspiked-sewage-samples-(S1)-at-0-hours_UP NA k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Tannerellaceae|g__Parabacteroides k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella k__Bacteria|p__Pseudomonadota|c__Gammaproteobacteria|o__Aeromonadales|f__Aeromonadaceae|g__Aeromonas -bsdb:1048/150/2_Microbiome:Unspiked-sewage-samples-(S1)-at-64-hours-(5°C)_vs_Unspiked-sewage-samples-(S1)-at-0-hours_DOWN NA k__Bacteria|p__Campylobacterota|c__Epsilonproteobacteria|o__Campylobacterales|f__Arcobacteraceae|g__Arcobacter k__Bacteria|p__Pseudomonadota|c__Gammaproteobacteria|o__Moraxellales|f__Moraxellaceae|g__Acinetobacter -bsdb:1048/151/1_Microbiome:Unspiked-sewage-samples-(S1)-at-16-hours-(22°C)_vs_Unspiked-sewage-samples-(S1)-at-0-hours_UP NA k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Tannerellaceae|g__Parabacteroides k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella k__Bacteria|p__Pseudomonadota|c__Gammaproteobacteria|o__Aeromonadales|f__Aeromonadaceae|g__Aeromonas -bsdb:1048/151/2_Microbiome:Unspiked-sewage-samples-(S1)-at-16-hours-(22°C)_vs_Unspiked-sewage-samples-(S1)-at-0-hours_DOWN NA k__Bacteria|p__Campylobacterota|c__Epsilonproteobacteria|o__Campylobacterales|f__Arcobacteraceae|g__Arcobacter k__Bacteria|p__Pseudomonadota|c__Gammaproteobacteria|o__Moraxellales|f__Moraxellaceae|g__Acinetobacter -bsdb:1048/152/1_Microbiome:Unspiked-sewage-samples-(S1)-at-64-hours-(22°C)_vs_Unspiked-sewage-samples-(S1)-at-0-hours_UP NA k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella k__Bacteria|p__Pseudomonadota|c__Gammaproteobacteria|o__Aeromonadales|f__Aeromonadaceae|g__Aeromonas -bsdb:1048/152/2_Microbiome:Unspiked-sewage-samples-(S1)-at-64-hours-(22°C)_vs_Unspiked-sewage-samples-(S1)-at-0-hours_DOWN NA k__Bacteria|p__Campylobacterota|c__Epsilonproteobacteria|o__Campylobacterales|f__Arcobacteraceae|g__Arcobacter k__Bacteria|p__Pseudomonadota|c__Gammaproteobacteria|o__Moraxellales|f__Moraxellaceae|g__Acinetobacter k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Tannerellaceae|g__Parabacteroides -bsdb:1048/153/1_Microbiome:Unspiked-sewage-samples-(S1)-at-64-hours-(-80°C)_vs_Unspiked-sewage-samples-(S1)-at-16-hours-(-80°C)_UP NA k__Bacteria|p__Pseudomonadota|c__Gammaproteobacteria|o__Aeromonadales|f__Aeromonadaceae|g__Aeromonas -bsdb:1048/153/2_Microbiome:Unspiked-sewage-samples-(S1)-at-64-hours-(-80°C)_vs_Unspiked-sewage-samples-(S1)-at-16-hours-(-80°C)_DOWN NA k__Bacteria|p__Campylobacterota|c__Epsilonproteobacteria|o__Campylobacterales|f__Arcobacteraceae|g__Arcobacter k__Bacteria|p__Pseudomonadota|c__Gammaproteobacteria|o__Moraxellales|f__Moraxellaceae|g__Acinetobacter k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Tannerellaceae|g__Parabacteroides k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella -bsdb:1048/154/1_Microbiome:Unspiked-sewage-samples-(S1)-at-16-hours-(-20°C)_vs_Unspiked-sewage-samples-(S1)-at-16-hours-(-80°C)_UP NA k__Bacteria|p__Pseudomonadota|c__Gammaproteobacteria|o__Moraxellales|f__Moraxellaceae|g__Acinetobacter -bsdb:1048/154/2_Microbiome:Unspiked-sewage-samples-(S1)-at-16-hours-(-20°C)_vs_Unspiked-sewage-samples-(S1)-at-16-hours-(-80°C)_DOWN NA k__Bacteria|p__Campylobacterota|c__Epsilonproteobacteria|o__Campylobacterales|f__Arcobacteraceae|g__Arcobacter k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Tannerellaceae|g__Parabacteroides k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella k__Bacteria|p__Pseudomonadota|c__Gammaproteobacteria|o__Aeromonadales|f__Aeromonadaceae|g__Aeromonas -bsdb:1048/155/1_Microbiome:Unspiked-sewage-samples-(S1)-at-64-hours-(-20°C)_vs_Unspiked-sewage-samples-(S1)-at-16-hours-(-80°C)_UP NA k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella -bsdb:1048/155/2_Microbiome:Unspiked-sewage-samples-(S1)-at-64-hours-(-20°C)_vs_Unspiked-sewage-samples-(S1)-at-16-hours-(-80°C)_DOWN NA k__Bacteria|p__Campylobacterota|c__Epsilonproteobacteria|o__Campylobacterales|f__Arcobacteraceae|g__Arcobacter k__Bacteria|p__Pseudomonadota|c__Gammaproteobacteria|o__Moraxellales|f__Moraxellaceae|g__Acinetobacter k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Tannerellaceae|g__Parabacteroides k__Bacteria|p__Pseudomonadota|c__Gammaproteobacteria|o__Aeromonadales|f__Aeromonadaceae|g__Aeromonas -bsdb:1048/156/1_Microbiome:Unspiked-sewage-samples-(S1)-at-16-hours-(5°C)_vs_Unspiked-sewage-samples-(S1)-at-16-hours-(-80°C)_UP NA k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Tannerellaceae|g__Parabacteroides k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella -bsdb:1048/156/2_Microbiome:Unspiked-sewage-samples-(S1)-at-16-hours-(5°C)_vs_Unspiked-sewage-samples-(S1)-at-16-hours-(-80°C)_DOWN NA k__Bacteria|p__Campylobacterota|c__Epsilonproteobacteria|o__Campylobacterales|f__Arcobacteraceae|g__Arcobacter k__Bacteria|p__Pseudomonadota|c__Gammaproteobacteria|o__Moraxellales|f__Moraxellaceae|g__Acinetobacter k__Bacteria|p__Pseudomonadota|c__Gammaproteobacteria|o__Aeromonadales|f__Aeromonadaceae|g__Aeromonas -bsdb:1048/157/1_Microbiome:Unspiked-sewage-samples-(S1)-at-64-hours-(5°C)_vs_Unspiked-sewage-samples-(S1)-at-16-hours-(-80°C)_UP NA k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Tannerellaceae|g__Parabacteroides -bsdb:1048/157/2_Microbiome:Unspiked-sewage-samples-(S1)-at-64-hours-(5°C)_vs_Unspiked-sewage-samples-(S1)-at-16-hours-(-80°C)_DOWN NA k__Bacteria|p__Campylobacterota|c__Epsilonproteobacteria|o__Campylobacterales|f__Arcobacteraceae|g__Arcobacter k__Bacteria|p__Pseudomonadota|c__Gammaproteobacteria|o__Moraxellales|f__Moraxellaceae|g__Acinetobacter k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella k__Bacteria|p__Pseudomonadota|c__Gammaproteobacteria|o__Aeromonadales|f__Aeromonadaceae|g__Aeromonas -bsdb:1048/158/1_Microbiome:Unspiked-sewage-samples-(S1)-at-16-hours-(22°C)_vs_Unspiked-sewage-samples-(S1)-at-16-hours-(-80°C)_UP NA k__Bacteria|p__Pseudomonadota|c__Gammaproteobacteria|o__Moraxellales|f__Moraxellaceae|g__Acinetobacter k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Tannerellaceae|g__Parabacteroides k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella -bsdb:1048/158/2_Microbiome:Unspiked-sewage-samples-(S1)-at-16-hours-(22°C)_vs_Unspiked-sewage-samples-(S1)-at-16-hours-(-80°C)_DOWN NA k__Bacteria|p__Campylobacterota|c__Epsilonproteobacteria|o__Campylobacterales|f__Arcobacteraceae|g__Arcobacter k__Bacteria|p__Pseudomonadota|c__Gammaproteobacteria|o__Aeromonadales|f__Aeromonadaceae|g__Aeromonas -bsdb:1048/159/1_Microbiome:Unspiked-sewage-samples-(S1)-at-64-hours-(22°C)_vs_Unspiked-sewage-samples-(S1)-at-16-hours-(-80°C)_UP NA k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella k__Bacteria|p__Pseudomonadota|c__Gammaproteobacteria|o__Aeromonadales|f__Aeromonadaceae|g__Aeromonas -bsdb:1048/159/2_Microbiome:Unspiked-sewage-samples-(S1)-at-64-hours-(22°C)_vs_Unspiked-sewage-samples-(S1)-at-16-hours-(-80°C)_DOWN NA k__Bacteria|p__Campylobacterota|c__Epsilonproteobacteria|o__Campylobacterales|f__Arcobacteraceae|g__Arcobacter k__Bacteria|p__Pseudomonadota|c__Gammaproteobacteria|o__Moraxellales|f__Moraxellaceae|g__Acinetobacter k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Tannerellaceae|g__Parabacteroides -bsdb:1048/160/1_Microbiome:Unspiked-sewage-samples-(S1)-at-16-hours-(-20°C)_vs_Unspiked-sewage-samples-(S1)-at-64-hours-(-80°C)_UP NA k__Bacteria|p__Campylobacterota|c__Epsilonproteobacteria|o__Campylobacterales|f__Arcobacteraceae|g__Arcobacter k__Bacteria|p__Pseudomonadota|c__Gammaproteobacteria|o__Moraxellales|f__Moraxellaceae|g__Acinetobacter k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Tannerellaceae|g__Parabacteroides k__Bacteria|p__Pseudomonadota|c__Gammaproteobacteria|o__Aeromonadales|f__Aeromonadaceae|g__Aeromonas -bsdb:1048/160/2_Microbiome:Unspiked-sewage-samples-(S1)-at-16-hours-(-20°C)_vs_Unspiked-sewage-samples-(S1)-at-64-hours-(-80°C)_DOWN NA k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella -bsdb:1048/161/1_Microbiome:Unspiked-sewage-samples-(S1)-at-64-hours-(-20°C)_vs_Unspiked-sewage-samples-(S1)-at-64-hours-(-80°C)_UP NA k__Bacteria|p__Campylobacterota|c__Epsilonproteobacteria|o__Campylobacterales|f__Arcobacteraceae|g__Arcobacter k__Bacteria|p__Pseudomonadota|c__Gammaproteobacteria|o__Moraxellales|f__Moraxellaceae|g__Acinetobacter k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Tannerellaceae|g__Parabacteroides k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella -bsdb:1048/161/2_Microbiome:Unspiked-sewage-samples-(S1)-at-64-hours-(-20°C)_vs_Unspiked-sewage-samples-(S1)-at-64-hours-(-80°C)_DOWN NA k__Bacteria|p__Pseudomonadota|c__Gammaproteobacteria|o__Aeromonadales|f__Aeromonadaceae|g__Aeromonas -bsdb:1048/162/1_Microbiome:Unspiked-sewage-samples-(S1)-at-16-hours-(5°C)_vs_Unspiked-sewage-samples-(S1)-at-64-hours-(-80°C)_UP NA k__Bacteria|p__Campylobacterota|c__Epsilonproteobacteria|o__Campylobacterales|f__Arcobacteraceae|g__Arcobacter k__Bacteria|p__Pseudomonadota|c__Gammaproteobacteria|o__Moraxellales|f__Moraxellaceae|g__Acinetobacter k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Tannerellaceae|g__Parabacteroides k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella -bsdb:1048/162/2_Microbiome:Unspiked-sewage-samples-(S1)-at-16-hours-(5°C)_vs_Unspiked-sewage-samples-(S1)-at-64-hours-(-80°C)_DOWN NA k__Bacteria|p__Pseudomonadota|c__Gammaproteobacteria|o__Aeromonadales|f__Aeromonadaceae|g__Aeromonas -bsdb:1048/207/1_Microbiome:Unspiked-sewage-samples-(S2)-at-16-hours-(5°C)_vs_Unspiked-sewage-samples-(S2)-at-64-hours-(-20°C)_UP NA k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Tannerellaceae|g__Parabacteroides -bsdb:1048/207/2_Microbiome:Unspiked-sewage-samples-(S2)-at-16-hours-(5°C)_vs_Unspiked-sewage-samples-(S2)-at-64-hours-(-20°C)_DOWN NA k__Bacteria|p__Campylobacterota|c__Epsilonproteobacteria|o__Campylobacterales|f__Arcobacteraceae|g__Arcobacter k__Bacteria|p__Pseudomonadota|c__Gammaproteobacteria|o__Moraxellales|f__Moraxellaceae|g__Acinetobacter k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella k__Bacteria|p__Pseudomonadota|c__Gammaproteobacteria|o__Aeromonadales|f__Aeromonadaceae|g__Aeromonas bsdb:1049/1/2_Atopic-eczema:cADtreat-dogs_vs_Healthy-dogs_DOWN NA k__Bacteria|k__Bacillati|p__Actinomycetota|c__Actinomycetes|o__Micrococcales|f__Micrococcaceae|g__Arthrobacter k__Bacteria|k__Bacillati|p__Actinomycetota|c__Actinomycetes|o__Mycobacteriales|f__Corynebacteriaceae|g__Corynebacterium bsdb:1049/2/1_Atopic-eczema:cADpost-dogs_vs_cADpre-dogs_DOWN NA k__Bacteria|k__Bacillati|p__Actinomycetota|c__Actinomycetes|o__Micrococcales|f__Micrococcaceae|g__Arthrobacter k__Bacteria|k__Bacillati|p__Bacillota|c__Bacilli|o__Bacillales|f__Bacillaceae|g__Bacillus k__Bacteria|k__Thermotogati|p__Deinococcota|c__Deinococci|o__Deinococcales|f__Deinococcaceae|g__Deinococcus k__Bacteria|k__Pseudomonadati|p__Pseudomonadota|c__Gammaproteobacteria|o__Pseudomonadales|f__Pseudomonadaceae|g__Pseudomonas k__Bacteria|k__Pseudomonadati|p__Pseudomonadota|c__Alphaproteobacteria|o__Rhodospirillales|f__Azospirillaceae|g__Skermanella bsdb:1049/2/2_Atopic-eczema:cADpost-dogs_vs_cADpre-dogs_UP NA k__Bacteria|k__Bacillati|p__Actinomycetota|c__Actinomycetes|o__Mycobacteriales|f__Corynebacteriaceae|g__Corynebacterium k__Bacteria|k__Bacillati|p__Actinomycetota|c__Actinomycetes|o__Propionibacteriales|f__Propionibacteriaceae|g__Cutibacterium k__Bacteria|k__Pseudomonadati|p__Pseudomonadota|c__Alphaproteobacteria|o__Hyphomicrobiales|f__Methylobacteriaceae|g__Methylobacterium k__Bacteria|k__Bacillati|p__Actinomycetota|c__Actinomycetes|o__Propionibacteriales|f__Nocardioidaceae|g__Nocardioides k__Bacteria|k__Pseudomonadati|p__Pseudomonadota|c__Alphaproteobacteria|o__Rhodobacterales|f__Paracoccaceae|g__Paracoccus k__Bacteria|k__Pseudomonadati|p__Pseudomonadota|c__Alphaproteobacteria|o__Acetobacterales|f__Roseomonadaceae|g__Roseomonas k__Bacteria|k__Pseudomonadati|p__Pseudomonadota|c__Alphaproteobacteria|o__Rhodobacterales|f__Roseobacteraceae|g__Rubellimicrobium k__Bacteria|k__Pseudomonadati|p__Pseudomonadota|c__Alphaproteobacteria|o__Sphingomonadales|f__Sphingomonadaceae|g__Sphingomonas k__Bacteria|k__Bacillati|p__Bacillota|c__Bacilli|o__Bacillales|f__Staphylococcaceae|g__Staphylococcus k__Bacteria|k__Bacillati|p__Bacillota|c__Bacilli|o__Lactobacillales|f__Streptococcaceae|g__Streptococcus @@ -3610,26 +3454,6 @@ bsdb:1049/41/2_Atopic-eczema:cADpost-dogs_vs_cADpre-dogs_UP NA k__Bacteria|k__Ps bsdb:1049/43/1_Atopic-eczema:cADpre-dogs_vs_Healthy-dogs_UP NA k__Bacteria|k__Bacillati|p__Bacillota|c__Bacilli|o__Bacillales|f__Staphylococcaceae|g__Staphylococcus bsdb:1049/44/1_Atopic-eczema:cADtreat-dogs_vs_Healthy-dogs_DOWN NA k__Bacteria|k__Pseudomonadati|p__Pseudomonadota|c__Gammaproteobacteria|o__Moraxellales|f__Moraxellaceae|g__Moraxella bsdb:1049/44/2_Atopic-eczema:cADtreat-dogs_vs_Healthy-dogs_UP NA k__Bacteria|k__Pseudomonadati|p__Pseudomonadota|c__Betaproteobacteria|o__Burkholderiales|f__Burkholderiaceae|g__Lautropia -bsdb:1049/47/1_Atopic-eczema:cADpre-dogs_vs_Healthy-dogs_UP NA k__Bacteria|k__Bacillati|p__Bacillota|c__Bacilli|o__Bacillales|f__Staphylococcaceae|g__Staphylococcus -bsdb:1049/48/1_Atopic-eczema:cADpost-dogs_vs_cADpre-dogs_DOWN NA k__Bacteria|k__Bacillati|p__Bacillota|c__Bacilli|o__Bacillales|f__Staphylococcaceae|g__Staphylococcus -bsdb:1049/49/1_Atopic-eczema:cADpre-dogs_vs_Healthy-dogs_UP NA k__Bacteria|k__Bacillati|p__Bacillota|c__Bacilli|o__Bacillales|f__Staphylococcaceae|g__Staphylococcus -bsdb:1049/50/1_Atopic-eczema:cADpre-dogs_vs_Healthy-dogs_UP NA k__Bacteria|k__Bacillati|p__Bacillota|c__Bacilli|o__Bacillales|f__Staphylococcaceae|g__Staphylococcus -bsdb:1049/51/1_Atopic-eczema:cADpost-dogs_vs_cADpre-dogs_DOWN NA k__Bacteria|k__Bacillati|p__Bacillota|c__Bacilli|o__Bacillales|f__Staphylococcaceae|g__Staphylococcus -bsdb:1049/52/1_Atopic-eczema:cADtreat-dogs_vs_cADpre-dogs_DOWN NA k__Bacteria|k__Bacillati|p__Bacillota|c__Bacilli|o__Bacillales|f__Staphylococcaceae|g__Staphylococcus -bsdb:1049/53/1_Atopic-eczema:cADpre-dogs_vs_Healthy-dogs_UP NA k__Bacteria|k__Bacillati|p__Bacillota|c__Bacilli|o__Bacillales|f__Staphylococcaceae|g__Staphylococcus -bsdb:1049/54/1_Atopic-eczema:cADpre-dogs_vs_Healthy-dogs_UP NA k__Bacteria|k__Bacillati|p__Bacillota|c__Bacilli|o__Bacillales|f__Staphylococcaceae|g__Staphylococcus -bsdb:1049/55/1_Atopic-eczema:cADpost-dogs_vs_cADpre-dogs_DOWN NA k__Bacteria|k__Bacillati|p__Bacillota|c__Bacilli|o__Bacillales|f__Staphylococcaceae|g__Staphylococcus -bsdb:1049/56/1_Atopic-eczema:cADtreat-dogs_vs_cADpre-dogs_DOWN NA k__Bacteria|k__Bacillati|p__Bacillota|c__Bacilli|o__Bacillales|f__Staphylococcaceae|g__Staphylococcus -bsdb:1049/57/1_Atopic-eczema:cADpre-dogs_vs_Healthy-dogs_UP NA k__Bacteria|k__Bacillati|p__Bacillota|c__Bacilli|o__Bacillales|f__Staphylococcaceae|g__Staphylococcus -bsdb:1049/58/1_Atopic-eczema:cADpost-dogs_vs_cADpre-dogs_DOWN NA k__Bacteria|k__Bacillati|p__Bacillota|c__Bacilli|o__Bacillales|f__Staphylococcaceae|g__Staphylococcus -bsdb:1049/59/1_Atopic-eczema:Mitochondrial-haplogroups-C_vs_Mitochondrial-haplogroups-A_DOWN NA k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Anaerostipes k__Bacteria|k__Bacillati|p__Bacillota|c__Bacilli|o__Lactobacillales|f__Streptococcaceae|g__Streptococcus k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Anaerotignaceae|g__Anaerotignum k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Blautia k__Bacteria|k__Bacillati|p__Bacillota|c__Erysipelotrichia|o__Erysipelotrichales|f__Erysipelotrichaceae|g__Amedibacterium -bsdb:1049/60/1_Atopic-eczema:Mitochondrial-haplogroups-C_vs_Mitochondrial-haplogroups-A_DOWN NA k__Bacteria|k__Bacillati|p__Actinomycetota|c__Actinomycetes|o__Micrococcales|f__Micrococcaceae|g__Arthrobacter k__Bacteria|k__Pseudomonadati|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Bacteroidaceae|g__Bacteroides -bsdb:1049/61/2_Atopic-eczema:Mitochondrial-haplogroups-C_vs_Mitochondrial-haplogroups-A_DOWN NA k__Bacteria|k__Pseudomonadati|p__Pseudomonadota|c__Alphaproteobacteria|o__Rhodobacterales|f__Roseobacteraceae|g__Rubellimicrobium k__Bacteria|k__Pseudomonadati|p__Pseudomonadota|c__Gammaproteobacteria|o__Pasteurellales|f__Pasteurellaceae|g__Haemophilus -bsdb:1049/62/1_Atopic-eczema:Mitochondrial-haplogroups-C_vs_Mitochondrial-haplogroups-A_UP NA k__Bacteria|k__Bacillati|p__Actinomycetota|c__Actinomycetes|o__Micrococcales|f__Micrococcaceae|g__Rothia k__Bacteria|k__Pseudomonadati|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Tannerellaceae|g__Tannerella k__Bacteria|k__Pseudomonadati|p__Pseudomonadota|c__Gammaproteobacteria|o__Lysobacterales|f__Lysobacteraceae|g__Stenotrophomonas -bsdb:1049/62/2_Atopic-eczema:Mitochondrial-haplogroups-C_vs_Mitochondrial-haplogroups-A_DOWN NA k__Bacteria|k__Pseudomonadati|p__Bacteroidota|c__Flavobacteriia|o__Flavobacteriales|f__Flavobacteriaceae|g__Flavobacterium k__Bacteria|k__Pseudomonadati|p__Pseudomonadota|c__Gammaproteobacteria|o__Pasteurellales|f__Pasteurellaceae|g__Pasteurella -bsdb:1049/63/1_Atopic-eczema:Mitochondrial-haplogroups-C_vs_Mitochondrial-haplogroups-A_DOWN NA k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Roseburia -bsdb:1049/64/1_Atopic-eczema:Mitochondrial-haplogroups-C_vs_Mitochondrial-haplogroups-A_UP NA k__Bacteria|k__Pseudomonadati|p__Pseudomonadota|c__Gammaproteobacteria|o__Pasteurellales|f__Pasteurellaceae|g__Haemophilus -bsdb:1049/64/2_Atopic-eczema:Mitochondrial-haplogroups-C_vs_Mitochondrial-haplogroups-A_DOWN NA k__Bacteria|k__Pseudomonadati|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Bacteroidaceae|g__Bacteroides k__Bacteria|k__Pseudomonadati|p__Bacteroidota|c__Flavobacteriia|o__Flavobacteriales|f__Flavobacteriaceae|g__Capnocytophaga k__Bacteria|k__Pseudomonadati|p__Pseudomonadota|c__Betaproteobacteria|o__Neisseriales|f__Neisseriaceae|g__Neisseria bsdb:1050/1/1_Taxonomic-microbiome-measurement:Esophagus_vs_Oral-cavity_UP NA k__Bacteria|p__Pseudomonadota|c__Gammaproteobacteria|o__Moraxellales|f__Moraxellaceae|g__Acinetobacter k__Bacteria|p__Pseudomonadota|c__Gammaproteobacteria|o__Pasteurellales|f__Pasteurellaceae|g__Actinobacillus k__Bacteria|p__Bacillota|c__Erysipelotrichia|o__Erysipelotrichales|f__Erysipelotrichaceae|g__Allobaculum k__Bacteria|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Blautia k__Bacteria|p__Pseudomonadota|c__Alphaproteobacteria|o__Hyphomicrobiales|f__Nitrobacteraceae|g__Bradyrhizobium k__Bacteria|p__Bacteroidota|c__Flavobacteriia|o__Flavobacteriales|f__Weeksellaceae|g__Chryseobacterium k__Bacteria|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Coprococcus k__Bacteria|p__Pseudomonadota|c__Alphaproteobacteria|o__Hyphomicrobiales|g__Enhydrobacter k__Bacteria|p__Pseudomonadota|c__Alphaproteobacteria|o__Hyphomicrobiales|f__Methylobacteriaceae|g__Methylobacterium k__Bacteria|p__Pseudomonadota|c__Alphaproteobacteria|o__Sphingomonadales|f__Sphingomonadaceae|g__Novosphingobium k__Bacteria|p__Pseudomonadota|c__Alphaproteobacteria|o__Hyphomicrobiales|f__Brucellaceae|g__Ochrobactrum k__Bacteria|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Oscillospira k__Bacteria|p__Pseudomonadota|c__Alphaproteobacteria|o__Caulobacterales|f__Caulobacteraceae|g__Phenylobacterium k__Bacteria|p__Actinomycetota|c__Actinomycetes|o__Propionibacteriales|f__Propionibacteriaceae|g__Propionibacterium k__Bacteria|p__Pseudomonadota|c__Gammaproteobacteria|o__Pseudomonadales|f__Pseudomonadaceae|g__Pseudomonas k__Bacteria|p__Pseudomonadota|c__Betaproteobacteria|o__Burkholderiales|f__Burkholderiaceae|g__Ralstonia k__Bacteria|p__Bacteroidota|c__Saprospiria|o__Saprospirales|f__Saprospiraceae|g__Saprospira k__Bacteria|p__Bacteroidota|c__Chitinophagia|o__Chitinophagales|f__Chitinophagaceae|g__Sediminibacterium k__Bacteria|p__Pseudomonadota|c__Alphaproteobacteria|o__Sphingomonadales|f__Sphingomonadaceae|g__Sphingobium k__Bacteria|p__Pseudomonadota|c__Alphaproteobacteria|o__Sphingomonadales|f__Sphingomonadaceae|g__Sphingomonas k__Bacteria|p__Bacillota|c__Bacilli|o__Bacillales|f__Staphylococcaceae|g__Staphylococcus k__Bacteria|p__Pseudomonadota|c__Gammaproteobacteria|o__Lysobacterales|f__Lysobacteraceae|g__Stenotrophomonas k__Bacteria|p__Bacillota|c__Bacilli|o__Lactobacillales|f__Streptococcaceae|g__Streptococcus bsdb:1050/1/2_Taxonomic-microbiome-measurement:Esophagus_vs_Oral-cavity_DOWN NA k__Bacteria|p__Actinomycetota|c__Actinomycetes|o__Actinomycetales|f__Actinomycetaceae|g__Actinomyces k__Bacteria|p__Pseudomonadota|c__Gammaproteobacteria|o__Cardiobacteriales|f__Cardiobacteriaceae|g__Cardiobacterium k__Bacteria|p__Pseudomonadota|c__Betaproteobacteria|o__Neisseriales|f__Neisseriaceae|g__Neisseria k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Paludibacteraceae|g__Paludibacter k__Bacteria|p__Bacillota|c__Negativicutes|o__Selenomonadales|f__Selenomonadaceae|g__Selenomonas bsdb:1051/1/1_Lung-cancer:Lung-cancer-(L-group)_vs_Benign-pulmonary-diseases-(N-group)_UP NA k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Bacteroidaceae|g__Bacteroides diff --git a/bugsigdb_signatures_genus_ncbi.gmt b/bugsigdb_signatures_genus_ncbi.gmt index 4424cea5f..843c4d765 100644 --- a/bugsigdb_signatures_genus_ncbi.gmt +++ b/bugsigdb_signatures_genus_ncbi.gmt @@ -1,4 +1,4 @@ -# BugSigDB 2025-01-25_15:58_UTC, License: Creative Commons Attribution 4.0 International, URL: https://bugsigdb.org +# BugSigDB 2025-01-26_10:58_UTC, License: Creative Commons Attribution 4.0 International, URL: https://bugsigdb.org bsdb:1/1/1_Colorectal-adenoma:conventional-adenoma-cases_vs_controls_UP NA 1654 1716 1301 162289 189330 33024 40544 2759736 1386 bsdb:1/1/2_Colorectal-adenoma:conventional-adenoma-cases_vs_controls_DOWN NA 100883 bsdb:1/2/1_Hyperplastic-Polyp:hyperplastic-polyp-cases_vs_controls_UP NA 207244 2759736 @@ -4111,162 +4111,6 @@ bsdb:1048/44/1_Microbiome:Unspiked-pig-feces(P1)-at-16-hours-(5°C)_vs_Unspiked- bsdb:1048/44/2_Microbiome:Unspiked-pig-feces(P1)-at-16-hours-(5°C)_vs_Unspiked-pig-feces(P1)-at-16-hours-(-80°C)_DOWN NA 838 33024 bsdb:1048/45/1_Microbiome:Unspiked-pig-feces(P1)-at-64-hours-(5°C)_vs_Unspiked-pig-feces(P1)-at-16-hours-(-80°C)_UP NA 157 216851 33024 841 bsdb:1048/45/2_Microbiome:Unspiked-pig-feces(P1)-at-64-hours-(5°C)_vs_Unspiked-pig-feces(P1)-at-16-hours-(-80°C)_DOWN NA 838 -bsdb:1048/46/1_Microbiome:Unspiked-pig-feces(P1)-at-16-hours-(22°C)_vs_Unspiked-pig-feces(P1)-at-16-hours-(-80°C)_UP NA 157 216851 841 -bsdb:1048/46/2_Microbiome:Unspiked-pig-feces(P1)-at-16-hours-(22°C)_vs_Unspiked-pig-feces(P1)-at-16-hours-(-80°C)_DOWN NA 838 33024 -bsdb:1048/47/1_Microbiome:Unspiked-pig-feces(P1)-at-64-hours-(22°C)_vs_Unspiked-pig-feces(P1)-at-16-hours-(-80°C)_UP NA 157 216851 -bsdb:1048/47/2_Microbiome:Unspiked-pig-feces(P1)-at-64-hours-(22°C)_vs_Unspiked-pig-feces(P1)-at-16-hours-(-80°C)_DOWN NA 838 -bsdb:1048/48/1_Microbiome:Unspiked-pig-feces(P1)-at-16-hours-(-20°C)_vs_Unspiked-pig-feces(P1)-at-64-hours-(-80°C)_UP NA 216851 841 -bsdb:1048/48/2_Microbiome:Unspiked-pig-feces(P1)-at-16-hours-(-20°C)_vs_Unspiked-pig-feces(P1)-at-64-hours-(-80°C)_DOWN NA 838 157 33024 -bsdb:1048/49/1_Microbiome:Unspiked-pig-feces(P1)-at-64-hours-(-20°C)_vs_Unspiked-pig-feces(P1)-at-64-hours-(-80°C)_UP NA 157 216851 841 -bsdb:1048/49/2_Microbiome:Unspiked-pig-feces(P1)-at-64-hours-(-20°C)_vs_Unspiked-pig-feces(P1)-at-64-hours-(-80°C)_DOWN NA 838 33024 -bsdb:1048/50/1_Microbiome:Unspiked-pig-feces(P1)-at-16-hours-(5°C)_vs_Unspiked-pig-feces(P1)-at-64-hours-(-80°C)_UP NA 157 216851 841 -bsdb:1048/50/2_Microbiome:Unspiked-pig-feces(P1)-at-16-hours-(5°C)_vs_Unspiked-pig-feces(P1)-at-64-hours-(-80°C)_DOWN NA 838 33024 -bsdb:1048/51/1_Microbiome:Unspiked-pig-feces(P1)-at-64-hours-(5°C)_vs_Unspiked-pig-feces(P1)-at-64-hours-(-80°C)_UP NA 216851 841 -bsdb:1048/51/2_Microbiome:Unspiked-pig-feces(P1)-at-64-hours-(5°C)_vs_Unspiked-pig-feces(P1)-at-64-hours-(-80°C)_DOWN NA 838 157 33024 -bsdb:1048/52/1_Microbiome:Unspiked-pig-feces(P1)-at-16-hours-(22°C)_vs_Unspiked-pig-feces(P1)-at-64-hours-(-80°C)_UP NA 157 216851 33024 841 -bsdb:1048/52/2_Microbiome:Unspiked-pig-feces(P1)-at-16-hours-(22°C)_vs_Unspiked-pig-feces(P1)-at-64-hours-(-80°C)_DOWN NA 838 -bsdb:1048/53/1_Microbiome:Unspiked-pig-feces(P1)-at-64-hours-(22°C)_vs_Unspiked-pig-feces(P1)-at-64-hours-(-80°C)_UP NA 157 216851 33024 841 -bsdb:1048/53/2_Microbiome:Unspiked-pig-feces(P1)-at-64-hours-(22°C)_vs_Unspiked-pig-feces(P1)-at-64-hours-(-80°C)_DOWN NA 838 -bsdb:1048/54/1_Microbiome:Unspiked-pig-feces(P1)-at-64-hours-(-20°C)_vs_Unspiked-pig-feces(P1)-at-16-hours-(-20°C)_UP NA 157 -bsdb:1048/54/2_Microbiome:Unspiked-pig-feces(P1)-at-64-hours-(-20°C)_vs_Unspiked-pig-feces(P1)-at-16-hours-(-20°C)_DOWN NA 838 33024 216851 841 -bsdb:1048/55/1_Microbiome:Unspiked-pig-feces(P1)-at-16-hours-(5°C)_vs_Unspiked-pig-feces(P1)-at-16-hours-(-20°C)_UP NA 157 216851 841 -bsdb:1048/55/2_Microbiome:Unspiked-pig-feces(P1)-at-16-hours-(5°C)_vs_Unspiked-pig-feces(P1)-at-16-hours-(-20°C)_DOWN NA 838 33024 -bsdb:1048/56/1_Microbiome:Unspiked-pig-feces(P1)-at-64-hours-(5°C)_vs_Unspiked-pig-feces(P1)-at-16-hours-(-20°C)_UP NA 157 216851 33024 841 -bsdb:1048/56/2_Microbiome:Unspiked-pig-feces(P1)-at-64-hours-(5°C)_vs_Unspiked-pig-feces(P1)-at-16-hours-(-20°C)_DOWN NA 838 -bsdb:1048/57/1_Microbiome:Unspiked-pig-feces(P1)-at-16-hours-(22°C)_vs_Unspiked-pig-feces(P1)-at-16-hours-(-20°C)_UP NA 157 216851 33024 841 -bsdb:1048/57/2_Microbiome:Unspiked-pig-feces(P1)-at-16-hours-(22°C)_vs_Unspiked-pig-feces(P1)-at-16-hours-(-20°C)_DOWN NA 838 -bsdb:1048/58/1_Microbiome:Unspiked-pig-feces(P1)-at-64-hours-(22°C)_vs_Unspiked-pig-feces(P1)-at-16-hours-(-20°C)_UP NA 157 216851 33024 841 -bsdb:1048/58/2_Microbiome:Unspiked-pig-feces(P1)-at-64-hours-(22°C)_vs_Unspiked-pig-feces(P1)-at-16-hours-(-20°C)_DOWN NA 838 -bsdb:1048/62/1_Microbiome:Unspiked-pig-feces(P1)-at-16-hours-(5°C)_vs_Unspiked-pig-feces(P1)-at-64-hours-(-20°C)_UP NA 157 216851 -bsdb:1048/62/2_Microbiome:Unspiked-pig-feces(P1)-at-16-hours-(5°C)_vs_Unspiked-pig-feces(P1)-at-64-hours-(-20°C)_DOWN NA 838 33024 841 -bsdb:1048/64/1_Microbiome:Unspiked-pig-feces(P1)-at-64-hours-(5°C)_vs_Unspiked-pig-feces(P1)-at-64-hours-(-20°C)_UP NA 216851 33024 841 -bsdb:1048/64/2_Microbiome:Unspiked-pig-feces(P1)-at-64-hours-(5°C)_vs_Unspiked-pig-feces(P1)-at-64-hours-(-20°C)_DOWN NA 838 157 -bsdb:1048/65/1_Microbiome:Unspiked-pig-feces(P1)-at-16-hours-(22°C)_vs_Unspiked-pig-feces(P1)-at-64-hours-(-20°C)_UP NA 157 216851 33024 841 -bsdb:1048/65/2_Microbiome:Unspiked-pig-feces(P1)-at-16-hours-(22°C)_vs_Unspiked-pig-feces(P1)-at-64-hours-(-20°C)_DOWN NA 838 -bsdb:1048/66/1_Microbiome:Unspiked-pig-feces(P1)-at-64-hours-(22°C)_vs_Unspiked-pig-feces(P1)-at-64-hours-(-20°C)_UP NA 157 33024 216851 841 -bsdb:1048/66/2_Microbiome:Unspiked-pig-feces(P1)-at-64-hours-(22°C)_vs_Unspiked-pig-feces(P1)-at-64-hours-(-20°C)_DOWN NA 838 -bsdb:1048/67/1_Microbiome:Unspiked-pig-feces(P1)-at-64-hours-(5°C)_vs_Unspiked-pig-feces(P1)-at-16-hours-(5°C)_UP NA 157 216851 841 -bsdb:1048/67/2_Microbiome:Unspiked-pig-feces(P1)-at-64-hours-(5°C)_vs_Unspiked-pig-feces(P1)-at-16-hours-(5°C)_DOWN NA 838 33024 -bsdb:1048/68/1_Microbiome:Unspiked-pig-feces(P1)-at-16-hours-(22°C)_vs_Unspiked-pig-feces(P1)-at-16-hours-(5°C)_UP NA 157 216851 33024 841 -bsdb:1048/68/2_Microbiome:Unspiked-pig-feces(P1)-at-16-hours-(22°C)_vs_Unspiked-pig-feces(P1)-at-16-hours-(5°C)_DOWN NA 838 -bsdb:1048/69/1_Microbiome:Unspiked-pig-feces(P1)-at-64-hours-(22°C)_vs_Unspiked-pig-feces(P1)-at-16-hours-(5°C)_UP NA 216851 33024 841 -bsdb:1048/69/2_Microbiome:Unspiked-pig-feces(P1)-at-64-hours-(22°C)_vs_Unspiked-pig-feces(P1)-at-16-hours-(5°C)_DOWN NA 838 157 -bsdb:1048/70/1_Microbiome:Unspiked-pig-feces(P1)-at-16-hours-(22°C)_vs_Unspiked-pig-feces(P1)-at-64-hours-(5°C)_UP NA 157 216851 -bsdb:1048/70/2_Microbiome:Unspiked-pig-feces(P1)-at-16-hours-(22°C)_vs_Unspiked-pig-feces(P1)-at-64-hours-(5°C)_DOWN NA 838 33024 841 -bsdb:1048/71/1_Microbiome:Unspiked-pig-feces(P1)-at-64-hours-(22°C)_vs_Unspiked-pig-feces(P1)-at-64-hours-(5°C)_UP NA 157 216851 -bsdb:1048/71/2_Microbiome:Unspiked-pig-feces(P1)-at-64-hours-(22°C)_vs_Unspiked-pig-feces(P1)-at-64-hours-(5°C)_DOWN NA 838 33024 841 -bsdb:1048/72/1_Microbiome:Unspiked-pig-feces(P1)-at-64-hours-(22°C)_vs_Unspiked-pig-feces(P1)-at-16-hours-(22°C)_UP NA 157 216851 -bsdb:1048/72/2_Microbiome:Unspiked-pig-feces(P1)-at-64-hours-(22°C)_vs_Unspiked-pig-feces(P1)-at-16-hours-(22°C)_DOWN NA 838 33024 841 -bsdb:1048/109/1_Microbiome:Unspiked-pig-feces(P2)-at-16-hours-(-80°C)_vs_Unspiked-pig-feces(P2)-at-0-hour_UP NA 33024 838 841 -bsdb:1048/109/2_Microbiome:Unspiked-pig-feces(P2)-at-16-hours-(-80°C)_vs_Unspiked-pig-feces(P2)-at-0-hour_DOWN NA 216851 157 -bsdb:1048/110/1_Microbiome:Unspiked-pig-feces(P2)-at-64-hours-(-80°C)_vs_Unspiked-pig-feces(P2)-at-0-hour_UP NA 838 -bsdb:1048/110/2_Microbiome:Unspiked-pig-feces(P2)-at-64-hours-(-80°C)_vs_Unspiked-pig-feces(P2)-at-0-hour_DOWN NA 216851 33024 841 157 -bsdb:1048/111/1_Microbiome:Unspiked-pig-feces(P2)-at-16-hours-(-20°C)_vs_Unspiked-pig-feces(P2)-at-0-hour_UP NA 838 33024 841 -bsdb:1048/111/2_Microbiome:Unspiked-pig-feces(P2)-at-16-hours-(-20°C)_vs_Unspiked-pig-feces(P2)-at-0-hour_DOWN NA 157 216851 -bsdb:1048/112/1_Microbiome:Unspiked-pig-feces(P2)-at-64-hours-(-20°C)_vs_Unspiked-pig-feces(P2)-at-0-hour_UP NA 838 33024 -bsdb:1048/112/2_Microbiome:Unspiked-pig-feces(P2)-at-64-hours-(-20°C)_vs_Unspiked-pig-feces(P2)-at-0-hour_DOWN NA 157 216851 841 -bsdb:1048/113/1_Microbiome:Unspiked-pig-feces(P2)-at-16-hours-(5°C)_vs_Unspiked-pig-feces(P2)-at-0-hour_UP NA 216851 33024 841 -bsdb:1048/113/2_Microbiome:Unspiked-pig-feces(P2)-at-16-hours-(5°C)_vs_Unspiked-pig-feces(P2)-at-0-hour_DOWN NA 838 157 -bsdb:1048/114/1_Microbiome:Unspiked-pig-feces(P2)-at-64-hours-(5°C)_vs_Unspiked-pig-feces(P2)-at-0-hour_UP NA 216851 33024 841 -bsdb:1048/114/2_Microbiome:Unspiked-pig-feces(P2)-at-64-hours-(5°C)_vs_Unspiked-pig-feces(P2)-at-0-hour_DOWN NA 838 157 -bsdb:1048/115/1_Microbiome:Unspiked-pig-feces(P2)-at-16-hours-(22°C)_vs_Unspiked-pig-feces(P2)-at-0-hour_UP NA 216851 33024 841 -bsdb:1048/115/2_Microbiome:Unspiked-pig-feces(P2)-at-16-hours-(22°C)_vs_Unspiked-pig-feces(P2)-at-0-hour_DOWN NA 838 157 -bsdb:1048/116/1_Microbiome:Unspiked-pig-feces(P2)-at-64-hours-(22°C)_vs_Unspiked-pig-feces(P2)-at-0-hour_UP NA 216851 33024 841 -bsdb:1048/116/2_Microbiome:Unspiked-pig-feces(P2)-at-64-hours-(22°C)_vs_Unspiked-pig-feces(P2)-at-0-hour_DOWN NA 838 157 -bsdb:1048/117/1_Microbiome:Unspiked-pig-feces(P2)-at-64-hours-(80°C)_vs_Unspiked-pig-feces(P2)-at-16-hours-(-80°C)_UP NA 216851 -bsdb:1048/117/2_Microbiome:Unspiked-pig-feces(P2)-at-64-hours-(80°C)_vs_Unspiked-pig-feces(P2)-at-16-hours-(-80°C)_DOWN NA 838 157 33024 841 -bsdb:1048/118/1_Microbiome:Unspiked-pig-feces(P2)-at-16-hours-(-20°C)_vs_Unspiked-pig-feces(P2)-at-16-hours-(-80°C)_UP NA 838 33024 -bsdb:1048/118/2_Microbiome:Unspiked-pig-feces(P2)-at-16-hours-(-20°C)_vs_Unspiked-pig-feces(P2)-at-16-hours-(-80°C)_DOWN NA 157 216851 841 -bsdb:1048/119/1_Microbiome:Unspiked-pig-feces(P2)-at-64-hours-(-20°C)_vs_Unspiked-pig-feces(P2)-at-16-hours-(-80°C)_UP NA 838 33024 -bsdb:1048/119/2_Microbiome:Unspiked-pig-feces(P2)-at-64-hours-(-20°C)_vs_Unspiked-pig-feces(P2)-at-16-hours-(-80°C)_DOWN NA 157 216851 841 -bsdb:1048/120/1_Microbiome:Unspiked-pig-feces(P2)-at-16-hours-(5°C)_vs_Unspiked-pig-feces(P2)-at-16-hours-(-80°C)_UP NA 157 216851 33024 841 -bsdb:1048/120/2_Microbiome:Unspiked-pig-feces(P2)-at-16-hours-(5°C)_vs_Unspiked-pig-feces(P2)-at-16-hours-(-80°C)_DOWN NA 838 -bsdb:1048/121/1_Microbiome:Unspiked-pig-feces(P2)-at-64-hours-(5°C)_vs_Unspiked-pig-feces(P2)-at-16-hours-(-80°C)_UP NA 157 216851 33024 841 -bsdb:1048/121/2_Microbiome:Unspiked-pig-feces(P2)-at-64-hours-(5°C)_vs_Unspiked-pig-feces(P2)-at-16-hours-(-80°C)_DOWN NA 838 -bsdb:1048/122/1_Microbiome:Unspiked-pig-feces(P2)-at-16-hours-(22°C)_vs_Unspiked-pig-feces(P2)-at-16-hours-(-80°C)_UP NA 157 216851 33024 841 -bsdb:1048/122/2_Microbiome:Unspiked-pig-feces(P2)-at-16-hours-(22°C)_vs_Unspiked-pig-feces(P2)-at-16-hours-(-80°C)_DOWN NA 838 -bsdb:1048/123/1_Microbiome:Unspiked-pig-feces(P2)-at-64-hours-(22°C)_vs_Unspiked-pig-feces(P2)-at-16-hours-(-80°C)_UP NA 157 216851 33024 841 -bsdb:1048/123/2_Microbiome:Unspiked-pig-feces(P2)-at-64-hours-(22°C)_vs_Unspiked-pig-feces(P2)-at-16-hours-(-80°C)_DOWN NA 838 -bsdb:1048/124/1_Microbiome:Unspiked-pig-feces(P2)-at-16-hours-(-20°C)_vs_Unspiked-pig-feces(P2)-at-64-hours-(-80°C)_UP NA 838 157 33024 841 -bsdb:1048/124/2_Microbiome:Unspiked-pig-feces(P2)-at-16-hours-(-20°C)_vs_Unspiked-pig-feces(P2)-at-64-hours-(-80°C)_DOWN NA 216851 -bsdb:1048/125/1_Microbiome:Unspiked-pig-feces(P2)-at-64-hours-(-20°C)_vs_Unspiked-pig-feces(P2)-at-64-hours-(-80°C)_UP NA 838 157 33024 -bsdb:1048/125/2_Microbiome:Unspiked-pig-feces(P2)-at-64-hours-(-20°C)_vs_Unspiked-pig-feces(P2)-at-64-hours-(-80°C)_DOWN NA 216851 841 -bsdb:1048/126/1_Microbiome:Unspiked-pig-feces(P2)-at-16-hours-(5°C)_vs_Unspiked-pig-feces(P2)-at-64-hours-(-80°C)_UP NA 157 216851 33024 841 -bsdb:1048/126/2_Microbiome:Unspiked-pig-feces(P2)-at-16-hours-(5°C)_vs_Unspiked-pig-feces(P2)-at-64-hours-(-80°C)_DOWN NA 838 -bsdb:1048/127/1_Microbiome:Unspiked-pig-feces(P2)-at-64-hours-(5°C)_vs_Unspiked-pig-feces(P2)-at-64-hours-(-80°C)_UP NA 216851 33024 841 157 -bsdb:1048/127/2_Microbiome:Unspiked-pig-feces(P2)-at-64-hours-(5°C)_vs_Unspiked-pig-feces(P2)-at-64-hours-(-80°C)_DOWN NA 838 -bsdb:1048/128/1_Microbiome:Unspiked-pig-feces(P2)-at-16-hours-(22°C)_vs_Unspiked-pig-feces(P2)-at-64-hours-(-80°C)_UP NA 157 216851 33024 841 -bsdb:1048/128/2_Microbiome:Unspiked-pig-feces(P2)-at-16-hours-(22°C)_vs_Unspiked-pig-feces(P2)-at-64-hours-(-80°C)_DOWN NA 838 -bsdb:1048/129/1_Microbiome:Unspiked-pig-feces(P2)-at-64-hours-(22°C)_vs_Unspiked-pig-feces(P2)-at-64-hours-(-80°C)_UP NA 216851 33024 157 841 -bsdb:1048/129/2_Microbiome:Unspiked-pig-feces(P2)-at-64-hours-(22°C)_vs_Unspiked-pig-feces(P2)-at-64-hours-(-80°C)_DOWN NA 838 -bsdb:1048/130/1_Microbiome:Unspiked-pig-feces(P2)-at-64-hours-(-20°C)_vs_Unspiked-pig-feces(P2)-at-16-hours-(-20°C)_UP NA 33024 -bsdb:1048/130/2_Microbiome:Unspiked-pig-feces(P2)-at-64-hours-(-20°C)_vs_Unspiked-pig-feces(P2)-at-16-hours-(-20°C)_DOWN NA 838 157 216851 841 -bsdb:1048/131/1_Microbiome:Unspiked-pig-feces(P2)-at-16-hours-(5°C)_vs_Unspiked-pig-feces(P2)-at-16-hours-(-20°C)_UP NA 157 216851 33024 841 -bsdb:1048/131/2_Microbiome:Unspiked-pig-feces(P2)-at-16-hours-(5°C)_vs_Unspiked-pig-feces(P2)-at-16-hours-(-20°C)_DOWN NA 838 -bsdb:1048/132/1_Microbiome:Unspiked-pig-feces(P2)-at-64-hours-(5°C)_vs_Unspiked-pig-feces(P2)-at-16-hours-(-20°C)_UP NA 157 216851 33024 841 -bsdb:1048/132/2_Microbiome:Unspiked-pig-feces(P2)-at-64-hours-(5°C)_vs_Unspiked-pig-feces(P2)-at-16-hours-(-20°C)_DOWN NA 838 -bsdb:1048/133/1_Microbiome:Unspiked-pig-feces(P2)-at-16-hours-(22°C)_vs_Unspiked-pig-feces(P2)-at-16-hours-(-20°C)_UP NA 157 216851 33024 841 -bsdb:1048/133/2_Microbiome:Unspiked-pig-feces(P2)-at-16-hours-(22°C)_vs_Unspiked-pig-feces(P2)-at-16-hours-(-20°C)_DOWN NA 838 -bsdb:1048/134/1_Microbiome:Unspiked-pig-feces(P2)-at-64-hours-(22°C)_vs_Unspiked-pig-feces(P2)-at-16-hours-(-20°C)_UP NA 157 216851 33024 841 -bsdb:1048/134/2_Microbiome:Unspiked-pig-feces(P2)-at-64-hours-(22°C)_vs_Unspiked-pig-feces(P2)-at-16-hours-(-20°C)_DOWN NA 838 -bsdb:1048/135/1_Microbiome:Unspiked-pig-feces(P2)-at-16-hours-(5°C)_vs_Unspiked-pig-feces(P2)-at-64-hours-(-20°C)_UP NA 157 216851 841 -bsdb:1048/135/2_Microbiome:Unspiked-pig-feces(P2)-at-16-hours-(5°C)_vs_Unspiked-pig-feces(P2)-at-64-hours-(-20°C)_DOWN NA 838 33024 -bsdb:1048/136/1_Microbiome:Unspiked-pig-feces(P2)-at-64-hours-(5°C)_vs_Unspiked-pig-feces(P2)-at-64-hours-(-20°C)_UP NA 157 216851 33024 841 -bsdb:1048/136/2_Microbiome:Unspiked-pig-feces(P2)-at-64-hours-(5°C)_vs_Unspiked-pig-feces(P2)-at-64-hours-(-20°C)_DOWN NA 838 -bsdb:1048/137/1_Microbiome:Unspiked-pig-feces(P2)-at-16-hours-(22°C)_vs_Unspiked-pig-feces(P2)-at-64-hours-(-20°C)_UP NA 216851 157 841 33024 -bsdb:1048/137/2_Microbiome:Unspiked-pig-feces(P2)-at-16-hours-(22°C)_vs_Unspiked-pig-feces(P2)-at-64-hours-(-20°C)_DOWN NA 838 -bsdb:1048/138/1_Microbiome:Unspiked-pig-feces(P2)-at-64-hours-(22°C)_vs_Unspiked-pig-feces(P2)-at-64-hours-(-20°C)_UP NA 157 216851 33024 841 -bsdb:1048/138/2_Microbiome:Unspiked-pig-feces(P2)-at-64-hours-(22°C)_vs_Unspiked-pig-feces(P2)-at-64-hours-(-20°C)_DOWN NA 838 -bsdb:1048/139/1_Microbiome:Unspiked-pig-feces(P2)-at-64-hours-(5°C)_vs_Unspiked-pig-feces(P2)-at-16-hours-(5°C)_UP NA 216851 33024 841 -bsdb:1048/139/2_Microbiome:Unspiked-pig-feces(P2)-at-64-hours-(5°C)_vs_Unspiked-pig-feces(P2)-at-16-hours-(5°C)_DOWN NA 838 157 -bsdb:1048/140/1_Microbiome:Unspiked-pig-feces(P2)-at-16-hours-(22°C)_vs_Unspiked-pig-feces(P2)-at-16-hours-(5°C)_UP NA 216851 33024 841 -bsdb:1048/140/2_Microbiome:Unspiked-pig-feces(P2)-at-16-hours-(22°C)_vs_Unspiked-pig-feces(P2)-at-16-hours-(5°C)_DOWN NA 838 157 -bsdb:1048/141/1_Microbiome:Unspiked-pig-feces(P2)-at-64-hours-(22°C)_vs_Unspiked-pig-feces(P2)-at-16-hours-(5°C)_UP NA 216851 33024 841 -bsdb:1048/141/2_Microbiome:Unspiked-pig-feces(P2)-at-64-hours-(22°C)_vs_Unspiked-pig-feces(P2)-at-16-hours-(5°C)_DOWN NA 838 157 -bsdb:1048/142/1_Microbiome:Unspiked-pig-feces(P2)-at-16-hours-(22°C)_vs_Unspiked-pig-feces(P2)-at-64-hours-(5°C)_UP NA 838 157 -bsdb:1048/142/2_Microbiome:Unspiked-pig-feces(P2)-at-16-hours-(22°C)_vs_Unspiked-pig-feces(P2)-at-64-hours-(5°C)_DOWN NA 216851 33024 841 -bsdb:1048/143/1_Microbiome:Unspiked-pig-feces(P2)-at-64-hours-(22°C)_vs_Unspiked-pig-feces(P2)-at-64-hours-(5°C)_UP NA 157 33024 -bsdb:1048/143/2_Microbiome:Unspiked-pig-feces(P2)-at-64-hours-(22°C)_vs_Unspiked-pig-feces(P2)-at-64-hours-(5°C)_DOWN NA 838 216851 841 -bsdb:1048/144/1_Microbiome:Unspiked-pig-feces(P2)-at-64-hours-(22°C)_vs_Unspiked-pig-feces(P2)-at-16-hours-(22°C)_UP NA 157 33024 841 -bsdb:1048/144/2_Microbiome:Unspiked-pig-feces(P2)-at-64-hours-(22°C)_vs_Unspiked-pig-feces(P2)-at-16-hours-(22°C)_DOWN NA 216851 838 -bsdb:1048/145/1_Microbiome:Unspiked-sewage-samples-(S1)-at-16-hours-(-80°C)_vs_Unspiked-sewage-samples-(S1)-at-0-hours_UP NA 28196 838 642 -bsdb:1048/145/2_Microbiome:Unspiked-sewage-samples-(S1)-at-16-hours-(-80°C)_vs_Unspiked-sewage-samples-(S1)-at-0-hours_DOWN NA 469 375288 -bsdb:1048/146/1_Microbiome:Unspiked-sewage-samples-(S1)-at-64-hours-(-80°C)_vs_Unspiked-sewage-samples-(S1)-at-0-hours_UP NA 28196 642 -bsdb:1048/146/2_Microbiome:Unspiked-sewage-samples-(S1)-at-64-hours-(-80°C)_vs_Unspiked-sewage-samples-(S1)-at-0-hours_DOWN NA 469 375288 838 -bsdb:1048/147/1_Microbiome:Unspiked-sewage-samples-(S1)-at-16-hours-(-20°C)_vs_Unspiked-sewage-samples-(S1)-at-0-hours_UP NA 28196 642 -bsdb:1048/147/2_Microbiome:Unspiked-sewage-samples-(S1)-at-16-hours-(-20°C)_vs_Unspiked-sewage-samples-(S1)-at-0-hours_DOWN NA 469 375288 838 -bsdb:1048/148/1_Microbiome:Unspiked-sewage-samples-(S1)-at-64-hours-(-20°C)_vs_Unspiked-sewage-samples-(S1)-at-0-hours_UP NA 28196 642 838 -bsdb:1048/148/2_Microbiome:Unspiked-sewage-samples-(S1)-at-64-hours-(-20°C)_vs_Unspiked-sewage-samples-(S1)-at-0-hours_DOWN NA 375288 469 -bsdb:1048/149/1_Microbiome:Unspiked-sewage-samples-(S1)-at-16-hours-(5°C)_vs_Unspiked-sewage-samples-(S1)-at-0-hours_UP NA 28196 838 642 -bsdb:1048/149/2_Microbiome:Unspiked-sewage-samples-(S1)-at-16-hours-(5°C)_vs_Unspiked-sewage-samples-(S1)-at-0-hours_DOWN NA 469 375288 -bsdb:1048/150/1_Microbiome:Unspiked-sewage-samples-(S1)-at-64-hours-(5°C)_vs_Unspiked-sewage-samples-(S1)-at-0-hours_UP NA 375288 838 642 -bsdb:1048/150/2_Microbiome:Unspiked-sewage-samples-(S1)-at-64-hours-(5°C)_vs_Unspiked-sewage-samples-(S1)-at-0-hours_DOWN NA 28196 469 -bsdb:1048/151/1_Microbiome:Unspiked-sewage-samples-(S1)-at-16-hours-(22°C)_vs_Unspiked-sewage-samples-(S1)-at-0-hours_UP NA 375288 838 642 -bsdb:1048/151/2_Microbiome:Unspiked-sewage-samples-(S1)-at-16-hours-(22°C)_vs_Unspiked-sewage-samples-(S1)-at-0-hours_DOWN NA 28196 469 -bsdb:1048/152/1_Microbiome:Unspiked-sewage-samples-(S1)-at-64-hours-(22°C)_vs_Unspiked-sewage-samples-(S1)-at-0-hours_UP NA 838 642 -bsdb:1048/152/2_Microbiome:Unspiked-sewage-samples-(S1)-at-64-hours-(22°C)_vs_Unspiked-sewage-samples-(S1)-at-0-hours_DOWN NA 28196 469 375288 -bsdb:1048/153/1_Microbiome:Unspiked-sewage-samples-(S1)-at-64-hours-(-80°C)_vs_Unspiked-sewage-samples-(S1)-at-16-hours-(-80°C)_UP NA 642 -bsdb:1048/153/2_Microbiome:Unspiked-sewage-samples-(S1)-at-64-hours-(-80°C)_vs_Unspiked-sewage-samples-(S1)-at-16-hours-(-80°C)_DOWN NA 28196 469 375288 838 -bsdb:1048/154/1_Microbiome:Unspiked-sewage-samples-(S1)-at-16-hours-(-20°C)_vs_Unspiked-sewage-samples-(S1)-at-16-hours-(-80°C)_UP NA 469 -bsdb:1048/154/2_Microbiome:Unspiked-sewage-samples-(S1)-at-16-hours-(-20°C)_vs_Unspiked-sewage-samples-(S1)-at-16-hours-(-80°C)_DOWN NA 28196 375288 838 642 -bsdb:1048/155/1_Microbiome:Unspiked-sewage-samples-(S1)-at-64-hours-(-20°C)_vs_Unspiked-sewage-samples-(S1)-at-16-hours-(-80°C)_UP NA 838 -bsdb:1048/155/2_Microbiome:Unspiked-sewage-samples-(S1)-at-64-hours-(-20°C)_vs_Unspiked-sewage-samples-(S1)-at-16-hours-(-80°C)_DOWN NA 28196 469 375288 642 -bsdb:1048/156/1_Microbiome:Unspiked-sewage-samples-(S1)-at-16-hours-(5°C)_vs_Unspiked-sewage-samples-(S1)-at-16-hours-(-80°C)_UP NA 375288 838 -bsdb:1048/156/2_Microbiome:Unspiked-sewage-samples-(S1)-at-16-hours-(5°C)_vs_Unspiked-sewage-samples-(S1)-at-16-hours-(-80°C)_DOWN NA 28196 469 642 -bsdb:1048/157/1_Microbiome:Unspiked-sewage-samples-(S1)-at-64-hours-(5°C)_vs_Unspiked-sewage-samples-(S1)-at-16-hours-(-80°C)_UP NA 375288 -bsdb:1048/157/2_Microbiome:Unspiked-sewage-samples-(S1)-at-64-hours-(5°C)_vs_Unspiked-sewage-samples-(S1)-at-16-hours-(-80°C)_DOWN NA 28196 469 838 642 -bsdb:1048/158/1_Microbiome:Unspiked-sewage-samples-(S1)-at-16-hours-(22°C)_vs_Unspiked-sewage-samples-(S1)-at-16-hours-(-80°C)_UP NA 469 375288 838 -bsdb:1048/158/2_Microbiome:Unspiked-sewage-samples-(S1)-at-16-hours-(22°C)_vs_Unspiked-sewage-samples-(S1)-at-16-hours-(-80°C)_DOWN NA 28196 642 -bsdb:1048/159/1_Microbiome:Unspiked-sewage-samples-(S1)-at-64-hours-(22°C)_vs_Unspiked-sewage-samples-(S1)-at-16-hours-(-80°C)_UP NA 838 642 -bsdb:1048/159/2_Microbiome:Unspiked-sewage-samples-(S1)-at-64-hours-(22°C)_vs_Unspiked-sewage-samples-(S1)-at-16-hours-(-80°C)_DOWN NA 28196 469 375288 -bsdb:1048/160/1_Microbiome:Unspiked-sewage-samples-(S1)-at-16-hours-(-20°C)_vs_Unspiked-sewage-samples-(S1)-at-64-hours-(-80°C)_UP NA 28196 469 375288 642 -bsdb:1048/160/2_Microbiome:Unspiked-sewage-samples-(S1)-at-16-hours-(-20°C)_vs_Unspiked-sewage-samples-(S1)-at-64-hours-(-80°C)_DOWN NA 838 -bsdb:1048/161/1_Microbiome:Unspiked-sewage-samples-(S1)-at-64-hours-(-20°C)_vs_Unspiked-sewage-samples-(S1)-at-64-hours-(-80°C)_UP NA 28196 469 375288 838 -bsdb:1048/161/2_Microbiome:Unspiked-sewage-samples-(S1)-at-64-hours-(-20°C)_vs_Unspiked-sewage-samples-(S1)-at-64-hours-(-80°C)_DOWN NA 642 -bsdb:1048/162/1_Microbiome:Unspiked-sewage-samples-(S1)-at-16-hours-(5°C)_vs_Unspiked-sewage-samples-(S1)-at-64-hours-(-80°C)_UP NA 28196 469 375288 838 -bsdb:1048/162/2_Microbiome:Unspiked-sewage-samples-(S1)-at-16-hours-(5°C)_vs_Unspiked-sewage-samples-(S1)-at-64-hours-(-80°C)_DOWN NA 642 -bsdb:1048/207/1_Microbiome:Unspiked-sewage-samples-(S2)-at-16-hours-(5°C)_vs_Unspiked-sewage-samples-(S2)-at-64-hours-(-20°C)_UP NA 375288 -bsdb:1048/207/2_Microbiome:Unspiked-sewage-samples-(S2)-at-16-hours-(5°C)_vs_Unspiked-sewage-samples-(S2)-at-64-hours-(-20°C)_DOWN NA 28196 469 838 642 bsdb:1049/1/2_Atopic-eczema:cADtreat-dogs_vs_Healthy-dogs_DOWN NA 1663 1716 bsdb:1049/2/1_Atopic-eczema:cADpost-dogs_vs_cADpre-dogs_DOWN NA 1663 1386 1298 286 204447 bsdb:1049/2/2_Atopic-eczema:cADpost-dogs_vs_cADpre-dogs_UP NA 1716 1912216 407 1839 265 125216 295418 13687 1279 1301 @@ -4302,26 +4146,6 @@ bsdb:1049/41/2_Atopic-eczema:cADpost-dogs_vs_cADpre-dogs_UP NA 434 1912216 bsdb:1049/43/1_Atopic-eczema:cADpre-dogs_vs_Healthy-dogs_UP NA 1279 bsdb:1049/44/1_Atopic-eczema:cADtreat-dogs_vs_Healthy-dogs_DOWN NA 475 bsdb:1049/44/2_Atopic-eczema:cADtreat-dogs_vs_Healthy-dogs_UP NA 47670 -bsdb:1049/47/1_Atopic-eczema:cADpre-dogs_vs_Healthy-dogs_UP NA 1279 -bsdb:1049/48/1_Atopic-eczema:cADpost-dogs_vs_cADpre-dogs_DOWN NA 1279 -bsdb:1049/49/1_Atopic-eczema:cADpre-dogs_vs_Healthy-dogs_UP NA 1279 -bsdb:1049/50/1_Atopic-eczema:cADpre-dogs_vs_Healthy-dogs_UP NA 1279 -bsdb:1049/51/1_Atopic-eczema:cADpost-dogs_vs_cADpre-dogs_DOWN NA 1279 -bsdb:1049/52/1_Atopic-eczema:cADtreat-dogs_vs_cADpre-dogs_DOWN NA 1279 -bsdb:1049/53/1_Atopic-eczema:cADpre-dogs_vs_Healthy-dogs_UP NA 1279 -bsdb:1049/54/1_Atopic-eczema:cADpre-dogs_vs_Healthy-dogs_UP NA 1279 -bsdb:1049/55/1_Atopic-eczema:cADpost-dogs_vs_cADpre-dogs_DOWN NA 1279 -bsdb:1049/56/1_Atopic-eczema:cADtreat-dogs_vs_cADpre-dogs_DOWN NA 1279 -bsdb:1049/57/1_Atopic-eczema:cADpre-dogs_vs_Healthy-dogs_UP NA 1279 -bsdb:1049/58/1_Atopic-eczema:cADpost-dogs_vs_cADpre-dogs_DOWN NA 1279 -bsdb:1049/59/1_Atopic-eczema:Mitochondrial-haplogroups-C_vs_Mitochondrial-haplogroups-A_DOWN NA 207244 1301 2039240 572511 2749267 -bsdb:1049/60/1_Atopic-eczema:Mitochondrial-haplogroups-C_vs_Mitochondrial-haplogroups-A_DOWN NA 1663 816 -bsdb:1049/61/2_Atopic-eczema:Mitochondrial-haplogroups-C_vs_Mitochondrial-haplogroups-A_DOWN NA 295418 724 -bsdb:1049/62/1_Atopic-eczema:Mitochondrial-haplogroups-C_vs_Mitochondrial-haplogroups-A_UP NA 32207 195950 40323 -bsdb:1049/62/2_Atopic-eczema:Mitochondrial-haplogroups-C_vs_Mitochondrial-haplogroups-A_DOWN NA 237 745 -bsdb:1049/63/1_Atopic-eczema:Mitochondrial-haplogroups-C_vs_Mitochondrial-haplogroups-A_DOWN NA 841 -bsdb:1049/64/1_Atopic-eczema:Mitochondrial-haplogroups-C_vs_Mitochondrial-haplogroups-A_UP NA 724 -bsdb:1049/64/2_Atopic-eczema:Mitochondrial-haplogroups-C_vs_Mitochondrial-haplogroups-A_DOWN NA 816 1016 482 bsdb:1050/1/1_Taxonomic-microbiome-measurement:Esophagus_vs_Oral-cavity_UP NA 469 713 174708 572511 374 59732 33042 212791 407 165696 528 119852 20 1743 286 48736 1007 504481 165695 13687 1279 40323 1301 bsdb:1050/1/2_Taxonomic-microbiome-measurement:Esophagus_vs_Oral-cavity_DOWN NA 1654 2717 482 346096 970 bsdb:1051/1/1_Lung-cancer:Lung-cancer-(L-group)_vs_Benign-pulmonary-diseases-(N-group)_UP NA 816 diff --git a/bugsigdb_signatures_genus_ncbi_exact.gmt b/bugsigdb_signatures_genus_ncbi_exact.gmt index 29e0949e4..3a9d36316 100644 --- a/bugsigdb_signatures_genus_ncbi_exact.gmt +++ b/bugsigdb_signatures_genus_ncbi_exact.gmt @@ -1,4 +1,4 @@ -# BugSigDB 2025-01-25_15:58_UTC, License: Creative Commons Attribution 4.0 International, URL: https://bugsigdb.org +# BugSigDB 2025-01-26_10:58_UTC, License: Creative Commons Attribution 4.0 International, URL: https://bugsigdb.org bsdb:1/1/1_Colorectal-adenoma:conventional-adenoma-cases_vs_controls_UP NA 1654 1716 1301 162289 189330 33024 40544 1386 bsdb:1/1/2_Colorectal-adenoma:conventional-adenoma-cases_vs_controls_DOWN NA 100883 bsdb:1/2/1_Hyperplastic-Polyp:hyperplastic-polyp-cases_vs_controls_UP NA 207244 @@ -3419,162 +3419,6 @@ bsdb:1048/44/1_Microbiome:Unspiked-pig-feces(P1)-at-16-hours-(5°C)_vs_Unspiked- bsdb:1048/44/2_Microbiome:Unspiked-pig-feces(P1)-at-16-hours-(5°C)_vs_Unspiked-pig-feces(P1)-at-16-hours-(-80°C)_DOWN NA 838 33024 bsdb:1048/45/1_Microbiome:Unspiked-pig-feces(P1)-at-64-hours-(5°C)_vs_Unspiked-pig-feces(P1)-at-16-hours-(-80°C)_UP NA 157 216851 33024 841 bsdb:1048/45/2_Microbiome:Unspiked-pig-feces(P1)-at-64-hours-(5°C)_vs_Unspiked-pig-feces(P1)-at-16-hours-(-80°C)_DOWN NA 838 -bsdb:1048/46/1_Microbiome:Unspiked-pig-feces(P1)-at-16-hours-(22°C)_vs_Unspiked-pig-feces(P1)-at-16-hours-(-80°C)_UP NA 157 216851 841 -bsdb:1048/46/2_Microbiome:Unspiked-pig-feces(P1)-at-16-hours-(22°C)_vs_Unspiked-pig-feces(P1)-at-16-hours-(-80°C)_DOWN NA 838 33024 -bsdb:1048/47/1_Microbiome:Unspiked-pig-feces(P1)-at-64-hours-(22°C)_vs_Unspiked-pig-feces(P1)-at-16-hours-(-80°C)_UP NA 157 216851 -bsdb:1048/47/2_Microbiome:Unspiked-pig-feces(P1)-at-64-hours-(22°C)_vs_Unspiked-pig-feces(P1)-at-16-hours-(-80°C)_DOWN NA 838 -bsdb:1048/48/1_Microbiome:Unspiked-pig-feces(P1)-at-16-hours-(-20°C)_vs_Unspiked-pig-feces(P1)-at-64-hours-(-80°C)_UP NA 216851 841 -bsdb:1048/48/2_Microbiome:Unspiked-pig-feces(P1)-at-16-hours-(-20°C)_vs_Unspiked-pig-feces(P1)-at-64-hours-(-80°C)_DOWN NA 838 157 33024 -bsdb:1048/49/1_Microbiome:Unspiked-pig-feces(P1)-at-64-hours-(-20°C)_vs_Unspiked-pig-feces(P1)-at-64-hours-(-80°C)_UP NA 157 216851 841 -bsdb:1048/49/2_Microbiome:Unspiked-pig-feces(P1)-at-64-hours-(-20°C)_vs_Unspiked-pig-feces(P1)-at-64-hours-(-80°C)_DOWN NA 838 33024 -bsdb:1048/50/1_Microbiome:Unspiked-pig-feces(P1)-at-16-hours-(5°C)_vs_Unspiked-pig-feces(P1)-at-64-hours-(-80°C)_UP NA 157 216851 841 -bsdb:1048/50/2_Microbiome:Unspiked-pig-feces(P1)-at-16-hours-(5°C)_vs_Unspiked-pig-feces(P1)-at-64-hours-(-80°C)_DOWN NA 838 33024 -bsdb:1048/51/1_Microbiome:Unspiked-pig-feces(P1)-at-64-hours-(5°C)_vs_Unspiked-pig-feces(P1)-at-64-hours-(-80°C)_UP NA 216851 841 -bsdb:1048/51/2_Microbiome:Unspiked-pig-feces(P1)-at-64-hours-(5°C)_vs_Unspiked-pig-feces(P1)-at-64-hours-(-80°C)_DOWN NA 838 157 33024 -bsdb:1048/52/1_Microbiome:Unspiked-pig-feces(P1)-at-16-hours-(22°C)_vs_Unspiked-pig-feces(P1)-at-64-hours-(-80°C)_UP NA 157 216851 33024 841 -bsdb:1048/52/2_Microbiome:Unspiked-pig-feces(P1)-at-16-hours-(22°C)_vs_Unspiked-pig-feces(P1)-at-64-hours-(-80°C)_DOWN NA 838 -bsdb:1048/53/1_Microbiome:Unspiked-pig-feces(P1)-at-64-hours-(22°C)_vs_Unspiked-pig-feces(P1)-at-64-hours-(-80°C)_UP NA 157 216851 33024 841 -bsdb:1048/53/2_Microbiome:Unspiked-pig-feces(P1)-at-64-hours-(22°C)_vs_Unspiked-pig-feces(P1)-at-64-hours-(-80°C)_DOWN NA 838 -bsdb:1048/54/1_Microbiome:Unspiked-pig-feces(P1)-at-64-hours-(-20°C)_vs_Unspiked-pig-feces(P1)-at-16-hours-(-20°C)_UP NA 157 -bsdb:1048/54/2_Microbiome:Unspiked-pig-feces(P1)-at-64-hours-(-20°C)_vs_Unspiked-pig-feces(P1)-at-16-hours-(-20°C)_DOWN NA 838 33024 216851 841 -bsdb:1048/55/1_Microbiome:Unspiked-pig-feces(P1)-at-16-hours-(5°C)_vs_Unspiked-pig-feces(P1)-at-16-hours-(-20°C)_UP NA 157 216851 841 -bsdb:1048/55/2_Microbiome:Unspiked-pig-feces(P1)-at-16-hours-(5°C)_vs_Unspiked-pig-feces(P1)-at-16-hours-(-20°C)_DOWN NA 838 33024 -bsdb:1048/56/1_Microbiome:Unspiked-pig-feces(P1)-at-64-hours-(5°C)_vs_Unspiked-pig-feces(P1)-at-16-hours-(-20°C)_UP NA 157 216851 33024 841 -bsdb:1048/56/2_Microbiome:Unspiked-pig-feces(P1)-at-64-hours-(5°C)_vs_Unspiked-pig-feces(P1)-at-16-hours-(-20°C)_DOWN NA 838 -bsdb:1048/57/1_Microbiome:Unspiked-pig-feces(P1)-at-16-hours-(22°C)_vs_Unspiked-pig-feces(P1)-at-16-hours-(-20°C)_UP NA 157 216851 33024 841 -bsdb:1048/57/2_Microbiome:Unspiked-pig-feces(P1)-at-16-hours-(22°C)_vs_Unspiked-pig-feces(P1)-at-16-hours-(-20°C)_DOWN NA 838 -bsdb:1048/58/1_Microbiome:Unspiked-pig-feces(P1)-at-64-hours-(22°C)_vs_Unspiked-pig-feces(P1)-at-16-hours-(-20°C)_UP NA 157 216851 33024 841 -bsdb:1048/58/2_Microbiome:Unspiked-pig-feces(P1)-at-64-hours-(22°C)_vs_Unspiked-pig-feces(P1)-at-16-hours-(-20°C)_DOWN NA 838 -bsdb:1048/62/1_Microbiome:Unspiked-pig-feces(P1)-at-16-hours-(5°C)_vs_Unspiked-pig-feces(P1)-at-64-hours-(-20°C)_UP NA 157 216851 -bsdb:1048/62/2_Microbiome:Unspiked-pig-feces(P1)-at-16-hours-(5°C)_vs_Unspiked-pig-feces(P1)-at-64-hours-(-20°C)_DOWN NA 838 33024 841 -bsdb:1048/64/1_Microbiome:Unspiked-pig-feces(P1)-at-64-hours-(5°C)_vs_Unspiked-pig-feces(P1)-at-64-hours-(-20°C)_UP NA 216851 33024 841 -bsdb:1048/64/2_Microbiome:Unspiked-pig-feces(P1)-at-64-hours-(5°C)_vs_Unspiked-pig-feces(P1)-at-64-hours-(-20°C)_DOWN NA 838 157 -bsdb:1048/65/1_Microbiome:Unspiked-pig-feces(P1)-at-16-hours-(22°C)_vs_Unspiked-pig-feces(P1)-at-64-hours-(-20°C)_UP NA 157 216851 33024 841 -bsdb:1048/65/2_Microbiome:Unspiked-pig-feces(P1)-at-16-hours-(22°C)_vs_Unspiked-pig-feces(P1)-at-64-hours-(-20°C)_DOWN NA 838 -bsdb:1048/66/1_Microbiome:Unspiked-pig-feces(P1)-at-64-hours-(22°C)_vs_Unspiked-pig-feces(P1)-at-64-hours-(-20°C)_UP NA 157 33024 216851 841 -bsdb:1048/66/2_Microbiome:Unspiked-pig-feces(P1)-at-64-hours-(22°C)_vs_Unspiked-pig-feces(P1)-at-64-hours-(-20°C)_DOWN NA 838 -bsdb:1048/67/1_Microbiome:Unspiked-pig-feces(P1)-at-64-hours-(5°C)_vs_Unspiked-pig-feces(P1)-at-16-hours-(5°C)_UP NA 157 216851 841 -bsdb:1048/67/2_Microbiome:Unspiked-pig-feces(P1)-at-64-hours-(5°C)_vs_Unspiked-pig-feces(P1)-at-16-hours-(5°C)_DOWN NA 838 33024 -bsdb:1048/68/1_Microbiome:Unspiked-pig-feces(P1)-at-16-hours-(22°C)_vs_Unspiked-pig-feces(P1)-at-16-hours-(5°C)_UP NA 157 216851 33024 841 -bsdb:1048/68/2_Microbiome:Unspiked-pig-feces(P1)-at-16-hours-(22°C)_vs_Unspiked-pig-feces(P1)-at-16-hours-(5°C)_DOWN NA 838 -bsdb:1048/69/1_Microbiome:Unspiked-pig-feces(P1)-at-64-hours-(22°C)_vs_Unspiked-pig-feces(P1)-at-16-hours-(5°C)_UP NA 216851 33024 841 -bsdb:1048/69/2_Microbiome:Unspiked-pig-feces(P1)-at-64-hours-(22°C)_vs_Unspiked-pig-feces(P1)-at-16-hours-(5°C)_DOWN NA 838 157 -bsdb:1048/70/1_Microbiome:Unspiked-pig-feces(P1)-at-16-hours-(22°C)_vs_Unspiked-pig-feces(P1)-at-64-hours-(5°C)_UP NA 157 216851 -bsdb:1048/70/2_Microbiome:Unspiked-pig-feces(P1)-at-16-hours-(22°C)_vs_Unspiked-pig-feces(P1)-at-64-hours-(5°C)_DOWN NA 838 33024 841 -bsdb:1048/71/1_Microbiome:Unspiked-pig-feces(P1)-at-64-hours-(22°C)_vs_Unspiked-pig-feces(P1)-at-64-hours-(5°C)_UP NA 157 216851 -bsdb:1048/71/2_Microbiome:Unspiked-pig-feces(P1)-at-64-hours-(22°C)_vs_Unspiked-pig-feces(P1)-at-64-hours-(5°C)_DOWN NA 838 33024 841 -bsdb:1048/72/1_Microbiome:Unspiked-pig-feces(P1)-at-64-hours-(22°C)_vs_Unspiked-pig-feces(P1)-at-16-hours-(22°C)_UP NA 157 216851 -bsdb:1048/72/2_Microbiome:Unspiked-pig-feces(P1)-at-64-hours-(22°C)_vs_Unspiked-pig-feces(P1)-at-16-hours-(22°C)_DOWN NA 838 33024 841 -bsdb:1048/109/1_Microbiome:Unspiked-pig-feces(P2)-at-16-hours-(-80°C)_vs_Unspiked-pig-feces(P2)-at-0-hour_UP NA 33024 838 841 -bsdb:1048/109/2_Microbiome:Unspiked-pig-feces(P2)-at-16-hours-(-80°C)_vs_Unspiked-pig-feces(P2)-at-0-hour_DOWN NA 216851 157 -bsdb:1048/110/1_Microbiome:Unspiked-pig-feces(P2)-at-64-hours-(-80°C)_vs_Unspiked-pig-feces(P2)-at-0-hour_UP NA 838 -bsdb:1048/110/2_Microbiome:Unspiked-pig-feces(P2)-at-64-hours-(-80°C)_vs_Unspiked-pig-feces(P2)-at-0-hour_DOWN NA 216851 33024 841 157 -bsdb:1048/111/1_Microbiome:Unspiked-pig-feces(P2)-at-16-hours-(-20°C)_vs_Unspiked-pig-feces(P2)-at-0-hour_UP NA 838 33024 841 -bsdb:1048/111/2_Microbiome:Unspiked-pig-feces(P2)-at-16-hours-(-20°C)_vs_Unspiked-pig-feces(P2)-at-0-hour_DOWN NA 157 216851 -bsdb:1048/112/1_Microbiome:Unspiked-pig-feces(P2)-at-64-hours-(-20°C)_vs_Unspiked-pig-feces(P2)-at-0-hour_UP NA 838 33024 -bsdb:1048/112/2_Microbiome:Unspiked-pig-feces(P2)-at-64-hours-(-20°C)_vs_Unspiked-pig-feces(P2)-at-0-hour_DOWN NA 157 216851 841 -bsdb:1048/113/1_Microbiome:Unspiked-pig-feces(P2)-at-16-hours-(5°C)_vs_Unspiked-pig-feces(P2)-at-0-hour_UP NA 216851 33024 841 -bsdb:1048/113/2_Microbiome:Unspiked-pig-feces(P2)-at-16-hours-(5°C)_vs_Unspiked-pig-feces(P2)-at-0-hour_DOWN NA 838 157 -bsdb:1048/114/1_Microbiome:Unspiked-pig-feces(P2)-at-64-hours-(5°C)_vs_Unspiked-pig-feces(P2)-at-0-hour_UP NA 216851 33024 841 -bsdb:1048/114/2_Microbiome:Unspiked-pig-feces(P2)-at-64-hours-(5°C)_vs_Unspiked-pig-feces(P2)-at-0-hour_DOWN NA 838 157 -bsdb:1048/115/1_Microbiome:Unspiked-pig-feces(P2)-at-16-hours-(22°C)_vs_Unspiked-pig-feces(P2)-at-0-hour_UP NA 216851 33024 841 -bsdb:1048/115/2_Microbiome:Unspiked-pig-feces(P2)-at-16-hours-(22°C)_vs_Unspiked-pig-feces(P2)-at-0-hour_DOWN NA 838 157 -bsdb:1048/116/1_Microbiome:Unspiked-pig-feces(P2)-at-64-hours-(22°C)_vs_Unspiked-pig-feces(P2)-at-0-hour_UP NA 216851 33024 841 -bsdb:1048/116/2_Microbiome:Unspiked-pig-feces(P2)-at-64-hours-(22°C)_vs_Unspiked-pig-feces(P2)-at-0-hour_DOWN NA 838 157 -bsdb:1048/117/1_Microbiome:Unspiked-pig-feces(P2)-at-64-hours-(80°C)_vs_Unspiked-pig-feces(P2)-at-16-hours-(-80°C)_UP NA 216851 -bsdb:1048/117/2_Microbiome:Unspiked-pig-feces(P2)-at-64-hours-(80°C)_vs_Unspiked-pig-feces(P2)-at-16-hours-(-80°C)_DOWN NA 838 157 33024 841 -bsdb:1048/118/1_Microbiome:Unspiked-pig-feces(P2)-at-16-hours-(-20°C)_vs_Unspiked-pig-feces(P2)-at-16-hours-(-80°C)_UP NA 838 33024 -bsdb:1048/118/2_Microbiome:Unspiked-pig-feces(P2)-at-16-hours-(-20°C)_vs_Unspiked-pig-feces(P2)-at-16-hours-(-80°C)_DOWN NA 157 216851 841 -bsdb:1048/119/1_Microbiome:Unspiked-pig-feces(P2)-at-64-hours-(-20°C)_vs_Unspiked-pig-feces(P2)-at-16-hours-(-80°C)_UP NA 838 33024 -bsdb:1048/119/2_Microbiome:Unspiked-pig-feces(P2)-at-64-hours-(-20°C)_vs_Unspiked-pig-feces(P2)-at-16-hours-(-80°C)_DOWN NA 157 216851 841 -bsdb:1048/120/1_Microbiome:Unspiked-pig-feces(P2)-at-16-hours-(5°C)_vs_Unspiked-pig-feces(P2)-at-16-hours-(-80°C)_UP NA 157 216851 33024 841 -bsdb:1048/120/2_Microbiome:Unspiked-pig-feces(P2)-at-16-hours-(5°C)_vs_Unspiked-pig-feces(P2)-at-16-hours-(-80°C)_DOWN NA 838 -bsdb:1048/121/1_Microbiome:Unspiked-pig-feces(P2)-at-64-hours-(5°C)_vs_Unspiked-pig-feces(P2)-at-16-hours-(-80°C)_UP NA 157 216851 33024 841 -bsdb:1048/121/2_Microbiome:Unspiked-pig-feces(P2)-at-64-hours-(5°C)_vs_Unspiked-pig-feces(P2)-at-16-hours-(-80°C)_DOWN NA 838 -bsdb:1048/122/1_Microbiome:Unspiked-pig-feces(P2)-at-16-hours-(22°C)_vs_Unspiked-pig-feces(P2)-at-16-hours-(-80°C)_UP NA 157 216851 33024 841 -bsdb:1048/122/2_Microbiome:Unspiked-pig-feces(P2)-at-16-hours-(22°C)_vs_Unspiked-pig-feces(P2)-at-16-hours-(-80°C)_DOWN NA 838 -bsdb:1048/123/1_Microbiome:Unspiked-pig-feces(P2)-at-64-hours-(22°C)_vs_Unspiked-pig-feces(P2)-at-16-hours-(-80°C)_UP NA 157 216851 33024 841 -bsdb:1048/123/2_Microbiome:Unspiked-pig-feces(P2)-at-64-hours-(22°C)_vs_Unspiked-pig-feces(P2)-at-16-hours-(-80°C)_DOWN NA 838 -bsdb:1048/124/1_Microbiome:Unspiked-pig-feces(P2)-at-16-hours-(-20°C)_vs_Unspiked-pig-feces(P2)-at-64-hours-(-80°C)_UP NA 838 157 33024 841 -bsdb:1048/124/2_Microbiome:Unspiked-pig-feces(P2)-at-16-hours-(-20°C)_vs_Unspiked-pig-feces(P2)-at-64-hours-(-80°C)_DOWN NA 216851 -bsdb:1048/125/1_Microbiome:Unspiked-pig-feces(P2)-at-64-hours-(-20°C)_vs_Unspiked-pig-feces(P2)-at-64-hours-(-80°C)_UP NA 838 157 33024 -bsdb:1048/125/2_Microbiome:Unspiked-pig-feces(P2)-at-64-hours-(-20°C)_vs_Unspiked-pig-feces(P2)-at-64-hours-(-80°C)_DOWN NA 216851 841 -bsdb:1048/126/1_Microbiome:Unspiked-pig-feces(P2)-at-16-hours-(5°C)_vs_Unspiked-pig-feces(P2)-at-64-hours-(-80°C)_UP NA 157 216851 33024 841 -bsdb:1048/126/2_Microbiome:Unspiked-pig-feces(P2)-at-16-hours-(5°C)_vs_Unspiked-pig-feces(P2)-at-64-hours-(-80°C)_DOWN NA 838 -bsdb:1048/127/1_Microbiome:Unspiked-pig-feces(P2)-at-64-hours-(5°C)_vs_Unspiked-pig-feces(P2)-at-64-hours-(-80°C)_UP NA 216851 33024 841 157 -bsdb:1048/127/2_Microbiome:Unspiked-pig-feces(P2)-at-64-hours-(5°C)_vs_Unspiked-pig-feces(P2)-at-64-hours-(-80°C)_DOWN NA 838 -bsdb:1048/128/1_Microbiome:Unspiked-pig-feces(P2)-at-16-hours-(22°C)_vs_Unspiked-pig-feces(P2)-at-64-hours-(-80°C)_UP NA 157 216851 33024 841 -bsdb:1048/128/2_Microbiome:Unspiked-pig-feces(P2)-at-16-hours-(22°C)_vs_Unspiked-pig-feces(P2)-at-64-hours-(-80°C)_DOWN NA 838 -bsdb:1048/129/1_Microbiome:Unspiked-pig-feces(P2)-at-64-hours-(22°C)_vs_Unspiked-pig-feces(P2)-at-64-hours-(-80°C)_UP NA 216851 33024 157 841 -bsdb:1048/129/2_Microbiome:Unspiked-pig-feces(P2)-at-64-hours-(22°C)_vs_Unspiked-pig-feces(P2)-at-64-hours-(-80°C)_DOWN NA 838 -bsdb:1048/130/1_Microbiome:Unspiked-pig-feces(P2)-at-64-hours-(-20°C)_vs_Unspiked-pig-feces(P2)-at-16-hours-(-20°C)_UP NA 33024 -bsdb:1048/130/2_Microbiome:Unspiked-pig-feces(P2)-at-64-hours-(-20°C)_vs_Unspiked-pig-feces(P2)-at-16-hours-(-20°C)_DOWN NA 838 157 216851 841 -bsdb:1048/131/1_Microbiome:Unspiked-pig-feces(P2)-at-16-hours-(5°C)_vs_Unspiked-pig-feces(P2)-at-16-hours-(-20°C)_UP NA 157 216851 33024 841 -bsdb:1048/131/2_Microbiome:Unspiked-pig-feces(P2)-at-16-hours-(5°C)_vs_Unspiked-pig-feces(P2)-at-16-hours-(-20°C)_DOWN NA 838 -bsdb:1048/132/1_Microbiome:Unspiked-pig-feces(P2)-at-64-hours-(5°C)_vs_Unspiked-pig-feces(P2)-at-16-hours-(-20°C)_UP NA 157 216851 33024 841 -bsdb:1048/132/2_Microbiome:Unspiked-pig-feces(P2)-at-64-hours-(5°C)_vs_Unspiked-pig-feces(P2)-at-16-hours-(-20°C)_DOWN NA 838 -bsdb:1048/133/1_Microbiome:Unspiked-pig-feces(P2)-at-16-hours-(22°C)_vs_Unspiked-pig-feces(P2)-at-16-hours-(-20°C)_UP NA 157 216851 33024 841 -bsdb:1048/133/2_Microbiome:Unspiked-pig-feces(P2)-at-16-hours-(22°C)_vs_Unspiked-pig-feces(P2)-at-16-hours-(-20°C)_DOWN NA 838 -bsdb:1048/134/1_Microbiome:Unspiked-pig-feces(P2)-at-64-hours-(22°C)_vs_Unspiked-pig-feces(P2)-at-16-hours-(-20°C)_UP NA 157 216851 33024 841 -bsdb:1048/134/2_Microbiome:Unspiked-pig-feces(P2)-at-64-hours-(22°C)_vs_Unspiked-pig-feces(P2)-at-16-hours-(-20°C)_DOWN NA 838 -bsdb:1048/135/1_Microbiome:Unspiked-pig-feces(P2)-at-16-hours-(5°C)_vs_Unspiked-pig-feces(P2)-at-64-hours-(-20°C)_UP NA 157 216851 841 -bsdb:1048/135/2_Microbiome:Unspiked-pig-feces(P2)-at-16-hours-(5°C)_vs_Unspiked-pig-feces(P2)-at-64-hours-(-20°C)_DOWN NA 838 33024 -bsdb:1048/136/1_Microbiome:Unspiked-pig-feces(P2)-at-64-hours-(5°C)_vs_Unspiked-pig-feces(P2)-at-64-hours-(-20°C)_UP NA 157 216851 33024 841 -bsdb:1048/136/2_Microbiome:Unspiked-pig-feces(P2)-at-64-hours-(5°C)_vs_Unspiked-pig-feces(P2)-at-64-hours-(-20°C)_DOWN NA 838 -bsdb:1048/137/1_Microbiome:Unspiked-pig-feces(P2)-at-16-hours-(22°C)_vs_Unspiked-pig-feces(P2)-at-64-hours-(-20°C)_UP NA 216851 157 841 33024 -bsdb:1048/137/2_Microbiome:Unspiked-pig-feces(P2)-at-16-hours-(22°C)_vs_Unspiked-pig-feces(P2)-at-64-hours-(-20°C)_DOWN NA 838 -bsdb:1048/138/1_Microbiome:Unspiked-pig-feces(P2)-at-64-hours-(22°C)_vs_Unspiked-pig-feces(P2)-at-64-hours-(-20°C)_UP NA 157 216851 33024 841 -bsdb:1048/138/2_Microbiome:Unspiked-pig-feces(P2)-at-64-hours-(22°C)_vs_Unspiked-pig-feces(P2)-at-64-hours-(-20°C)_DOWN NA 838 -bsdb:1048/139/1_Microbiome:Unspiked-pig-feces(P2)-at-64-hours-(5°C)_vs_Unspiked-pig-feces(P2)-at-16-hours-(5°C)_UP NA 216851 33024 841 -bsdb:1048/139/2_Microbiome:Unspiked-pig-feces(P2)-at-64-hours-(5°C)_vs_Unspiked-pig-feces(P2)-at-16-hours-(5°C)_DOWN NA 838 157 -bsdb:1048/140/1_Microbiome:Unspiked-pig-feces(P2)-at-16-hours-(22°C)_vs_Unspiked-pig-feces(P2)-at-16-hours-(5°C)_UP NA 216851 33024 841 -bsdb:1048/140/2_Microbiome:Unspiked-pig-feces(P2)-at-16-hours-(22°C)_vs_Unspiked-pig-feces(P2)-at-16-hours-(5°C)_DOWN NA 838 157 -bsdb:1048/141/1_Microbiome:Unspiked-pig-feces(P2)-at-64-hours-(22°C)_vs_Unspiked-pig-feces(P2)-at-16-hours-(5°C)_UP NA 216851 33024 841 -bsdb:1048/141/2_Microbiome:Unspiked-pig-feces(P2)-at-64-hours-(22°C)_vs_Unspiked-pig-feces(P2)-at-16-hours-(5°C)_DOWN NA 838 157 -bsdb:1048/142/1_Microbiome:Unspiked-pig-feces(P2)-at-16-hours-(22°C)_vs_Unspiked-pig-feces(P2)-at-64-hours-(5°C)_UP NA 838 157 -bsdb:1048/142/2_Microbiome:Unspiked-pig-feces(P2)-at-16-hours-(22°C)_vs_Unspiked-pig-feces(P2)-at-64-hours-(5°C)_DOWN NA 216851 33024 841 -bsdb:1048/143/1_Microbiome:Unspiked-pig-feces(P2)-at-64-hours-(22°C)_vs_Unspiked-pig-feces(P2)-at-64-hours-(5°C)_UP NA 157 33024 -bsdb:1048/143/2_Microbiome:Unspiked-pig-feces(P2)-at-64-hours-(22°C)_vs_Unspiked-pig-feces(P2)-at-64-hours-(5°C)_DOWN NA 838 216851 841 -bsdb:1048/144/1_Microbiome:Unspiked-pig-feces(P2)-at-64-hours-(22°C)_vs_Unspiked-pig-feces(P2)-at-16-hours-(22°C)_UP NA 157 33024 841 -bsdb:1048/144/2_Microbiome:Unspiked-pig-feces(P2)-at-64-hours-(22°C)_vs_Unspiked-pig-feces(P2)-at-16-hours-(22°C)_DOWN NA 216851 838 -bsdb:1048/145/1_Microbiome:Unspiked-sewage-samples-(S1)-at-16-hours-(-80°C)_vs_Unspiked-sewage-samples-(S1)-at-0-hours_UP NA 28196 838 642 -bsdb:1048/145/2_Microbiome:Unspiked-sewage-samples-(S1)-at-16-hours-(-80°C)_vs_Unspiked-sewage-samples-(S1)-at-0-hours_DOWN NA 469 375288 -bsdb:1048/146/1_Microbiome:Unspiked-sewage-samples-(S1)-at-64-hours-(-80°C)_vs_Unspiked-sewage-samples-(S1)-at-0-hours_UP NA 28196 642 -bsdb:1048/146/2_Microbiome:Unspiked-sewage-samples-(S1)-at-64-hours-(-80°C)_vs_Unspiked-sewage-samples-(S1)-at-0-hours_DOWN NA 469 375288 838 -bsdb:1048/147/1_Microbiome:Unspiked-sewage-samples-(S1)-at-16-hours-(-20°C)_vs_Unspiked-sewage-samples-(S1)-at-0-hours_UP NA 28196 642 -bsdb:1048/147/2_Microbiome:Unspiked-sewage-samples-(S1)-at-16-hours-(-20°C)_vs_Unspiked-sewage-samples-(S1)-at-0-hours_DOWN NA 469 375288 838 -bsdb:1048/148/1_Microbiome:Unspiked-sewage-samples-(S1)-at-64-hours-(-20°C)_vs_Unspiked-sewage-samples-(S1)-at-0-hours_UP NA 28196 642 838 -bsdb:1048/148/2_Microbiome:Unspiked-sewage-samples-(S1)-at-64-hours-(-20°C)_vs_Unspiked-sewage-samples-(S1)-at-0-hours_DOWN NA 375288 469 -bsdb:1048/149/1_Microbiome:Unspiked-sewage-samples-(S1)-at-16-hours-(5°C)_vs_Unspiked-sewage-samples-(S1)-at-0-hours_UP NA 28196 838 642 -bsdb:1048/149/2_Microbiome:Unspiked-sewage-samples-(S1)-at-16-hours-(5°C)_vs_Unspiked-sewage-samples-(S1)-at-0-hours_DOWN NA 469 375288 -bsdb:1048/150/1_Microbiome:Unspiked-sewage-samples-(S1)-at-64-hours-(5°C)_vs_Unspiked-sewage-samples-(S1)-at-0-hours_UP NA 375288 838 642 -bsdb:1048/150/2_Microbiome:Unspiked-sewage-samples-(S1)-at-64-hours-(5°C)_vs_Unspiked-sewage-samples-(S1)-at-0-hours_DOWN NA 28196 469 -bsdb:1048/151/1_Microbiome:Unspiked-sewage-samples-(S1)-at-16-hours-(22°C)_vs_Unspiked-sewage-samples-(S1)-at-0-hours_UP NA 375288 838 642 -bsdb:1048/151/2_Microbiome:Unspiked-sewage-samples-(S1)-at-16-hours-(22°C)_vs_Unspiked-sewage-samples-(S1)-at-0-hours_DOWN NA 28196 469 -bsdb:1048/152/1_Microbiome:Unspiked-sewage-samples-(S1)-at-64-hours-(22°C)_vs_Unspiked-sewage-samples-(S1)-at-0-hours_UP NA 838 642 -bsdb:1048/152/2_Microbiome:Unspiked-sewage-samples-(S1)-at-64-hours-(22°C)_vs_Unspiked-sewage-samples-(S1)-at-0-hours_DOWN NA 28196 469 375288 -bsdb:1048/153/1_Microbiome:Unspiked-sewage-samples-(S1)-at-64-hours-(-80°C)_vs_Unspiked-sewage-samples-(S1)-at-16-hours-(-80°C)_UP NA 642 -bsdb:1048/153/2_Microbiome:Unspiked-sewage-samples-(S1)-at-64-hours-(-80°C)_vs_Unspiked-sewage-samples-(S1)-at-16-hours-(-80°C)_DOWN NA 28196 469 375288 838 -bsdb:1048/154/1_Microbiome:Unspiked-sewage-samples-(S1)-at-16-hours-(-20°C)_vs_Unspiked-sewage-samples-(S1)-at-16-hours-(-80°C)_UP NA 469 -bsdb:1048/154/2_Microbiome:Unspiked-sewage-samples-(S1)-at-16-hours-(-20°C)_vs_Unspiked-sewage-samples-(S1)-at-16-hours-(-80°C)_DOWN NA 28196 375288 838 642 -bsdb:1048/155/1_Microbiome:Unspiked-sewage-samples-(S1)-at-64-hours-(-20°C)_vs_Unspiked-sewage-samples-(S1)-at-16-hours-(-80°C)_UP NA 838 -bsdb:1048/155/2_Microbiome:Unspiked-sewage-samples-(S1)-at-64-hours-(-20°C)_vs_Unspiked-sewage-samples-(S1)-at-16-hours-(-80°C)_DOWN NA 28196 469 375288 642 -bsdb:1048/156/1_Microbiome:Unspiked-sewage-samples-(S1)-at-16-hours-(5°C)_vs_Unspiked-sewage-samples-(S1)-at-16-hours-(-80°C)_UP NA 375288 838 -bsdb:1048/156/2_Microbiome:Unspiked-sewage-samples-(S1)-at-16-hours-(5°C)_vs_Unspiked-sewage-samples-(S1)-at-16-hours-(-80°C)_DOWN NA 28196 469 642 -bsdb:1048/157/1_Microbiome:Unspiked-sewage-samples-(S1)-at-64-hours-(5°C)_vs_Unspiked-sewage-samples-(S1)-at-16-hours-(-80°C)_UP NA 375288 -bsdb:1048/157/2_Microbiome:Unspiked-sewage-samples-(S1)-at-64-hours-(5°C)_vs_Unspiked-sewage-samples-(S1)-at-16-hours-(-80°C)_DOWN NA 28196 469 838 642 -bsdb:1048/158/1_Microbiome:Unspiked-sewage-samples-(S1)-at-16-hours-(22°C)_vs_Unspiked-sewage-samples-(S1)-at-16-hours-(-80°C)_UP NA 469 375288 838 -bsdb:1048/158/2_Microbiome:Unspiked-sewage-samples-(S1)-at-16-hours-(22°C)_vs_Unspiked-sewage-samples-(S1)-at-16-hours-(-80°C)_DOWN NA 28196 642 -bsdb:1048/159/1_Microbiome:Unspiked-sewage-samples-(S1)-at-64-hours-(22°C)_vs_Unspiked-sewage-samples-(S1)-at-16-hours-(-80°C)_UP NA 838 642 -bsdb:1048/159/2_Microbiome:Unspiked-sewage-samples-(S1)-at-64-hours-(22°C)_vs_Unspiked-sewage-samples-(S1)-at-16-hours-(-80°C)_DOWN NA 28196 469 375288 -bsdb:1048/160/1_Microbiome:Unspiked-sewage-samples-(S1)-at-16-hours-(-20°C)_vs_Unspiked-sewage-samples-(S1)-at-64-hours-(-80°C)_UP NA 28196 469 375288 642 -bsdb:1048/160/2_Microbiome:Unspiked-sewage-samples-(S1)-at-16-hours-(-20°C)_vs_Unspiked-sewage-samples-(S1)-at-64-hours-(-80°C)_DOWN NA 838 -bsdb:1048/161/1_Microbiome:Unspiked-sewage-samples-(S1)-at-64-hours-(-20°C)_vs_Unspiked-sewage-samples-(S1)-at-64-hours-(-80°C)_UP NA 28196 469 375288 838 -bsdb:1048/161/2_Microbiome:Unspiked-sewage-samples-(S1)-at-64-hours-(-20°C)_vs_Unspiked-sewage-samples-(S1)-at-64-hours-(-80°C)_DOWN NA 642 -bsdb:1048/162/1_Microbiome:Unspiked-sewage-samples-(S1)-at-16-hours-(5°C)_vs_Unspiked-sewage-samples-(S1)-at-64-hours-(-80°C)_UP NA 28196 469 375288 838 -bsdb:1048/162/2_Microbiome:Unspiked-sewage-samples-(S1)-at-16-hours-(5°C)_vs_Unspiked-sewage-samples-(S1)-at-64-hours-(-80°C)_DOWN NA 642 -bsdb:1048/207/1_Microbiome:Unspiked-sewage-samples-(S2)-at-16-hours-(5°C)_vs_Unspiked-sewage-samples-(S2)-at-64-hours-(-20°C)_UP NA 375288 -bsdb:1048/207/2_Microbiome:Unspiked-sewage-samples-(S2)-at-16-hours-(5°C)_vs_Unspiked-sewage-samples-(S2)-at-64-hours-(-20°C)_DOWN NA 28196 469 838 642 bsdb:1049/1/2_Atopic-eczema:cADtreat-dogs_vs_Healthy-dogs_DOWN NA 1663 1716 bsdb:1049/2/1_Atopic-eczema:cADpost-dogs_vs_cADpre-dogs_DOWN NA 1663 1386 1298 286 204447 bsdb:1049/2/2_Atopic-eczema:cADpost-dogs_vs_cADpre-dogs_UP NA 1716 1912216 407 1839 265 125216 295418 13687 1279 1301 @@ -3610,26 +3454,6 @@ bsdb:1049/41/2_Atopic-eczema:cADpost-dogs_vs_cADpre-dogs_UP NA 434 1912216 bsdb:1049/43/1_Atopic-eczema:cADpre-dogs_vs_Healthy-dogs_UP NA 1279 bsdb:1049/44/1_Atopic-eczema:cADtreat-dogs_vs_Healthy-dogs_DOWN NA 475 bsdb:1049/44/2_Atopic-eczema:cADtreat-dogs_vs_Healthy-dogs_UP NA 47670 -bsdb:1049/47/1_Atopic-eczema:cADpre-dogs_vs_Healthy-dogs_UP NA 1279 -bsdb:1049/48/1_Atopic-eczema:cADpost-dogs_vs_cADpre-dogs_DOWN NA 1279 -bsdb:1049/49/1_Atopic-eczema:cADpre-dogs_vs_Healthy-dogs_UP NA 1279 -bsdb:1049/50/1_Atopic-eczema:cADpre-dogs_vs_Healthy-dogs_UP NA 1279 -bsdb:1049/51/1_Atopic-eczema:cADpost-dogs_vs_cADpre-dogs_DOWN NA 1279 -bsdb:1049/52/1_Atopic-eczema:cADtreat-dogs_vs_cADpre-dogs_DOWN NA 1279 -bsdb:1049/53/1_Atopic-eczema:cADpre-dogs_vs_Healthy-dogs_UP NA 1279 -bsdb:1049/54/1_Atopic-eczema:cADpre-dogs_vs_Healthy-dogs_UP NA 1279 -bsdb:1049/55/1_Atopic-eczema:cADpost-dogs_vs_cADpre-dogs_DOWN NA 1279 -bsdb:1049/56/1_Atopic-eczema:cADtreat-dogs_vs_cADpre-dogs_DOWN NA 1279 -bsdb:1049/57/1_Atopic-eczema:cADpre-dogs_vs_Healthy-dogs_UP NA 1279 -bsdb:1049/58/1_Atopic-eczema:cADpost-dogs_vs_cADpre-dogs_DOWN NA 1279 -bsdb:1049/59/1_Atopic-eczema:Mitochondrial-haplogroups-C_vs_Mitochondrial-haplogroups-A_DOWN NA 207244 1301 2039240 572511 2749267 -bsdb:1049/60/1_Atopic-eczema:Mitochondrial-haplogroups-C_vs_Mitochondrial-haplogroups-A_DOWN NA 1663 816 -bsdb:1049/61/2_Atopic-eczema:Mitochondrial-haplogroups-C_vs_Mitochondrial-haplogroups-A_DOWN NA 295418 724 -bsdb:1049/62/1_Atopic-eczema:Mitochondrial-haplogroups-C_vs_Mitochondrial-haplogroups-A_UP NA 32207 195950 40323 -bsdb:1049/62/2_Atopic-eczema:Mitochondrial-haplogroups-C_vs_Mitochondrial-haplogroups-A_DOWN NA 237 745 -bsdb:1049/63/1_Atopic-eczema:Mitochondrial-haplogroups-C_vs_Mitochondrial-haplogroups-A_DOWN NA 841 -bsdb:1049/64/1_Atopic-eczema:Mitochondrial-haplogroups-C_vs_Mitochondrial-haplogroups-A_UP NA 724 -bsdb:1049/64/2_Atopic-eczema:Mitochondrial-haplogroups-C_vs_Mitochondrial-haplogroups-A_DOWN NA 816 1016 482 bsdb:1050/1/1_Taxonomic-microbiome-measurement:Esophagus_vs_Oral-cavity_UP NA 469 713 174708 572511 374 59732 33042 212791 407 165696 528 119852 20 1743 286 48736 1007 504481 165695 13687 1279 40323 1301 bsdb:1050/1/2_Taxonomic-microbiome-measurement:Esophagus_vs_Oral-cavity_DOWN NA 1654 2717 482 346096 970 bsdb:1051/1/1_Lung-cancer:Lung-cancer-(L-group)_vs_Benign-pulmonary-diseases-(N-group)_UP NA 816 diff --git a/bugsigdb_signatures_genus_taxname.gmt b/bugsigdb_signatures_genus_taxname.gmt index 01896423d..b851f093b 100644 --- a/bugsigdb_signatures_genus_taxname.gmt +++ b/bugsigdb_signatures_genus_taxname.gmt @@ -1,4 +1,4 @@ -# BugSigDB 2025-01-25_15:58_UTC, License: Creative Commons Attribution 4.0 International, URL: https://bugsigdb.org +# BugSigDB 2025-01-26_10:58_UTC, License: Creative Commons Attribution 4.0 International, URL: https://bugsigdb.org bsdb:1/1/1_Colorectal-adenoma:conventional-adenoma-cases_vs_controls_UP NA Actinomyces Corynebacterium Streptococcus Peptoniphilus Dorea Phascolarctobacterium Sutterella Lacticaseibacillus Bacillus bsdb:1/1/2_Colorectal-adenoma:conventional-adenoma-cases_vs_controls_DOWN NA Coprobacillus bsdb:1/2/1_Hyperplastic-Polyp:hyperplastic-polyp-cases_vs_controls_UP NA Anaerostipes Lacticaseibacillus @@ -4111,162 +4111,6 @@ bsdb:1048/44/1_Microbiome:Unspiked-pig-feces(P1)-at-16-hours-(5°C)_vs_Unspiked- bsdb:1048/44/2_Microbiome:Unspiked-pig-feces(P1)-at-16-hours-(5°C)_vs_Unspiked-pig-feces(P1)-at-16-hours-(-80°C)_DOWN NA Prevotella Phascolarctobacterium bsdb:1048/45/1_Microbiome:Unspiked-pig-feces(P1)-at-64-hours-(5°C)_vs_Unspiked-pig-feces(P1)-at-16-hours-(-80°C)_UP NA Treponema Faecalibacterium Phascolarctobacterium Roseburia bsdb:1048/45/2_Microbiome:Unspiked-pig-feces(P1)-at-64-hours-(5°C)_vs_Unspiked-pig-feces(P1)-at-16-hours-(-80°C)_DOWN NA Prevotella -bsdb:1048/46/1_Microbiome:Unspiked-pig-feces(P1)-at-16-hours-(22°C)_vs_Unspiked-pig-feces(P1)-at-16-hours-(-80°C)_UP NA Treponema Faecalibacterium Roseburia -bsdb:1048/46/2_Microbiome:Unspiked-pig-feces(P1)-at-16-hours-(22°C)_vs_Unspiked-pig-feces(P1)-at-16-hours-(-80°C)_DOWN NA Prevotella Phascolarctobacterium -bsdb:1048/47/1_Microbiome:Unspiked-pig-feces(P1)-at-64-hours-(22°C)_vs_Unspiked-pig-feces(P1)-at-16-hours-(-80°C)_UP NA Treponema Faecalibacterium -bsdb:1048/47/2_Microbiome:Unspiked-pig-feces(P1)-at-64-hours-(22°C)_vs_Unspiked-pig-feces(P1)-at-16-hours-(-80°C)_DOWN NA Prevotella -bsdb:1048/48/1_Microbiome:Unspiked-pig-feces(P1)-at-16-hours-(-20°C)_vs_Unspiked-pig-feces(P1)-at-64-hours-(-80°C)_UP NA Faecalibacterium Roseburia -bsdb:1048/48/2_Microbiome:Unspiked-pig-feces(P1)-at-16-hours-(-20°C)_vs_Unspiked-pig-feces(P1)-at-64-hours-(-80°C)_DOWN NA Prevotella Treponema Phascolarctobacterium -bsdb:1048/49/1_Microbiome:Unspiked-pig-feces(P1)-at-64-hours-(-20°C)_vs_Unspiked-pig-feces(P1)-at-64-hours-(-80°C)_UP NA Treponema Faecalibacterium Roseburia -bsdb:1048/49/2_Microbiome:Unspiked-pig-feces(P1)-at-64-hours-(-20°C)_vs_Unspiked-pig-feces(P1)-at-64-hours-(-80°C)_DOWN NA Prevotella Phascolarctobacterium -bsdb:1048/50/1_Microbiome:Unspiked-pig-feces(P1)-at-16-hours-(5°C)_vs_Unspiked-pig-feces(P1)-at-64-hours-(-80°C)_UP NA Treponema Faecalibacterium Roseburia -bsdb:1048/50/2_Microbiome:Unspiked-pig-feces(P1)-at-16-hours-(5°C)_vs_Unspiked-pig-feces(P1)-at-64-hours-(-80°C)_DOWN NA Prevotella Phascolarctobacterium -bsdb:1048/51/1_Microbiome:Unspiked-pig-feces(P1)-at-64-hours-(5°C)_vs_Unspiked-pig-feces(P1)-at-64-hours-(-80°C)_UP NA Faecalibacterium Roseburia -bsdb:1048/51/2_Microbiome:Unspiked-pig-feces(P1)-at-64-hours-(5°C)_vs_Unspiked-pig-feces(P1)-at-64-hours-(-80°C)_DOWN NA Prevotella Treponema Phascolarctobacterium -bsdb:1048/52/1_Microbiome:Unspiked-pig-feces(P1)-at-16-hours-(22°C)_vs_Unspiked-pig-feces(P1)-at-64-hours-(-80°C)_UP NA Treponema Faecalibacterium Phascolarctobacterium Roseburia -bsdb:1048/52/2_Microbiome:Unspiked-pig-feces(P1)-at-16-hours-(22°C)_vs_Unspiked-pig-feces(P1)-at-64-hours-(-80°C)_DOWN NA Prevotella -bsdb:1048/53/1_Microbiome:Unspiked-pig-feces(P1)-at-64-hours-(22°C)_vs_Unspiked-pig-feces(P1)-at-64-hours-(-80°C)_UP NA Treponema Faecalibacterium Phascolarctobacterium Roseburia -bsdb:1048/53/2_Microbiome:Unspiked-pig-feces(P1)-at-64-hours-(22°C)_vs_Unspiked-pig-feces(P1)-at-64-hours-(-80°C)_DOWN NA Prevotella -bsdb:1048/54/1_Microbiome:Unspiked-pig-feces(P1)-at-64-hours-(-20°C)_vs_Unspiked-pig-feces(P1)-at-16-hours-(-20°C)_UP NA Treponema -bsdb:1048/54/2_Microbiome:Unspiked-pig-feces(P1)-at-64-hours-(-20°C)_vs_Unspiked-pig-feces(P1)-at-16-hours-(-20°C)_DOWN NA Prevotella Phascolarctobacterium Faecalibacterium Roseburia -bsdb:1048/55/1_Microbiome:Unspiked-pig-feces(P1)-at-16-hours-(5°C)_vs_Unspiked-pig-feces(P1)-at-16-hours-(-20°C)_UP NA Treponema Faecalibacterium Roseburia -bsdb:1048/55/2_Microbiome:Unspiked-pig-feces(P1)-at-16-hours-(5°C)_vs_Unspiked-pig-feces(P1)-at-16-hours-(-20°C)_DOWN NA Prevotella Phascolarctobacterium -bsdb:1048/56/1_Microbiome:Unspiked-pig-feces(P1)-at-64-hours-(5°C)_vs_Unspiked-pig-feces(P1)-at-16-hours-(-20°C)_UP NA Treponema Faecalibacterium Phascolarctobacterium Roseburia -bsdb:1048/56/2_Microbiome:Unspiked-pig-feces(P1)-at-64-hours-(5°C)_vs_Unspiked-pig-feces(P1)-at-16-hours-(-20°C)_DOWN NA Prevotella -bsdb:1048/57/1_Microbiome:Unspiked-pig-feces(P1)-at-16-hours-(22°C)_vs_Unspiked-pig-feces(P1)-at-16-hours-(-20°C)_UP NA Treponema Faecalibacterium Phascolarctobacterium Roseburia -bsdb:1048/57/2_Microbiome:Unspiked-pig-feces(P1)-at-16-hours-(22°C)_vs_Unspiked-pig-feces(P1)-at-16-hours-(-20°C)_DOWN NA Prevotella -bsdb:1048/58/1_Microbiome:Unspiked-pig-feces(P1)-at-64-hours-(22°C)_vs_Unspiked-pig-feces(P1)-at-16-hours-(-20°C)_UP NA Treponema Faecalibacterium Phascolarctobacterium Roseburia -bsdb:1048/58/2_Microbiome:Unspiked-pig-feces(P1)-at-64-hours-(22°C)_vs_Unspiked-pig-feces(P1)-at-16-hours-(-20°C)_DOWN NA Prevotella -bsdb:1048/62/1_Microbiome:Unspiked-pig-feces(P1)-at-16-hours-(5°C)_vs_Unspiked-pig-feces(P1)-at-64-hours-(-20°C)_UP NA Treponema Faecalibacterium -bsdb:1048/62/2_Microbiome:Unspiked-pig-feces(P1)-at-16-hours-(5°C)_vs_Unspiked-pig-feces(P1)-at-64-hours-(-20°C)_DOWN NA Prevotella Phascolarctobacterium Roseburia -bsdb:1048/64/1_Microbiome:Unspiked-pig-feces(P1)-at-64-hours-(5°C)_vs_Unspiked-pig-feces(P1)-at-64-hours-(-20°C)_UP NA Faecalibacterium Phascolarctobacterium Roseburia -bsdb:1048/64/2_Microbiome:Unspiked-pig-feces(P1)-at-64-hours-(5°C)_vs_Unspiked-pig-feces(P1)-at-64-hours-(-20°C)_DOWN NA Prevotella Treponema -bsdb:1048/65/1_Microbiome:Unspiked-pig-feces(P1)-at-16-hours-(22°C)_vs_Unspiked-pig-feces(P1)-at-64-hours-(-20°C)_UP NA Treponema Faecalibacterium Phascolarctobacterium Roseburia -bsdb:1048/65/2_Microbiome:Unspiked-pig-feces(P1)-at-16-hours-(22°C)_vs_Unspiked-pig-feces(P1)-at-64-hours-(-20°C)_DOWN NA Prevotella -bsdb:1048/66/1_Microbiome:Unspiked-pig-feces(P1)-at-64-hours-(22°C)_vs_Unspiked-pig-feces(P1)-at-64-hours-(-20°C)_UP NA Treponema Phascolarctobacterium Faecalibacterium Roseburia -bsdb:1048/66/2_Microbiome:Unspiked-pig-feces(P1)-at-64-hours-(22°C)_vs_Unspiked-pig-feces(P1)-at-64-hours-(-20°C)_DOWN NA Prevotella -bsdb:1048/67/1_Microbiome:Unspiked-pig-feces(P1)-at-64-hours-(5°C)_vs_Unspiked-pig-feces(P1)-at-16-hours-(5°C)_UP NA Treponema Faecalibacterium Roseburia -bsdb:1048/67/2_Microbiome:Unspiked-pig-feces(P1)-at-64-hours-(5°C)_vs_Unspiked-pig-feces(P1)-at-16-hours-(5°C)_DOWN NA Prevotella Phascolarctobacterium -bsdb:1048/68/1_Microbiome:Unspiked-pig-feces(P1)-at-16-hours-(22°C)_vs_Unspiked-pig-feces(P1)-at-16-hours-(5°C)_UP NA Treponema Faecalibacterium Phascolarctobacterium Roseburia -bsdb:1048/68/2_Microbiome:Unspiked-pig-feces(P1)-at-16-hours-(22°C)_vs_Unspiked-pig-feces(P1)-at-16-hours-(5°C)_DOWN NA Prevotella -bsdb:1048/69/1_Microbiome:Unspiked-pig-feces(P1)-at-64-hours-(22°C)_vs_Unspiked-pig-feces(P1)-at-16-hours-(5°C)_UP NA Faecalibacterium Phascolarctobacterium Roseburia -bsdb:1048/69/2_Microbiome:Unspiked-pig-feces(P1)-at-64-hours-(22°C)_vs_Unspiked-pig-feces(P1)-at-16-hours-(5°C)_DOWN NA Prevotella Treponema -bsdb:1048/70/1_Microbiome:Unspiked-pig-feces(P1)-at-16-hours-(22°C)_vs_Unspiked-pig-feces(P1)-at-64-hours-(5°C)_UP NA Treponema Faecalibacterium -bsdb:1048/70/2_Microbiome:Unspiked-pig-feces(P1)-at-16-hours-(22°C)_vs_Unspiked-pig-feces(P1)-at-64-hours-(5°C)_DOWN NA Prevotella Phascolarctobacterium Roseburia -bsdb:1048/71/1_Microbiome:Unspiked-pig-feces(P1)-at-64-hours-(22°C)_vs_Unspiked-pig-feces(P1)-at-64-hours-(5°C)_UP NA Treponema Faecalibacterium -bsdb:1048/71/2_Microbiome:Unspiked-pig-feces(P1)-at-64-hours-(22°C)_vs_Unspiked-pig-feces(P1)-at-64-hours-(5°C)_DOWN NA Prevotella Phascolarctobacterium Roseburia -bsdb:1048/72/1_Microbiome:Unspiked-pig-feces(P1)-at-64-hours-(22°C)_vs_Unspiked-pig-feces(P1)-at-16-hours-(22°C)_UP NA Treponema Faecalibacterium -bsdb:1048/72/2_Microbiome:Unspiked-pig-feces(P1)-at-64-hours-(22°C)_vs_Unspiked-pig-feces(P1)-at-16-hours-(22°C)_DOWN NA Prevotella Phascolarctobacterium Roseburia -bsdb:1048/109/1_Microbiome:Unspiked-pig-feces(P2)-at-16-hours-(-80°C)_vs_Unspiked-pig-feces(P2)-at-0-hour_UP NA Phascolarctobacterium Prevotella Roseburia -bsdb:1048/109/2_Microbiome:Unspiked-pig-feces(P2)-at-16-hours-(-80°C)_vs_Unspiked-pig-feces(P2)-at-0-hour_DOWN NA Faecalibacterium Treponema -bsdb:1048/110/1_Microbiome:Unspiked-pig-feces(P2)-at-64-hours-(-80°C)_vs_Unspiked-pig-feces(P2)-at-0-hour_UP NA Prevotella -bsdb:1048/110/2_Microbiome:Unspiked-pig-feces(P2)-at-64-hours-(-80°C)_vs_Unspiked-pig-feces(P2)-at-0-hour_DOWN NA Faecalibacterium Phascolarctobacterium Roseburia Treponema -bsdb:1048/111/1_Microbiome:Unspiked-pig-feces(P2)-at-16-hours-(-20°C)_vs_Unspiked-pig-feces(P2)-at-0-hour_UP NA Prevotella Phascolarctobacterium Roseburia -bsdb:1048/111/2_Microbiome:Unspiked-pig-feces(P2)-at-16-hours-(-20°C)_vs_Unspiked-pig-feces(P2)-at-0-hour_DOWN NA Treponema Faecalibacterium -bsdb:1048/112/1_Microbiome:Unspiked-pig-feces(P2)-at-64-hours-(-20°C)_vs_Unspiked-pig-feces(P2)-at-0-hour_UP NA Prevotella Phascolarctobacterium -bsdb:1048/112/2_Microbiome:Unspiked-pig-feces(P2)-at-64-hours-(-20°C)_vs_Unspiked-pig-feces(P2)-at-0-hour_DOWN NA Treponema Faecalibacterium Roseburia -bsdb:1048/113/1_Microbiome:Unspiked-pig-feces(P2)-at-16-hours-(5°C)_vs_Unspiked-pig-feces(P2)-at-0-hour_UP NA Faecalibacterium Phascolarctobacterium Roseburia -bsdb:1048/113/2_Microbiome:Unspiked-pig-feces(P2)-at-16-hours-(5°C)_vs_Unspiked-pig-feces(P2)-at-0-hour_DOWN NA Prevotella Treponema -bsdb:1048/114/1_Microbiome:Unspiked-pig-feces(P2)-at-64-hours-(5°C)_vs_Unspiked-pig-feces(P2)-at-0-hour_UP NA Faecalibacterium Phascolarctobacterium Roseburia -bsdb:1048/114/2_Microbiome:Unspiked-pig-feces(P2)-at-64-hours-(5°C)_vs_Unspiked-pig-feces(P2)-at-0-hour_DOWN NA Prevotella Treponema -bsdb:1048/115/1_Microbiome:Unspiked-pig-feces(P2)-at-16-hours-(22°C)_vs_Unspiked-pig-feces(P2)-at-0-hour_UP NA Faecalibacterium Phascolarctobacterium Roseburia -bsdb:1048/115/2_Microbiome:Unspiked-pig-feces(P2)-at-16-hours-(22°C)_vs_Unspiked-pig-feces(P2)-at-0-hour_DOWN NA Prevotella Treponema -bsdb:1048/116/1_Microbiome:Unspiked-pig-feces(P2)-at-64-hours-(22°C)_vs_Unspiked-pig-feces(P2)-at-0-hour_UP NA Faecalibacterium Phascolarctobacterium Roseburia -bsdb:1048/116/2_Microbiome:Unspiked-pig-feces(P2)-at-64-hours-(22°C)_vs_Unspiked-pig-feces(P2)-at-0-hour_DOWN NA Prevotella Treponema -bsdb:1048/117/1_Microbiome:Unspiked-pig-feces(P2)-at-64-hours-(80°C)_vs_Unspiked-pig-feces(P2)-at-16-hours-(-80°C)_UP NA Faecalibacterium -bsdb:1048/117/2_Microbiome:Unspiked-pig-feces(P2)-at-64-hours-(80°C)_vs_Unspiked-pig-feces(P2)-at-16-hours-(-80°C)_DOWN NA Prevotella Treponema Phascolarctobacterium Roseburia -bsdb:1048/118/1_Microbiome:Unspiked-pig-feces(P2)-at-16-hours-(-20°C)_vs_Unspiked-pig-feces(P2)-at-16-hours-(-80°C)_UP NA Prevotella Phascolarctobacterium -bsdb:1048/118/2_Microbiome:Unspiked-pig-feces(P2)-at-16-hours-(-20°C)_vs_Unspiked-pig-feces(P2)-at-16-hours-(-80°C)_DOWN NA Treponema Faecalibacterium Roseburia -bsdb:1048/119/1_Microbiome:Unspiked-pig-feces(P2)-at-64-hours-(-20°C)_vs_Unspiked-pig-feces(P2)-at-16-hours-(-80°C)_UP NA Prevotella Phascolarctobacterium -bsdb:1048/119/2_Microbiome:Unspiked-pig-feces(P2)-at-64-hours-(-20°C)_vs_Unspiked-pig-feces(P2)-at-16-hours-(-80°C)_DOWN NA Treponema Faecalibacterium Roseburia -bsdb:1048/120/1_Microbiome:Unspiked-pig-feces(P2)-at-16-hours-(5°C)_vs_Unspiked-pig-feces(P2)-at-16-hours-(-80°C)_UP NA Treponema Faecalibacterium Phascolarctobacterium Roseburia -bsdb:1048/120/2_Microbiome:Unspiked-pig-feces(P2)-at-16-hours-(5°C)_vs_Unspiked-pig-feces(P2)-at-16-hours-(-80°C)_DOWN NA Prevotella -bsdb:1048/121/1_Microbiome:Unspiked-pig-feces(P2)-at-64-hours-(5°C)_vs_Unspiked-pig-feces(P2)-at-16-hours-(-80°C)_UP NA Treponema Faecalibacterium Phascolarctobacterium Roseburia -bsdb:1048/121/2_Microbiome:Unspiked-pig-feces(P2)-at-64-hours-(5°C)_vs_Unspiked-pig-feces(P2)-at-16-hours-(-80°C)_DOWN NA Prevotella -bsdb:1048/122/1_Microbiome:Unspiked-pig-feces(P2)-at-16-hours-(22°C)_vs_Unspiked-pig-feces(P2)-at-16-hours-(-80°C)_UP NA Treponema Faecalibacterium Phascolarctobacterium Roseburia -bsdb:1048/122/2_Microbiome:Unspiked-pig-feces(P2)-at-16-hours-(22°C)_vs_Unspiked-pig-feces(P2)-at-16-hours-(-80°C)_DOWN NA Prevotella -bsdb:1048/123/1_Microbiome:Unspiked-pig-feces(P2)-at-64-hours-(22°C)_vs_Unspiked-pig-feces(P2)-at-16-hours-(-80°C)_UP NA Treponema Faecalibacterium Phascolarctobacterium Roseburia -bsdb:1048/123/2_Microbiome:Unspiked-pig-feces(P2)-at-64-hours-(22°C)_vs_Unspiked-pig-feces(P2)-at-16-hours-(-80°C)_DOWN NA Prevotella -bsdb:1048/124/1_Microbiome:Unspiked-pig-feces(P2)-at-16-hours-(-20°C)_vs_Unspiked-pig-feces(P2)-at-64-hours-(-80°C)_UP NA Prevotella Treponema Phascolarctobacterium Roseburia -bsdb:1048/124/2_Microbiome:Unspiked-pig-feces(P2)-at-16-hours-(-20°C)_vs_Unspiked-pig-feces(P2)-at-64-hours-(-80°C)_DOWN NA Faecalibacterium -bsdb:1048/125/1_Microbiome:Unspiked-pig-feces(P2)-at-64-hours-(-20°C)_vs_Unspiked-pig-feces(P2)-at-64-hours-(-80°C)_UP NA Prevotella Treponema Phascolarctobacterium -bsdb:1048/125/2_Microbiome:Unspiked-pig-feces(P2)-at-64-hours-(-20°C)_vs_Unspiked-pig-feces(P2)-at-64-hours-(-80°C)_DOWN NA Faecalibacterium Roseburia -bsdb:1048/126/1_Microbiome:Unspiked-pig-feces(P2)-at-16-hours-(5°C)_vs_Unspiked-pig-feces(P2)-at-64-hours-(-80°C)_UP NA Treponema Faecalibacterium Phascolarctobacterium Roseburia -bsdb:1048/126/2_Microbiome:Unspiked-pig-feces(P2)-at-16-hours-(5°C)_vs_Unspiked-pig-feces(P2)-at-64-hours-(-80°C)_DOWN NA Prevotella -bsdb:1048/127/1_Microbiome:Unspiked-pig-feces(P2)-at-64-hours-(5°C)_vs_Unspiked-pig-feces(P2)-at-64-hours-(-80°C)_UP NA Faecalibacterium Phascolarctobacterium Roseburia Treponema -bsdb:1048/127/2_Microbiome:Unspiked-pig-feces(P2)-at-64-hours-(5°C)_vs_Unspiked-pig-feces(P2)-at-64-hours-(-80°C)_DOWN NA Prevotella -bsdb:1048/128/1_Microbiome:Unspiked-pig-feces(P2)-at-16-hours-(22°C)_vs_Unspiked-pig-feces(P2)-at-64-hours-(-80°C)_UP NA Treponema Faecalibacterium Phascolarctobacterium Roseburia -bsdb:1048/128/2_Microbiome:Unspiked-pig-feces(P2)-at-16-hours-(22°C)_vs_Unspiked-pig-feces(P2)-at-64-hours-(-80°C)_DOWN NA Prevotella -bsdb:1048/129/1_Microbiome:Unspiked-pig-feces(P2)-at-64-hours-(22°C)_vs_Unspiked-pig-feces(P2)-at-64-hours-(-80°C)_UP NA Faecalibacterium Phascolarctobacterium Treponema Roseburia -bsdb:1048/129/2_Microbiome:Unspiked-pig-feces(P2)-at-64-hours-(22°C)_vs_Unspiked-pig-feces(P2)-at-64-hours-(-80°C)_DOWN NA Prevotella -bsdb:1048/130/1_Microbiome:Unspiked-pig-feces(P2)-at-64-hours-(-20°C)_vs_Unspiked-pig-feces(P2)-at-16-hours-(-20°C)_UP NA Phascolarctobacterium -bsdb:1048/130/2_Microbiome:Unspiked-pig-feces(P2)-at-64-hours-(-20°C)_vs_Unspiked-pig-feces(P2)-at-16-hours-(-20°C)_DOWN NA Prevotella Treponema Faecalibacterium Roseburia -bsdb:1048/131/1_Microbiome:Unspiked-pig-feces(P2)-at-16-hours-(5°C)_vs_Unspiked-pig-feces(P2)-at-16-hours-(-20°C)_UP NA Treponema Faecalibacterium Phascolarctobacterium Roseburia -bsdb:1048/131/2_Microbiome:Unspiked-pig-feces(P2)-at-16-hours-(5°C)_vs_Unspiked-pig-feces(P2)-at-16-hours-(-20°C)_DOWN NA Prevotella -bsdb:1048/132/1_Microbiome:Unspiked-pig-feces(P2)-at-64-hours-(5°C)_vs_Unspiked-pig-feces(P2)-at-16-hours-(-20°C)_UP NA Treponema Faecalibacterium Phascolarctobacterium Roseburia -bsdb:1048/132/2_Microbiome:Unspiked-pig-feces(P2)-at-64-hours-(5°C)_vs_Unspiked-pig-feces(P2)-at-16-hours-(-20°C)_DOWN NA Prevotella -bsdb:1048/133/1_Microbiome:Unspiked-pig-feces(P2)-at-16-hours-(22°C)_vs_Unspiked-pig-feces(P2)-at-16-hours-(-20°C)_UP NA Treponema Faecalibacterium Phascolarctobacterium Roseburia -bsdb:1048/133/2_Microbiome:Unspiked-pig-feces(P2)-at-16-hours-(22°C)_vs_Unspiked-pig-feces(P2)-at-16-hours-(-20°C)_DOWN NA Prevotella -bsdb:1048/134/1_Microbiome:Unspiked-pig-feces(P2)-at-64-hours-(22°C)_vs_Unspiked-pig-feces(P2)-at-16-hours-(-20°C)_UP NA Treponema Faecalibacterium Phascolarctobacterium Roseburia -bsdb:1048/134/2_Microbiome:Unspiked-pig-feces(P2)-at-64-hours-(22°C)_vs_Unspiked-pig-feces(P2)-at-16-hours-(-20°C)_DOWN NA Prevotella -bsdb:1048/135/1_Microbiome:Unspiked-pig-feces(P2)-at-16-hours-(5°C)_vs_Unspiked-pig-feces(P2)-at-64-hours-(-20°C)_UP NA Treponema Faecalibacterium Roseburia -bsdb:1048/135/2_Microbiome:Unspiked-pig-feces(P2)-at-16-hours-(5°C)_vs_Unspiked-pig-feces(P2)-at-64-hours-(-20°C)_DOWN NA Prevotella Phascolarctobacterium -bsdb:1048/136/1_Microbiome:Unspiked-pig-feces(P2)-at-64-hours-(5°C)_vs_Unspiked-pig-feces(P2)-at-64-hours-(-20°C)_UP NA Treponema Faecalibacterium Phascolarctobacterium Roseburia -bsdb:1048/136/2_Microbiome:Unspiked-pig-feces(P2)-at-64-hours-(5°C)_vs_Unspiked-pig-feces(P2)-at-64-hours-(-20°C)_DOWN NA Prevotella -bsdb:1048/137/1_Microbiome:Unspiked-pig-feces(P2)-at-16-hours-(22°C)_vs_Unspiked-pig-feces(P2)-at-64-hours-(-20°C)_UP NA Faecalibacterium Treponema Roseburia Phascolarctobacterium -bsdb:1048/137/2_Microbiome:Unspiked-pig-feces(P2)-at-16-hours-(22°C)_vs_Unspiked-pig-feces(P2)-at-64-hours-(-20°C)_DOWN NA Prevotella -bsdb:1048/138/1_Microbiome:Unspiked-pig-feces(P2)-at-64-hours-(22°C)_vs_Unspiked-pig-feces(P2)-at-64-hours-(-20°C)_UP NA Treponema Faecalibacterium Phascolarctobacterium Roseburia -bsdb:1048/138/2_Microbiome:Unspiked-pig-feces(P2)-at-64-hours-(22°C)_vs_Unspiked-pig-feces(P2)-at-64-hours-(-20°C)_DOWN NA Prevotella -bsdb:1048/139/1_Microbiome:Unspiked-pig-feces(P2)-at-64-hours-(5°C)_vs_Unspiked-pig-feces(P2)-at-16-hours-(5°C)_UP NA Faecalibacterium Phascolarctobacterium Roseburia -bsdb:1048/139/2_Microbiome:Unspiked-pig-feces(P2)-at-64-hours-(5°C)_vs_Unspiked-pig-feces(P2)-at-16-hours-(5°C)_DOWN NA Prevotella Treponema -bsdb:1048/140/1_Microbiome:Unspiked-pig-feces(P2)-at-16-hours-(22°C)_vs_Unspiked-pig-feces(P2)-at-16-hours-(5°C)_UP NA Faecalibacterium Phascolarctobacterium Roseburia -bsdb:1048/140/2_Microbiome:Unspiked-pig-feces(P2)-at-16-hours-(22°C)_vs_Unspiked-pig-feces(P2)-at-16-hours-(5°C)_DOWN NA Prevotella Treponema -bsdb:1048/141/1_Microbiome:Unspiked-pig-feces(P2)-at-64-hours-(22°C)_vs_Unspiked-pig-feces(P2)-at-16-hours-(5°C)_UP NA Faecalibacterium Phascolarctobacterium Roseburia -bsdb:1048/141/2_Microbiome:Unspiked-pig-feces(P2)-at-64-hours-(22°C)_vs_Unspiked-pig-feces(P2)-at-16-hours-(5°C)_DOWN NA Prevotella Treponema -bsdb:1048/142/1_Microbiome:Unspiked-pig-feces(P2)-at-16-hours-(22°C)_vs_Unspiked-pig-feces(P2)-at-64-hours-(5°C)_UP NA Prevotella Treponema -bsdb:1048/142/2_Microbiome:Unspiked-pig-feces(P2)-at-16-hours-(22°C)_vs_Unspiked-pig-feces(P2)-at-64-hours-(5°C)_DOWN NA Faecalibacterium Phascolarctobacterium Roseburia -bsdb:1048/143/1_Microbiome:Unspiked-pig-feces(P2)-at-64-hours-(22°C)_vs_Unspiked-pig-feces(P2)-at-64-hours-(5°C)_UP NA Treponema Phascolarctobacterium -bsdb:1048/143/2_Microbiome:Unspiked-pig-feces(P2)-at-64-hours-(22°C)_vs_Unspiked-pig-feces(P2)-at-64-hours-(5°C)_DOWN NA Prevotella Faecalibacterium Roseburia -bsdb:1048/144/1_Microbiome:Unspiked-pig-feces(P2)-at-64-hours-(22°C)_vs_Unspiked-pig-feces(P2)-at-16-hours-(22°C)_UP NA Treponema Phascolarctobacterium Roseburia -bsdb:1048/144/2_Microbiome:Unspiked-pig-feces(P2)-at-64-hours-(22°C)_vs_Unspiked-pig-feces(P2)-at-16-hours-(22°C)_DOWN NA Faecalibacterium Prevotella -bsdb:1048/145/1_Microbiome:Unspiked-sewage-samples-(S1)-at-16-hours-(-80°C)_vs_Unspiked-sewage-samples-(S1)-at-0-hours_UP NA Arcobacter Prevotella Aeromonas -bsdb:1048/145/2_Microbiome:Unspiked-sewage-samples-(S1)-at-16-hours-(-80°C)_vs_Unspiked-sewage-samples-(S1)-at-0-hours_DOWN NA Acinetobacter Parabacteroides -bsdb:1048/146/1_Microbiome:Unspiked-sewage-samples-(S1)-at-64-hours-(-80°C)_vs_Unspiked-sewage-samples-(S1)-at-0-hours_UP NA Arcobacter Aeromonas -bsdb:1048/146/2_Microbiome:Unspiked-sewage-samples-(S1)-at-64-hours-(-80°C)_vs_Unspiked-sewage-samples-(S1)-at-0-hours_DOWN NA Acinetobacter Parabacteroides Prevotella -bsdb:1048/147/1_Microbiome:Unspiked-sewage-samples-(S1)-at-16-hours-(-20°C)_vs_Unspiked-sewage-samples-(S1)-at-0-hours_UP NA Arcobacter Aeromonas -bsdb:1048/147/2_Microbiome:Unspiked-sewage-samples-(S1)-at-16-hours-(-20°C)_vs_Unspiked-sewage-samples-(S1)-at-0-hours_DOWN NA Acinetobacter Parabacteroides Prevotella -bsdb:1048/148/1_Microbiome:Unspiked-sewage-samples-(S1)-at-64-hours-(-20°C)_vs_Unspiked-sewage-samples-(S1)-at-0-hours_UP NA Arcobacter Aeromonas Prevotella -bsdb:1048/148/2_Microbiome:Unspiked-sewage-samples-(S1)-at-64-hours-(-20°C)_vs_Unspiked-sewage-samples-(S1)-at-0-hours_DOWN NA Parabacteroides Acinetobacter -bsdb:1048/149/1_Microbiome:Unspiked-sewage-samples-(S1)-at-16-hours-(5°C)_vs_Unspiked-sewage-samples-(S1)-at-0-hours_UP NA Arcobacter Prevotella Aeromonas -bsdb:1048/149/2_Microbiome:Unspiked-sewage-samples-(S1)-at-16-hours-(5°C)_vs_Unspiked-sewage-samples-(S1)-at-0-hours_DOWN NA Acinetobacter Parabacteroides -bsdb:1048/150/1_Microbiome:Unspiked-sewage-samples-(S1)-at-64-hours-(5°C)_vs_Unspiked-sewage-samples-(S1)-at-0-hours_UP NA Parabacteroides Prevotella Aeromonas -bsdb:1048/150/2_Microbiome:Unspiked-sewage-samples-(S1)-at-64-hours-(5°C)_vs_Unspiked-sewage-samples-(S1)-at-0-hours_DOWN NA Arcobacter Acinetobacter -bsdb:1048/151/1_Microbiome:Unspiked-sewage-samples-(S1)-at-16-hours-(22°C)_vs_Unspiked-sewage-samples-(S1)-at-0-hours_UP NA Parabacteroides Prevotella Aeromonas -bsdb:1048/151/2_Microbiome:Unspiked-sewage-samples-(S1)-at-16-hours-(22°C)_vs_Unspiked-sewage-samples-(S1)-at-0-hours_DOWN NA Arcobacter Acinetobacter -bsdb:1048/152/1_Microbiome:Unspiked-sewage-samples-(S1)-at-64-hours-(22°C)_vs_Unspiked-sewage-samples-(S1)-at-0-hours_UP NA Prevotella Aeromonas -bsdb:1048/152/2_Microbiome:Unspiked-sewage-samples-(S1)-at-64-hours-(22°C)_vs_Unspiked-sewage-samples-(S1)-at-0-hours_DOWN NA Arcobacter Acinetobacter Parabacteroides -bsdb:1048/153/1_Microbiome:Unspiked-sewage-samples-(S1)-at-64-hours-(-80°C)_vs_Unspiked-sewage-samples-(S1)-at-16-hours-(-80°C)_UP NA Aeromonas -bsdb:1048/153/2_Microbiome:Unspiked-sewage-samples-(S1)-at-64-hours-(-80°C)_vs_Unspiked-sewage-samples-(S1)-at-16-hours-(-80°C)_DOWN NA Arcobacter Acinetobacter Parabacteroides Prevotella -bsdb:1048/154/1_Microbiome:Unspiked-sewage-samples-(S1)-at-16-hours-(-20°C)_vs_Unspiked-sewage-samples-(S1)-at-16-hours-(-80°C)_UP NA Acinetobacter -bsdb:1048/154/2_Microbiome:Unspiked-sewage-samples-(S1)-at-16-hours-(-20°C)_vs_Unspiked-sewage-samples-(S1)-at-16-hours-(-80°C)_DOWN NA Arcobacter Parabacteroides Prevotella Aeromonas -bsdb:1048/155/1_Microbiome:Unspiked-sewage-samples-(S1)-at-64-hours-(-20°C)_vs_Unspiked-sewage-samples-(S1)-at-16-hours-(-80°C)_UP NA Prevotella -bsdb:1048/155/2_Microbiome:Unspiked-sewage-samples-(S1)-at-64-hours-(-20°C)_vs_Unspiked-sewage-samples-(S1)-at-16-hours-(-80°C)_DOWN NA Arcobacter Acinetobacter Parabacteroides Aeromonas -bsdb:1048/156/1_Microbiome:Unspiked-sewage-samples-(S1)-at-16-hours-(5°C)_vs_Unspiked-sewage-samples-(S1)-at-16-hours-(-80°C)_UP NA Parabacteroides Prevotella -bsdb:1048/156/2_Microbiome:Unspiked-sewage-samples-(S1)-at-16-hours-(5°C)_vs_Unspiked-sewage-samples-(S1)-at-16-hours-(-80°C)_DOWN NA Arcobacter Acinetobacter Aeromonas -bsdb:1048/157/1_Microbiome:Unspiked-sewage-samples-(S1)-at-64-hours-(5°C)_vs_Unspiked-sewage-samples-(S1)-at-16-hours-(-80°C)_UP NA Parabacteroides -bsdb:1048/157/2_Microbiome:Unspiked-sewage-samples-(S1)-at-64-hours-(5°C)_vs_Unspiked-sewage-samples-(S1)-at-16-hours-(-80°C)_DOWN NA Arcobacter Acinetobacter Prevotella Aeromonas -bsdb:1048/158/1_Microbiome:Unspiked-sewage-samples-(S1)-at-16-hours-(22°C)_vs_Unspiked-sewage-samples-(S1)-at-16-hours-(-80°C)_UP NA Acinetobacter Parabacteroides Prevotella -bsdb:1048/158/2_Microbiome:Unspiked-sewage-samples-(S1)-at-16-hours-(22°C)_vs_Unspiked-sewage-samples-(S1)-at-16-hours-(-80°C)_DOWN NA Arcobacter Aeromonas -bsdb:1048/159/1_Microbiome:Unspiked-sewage-samples-(S1)-at-64-hours-(22°C)_vs_Unspiked-sewage-samples-(S1)-at-16-hours-(-80°C)_UP NA Prevotella Aeromonas -bsdb:1048/159/2_Microbiome:Unspiked-sewage-samples-(S1)-at-64-hours-(22°C)_vs_Unspiked-sewage-samples-(S1)-at-16-hours-(-80°C)_DOWN NA Arcobacter Acinetobacter Parabacteroides -bsdb:1048/160/1_Microbiome:Unspiked-sewage-samples-(S1)-at-16-hours-(-20°C)_vs_Unspiked-sewage-samples-(S1)-at-64-hours-(-80°C)_UP NA Arcobacter Acinetobacter Parabacteroides Aeromonas -bsdb:1048/160/2_Microbiome:Unspiked-sewage-samples-(S1)-at-16-hours-(-20°C)_vs_Unspiked-sewage-samples-(S1)-at-64-hours-(-80°C)_DOWN NA Prevotella -bsdb:1048/161/1_Microbiome:Unspiked-sewage-samples-(S1)-at-64-hours-(-20°C)_vs_Unspiked-sewage-samples-(S1)-at-64-hours-(-80°C)_UP NA Arcobacter Acinetobacter Parabacteroides Prevotella -bsdb:1048/161/2_Microbiome:Unspiked-sewage-samples-(S1)-at-64-hours-(-20°C)_vs_Unspiked-sewage-samples-(S1)-at-64-hours-(-80°C)_DOWN NA Aeromonas -bsdb:1048/162/1_Microbiome:Unspiked-sewage-samples-(S1)-at-16-hours-(5°C)_vs_Unspiked-sewage-samples-(S1)-at-64-hours-(-80°C)_UP NA Arcobacter Acinetobacter Parabacteroides Prevotella -bsdb:1048/162/2_Microbiome:Unspiked-sewage-samples-(S1)-at-16-hours-(5°C)_vs_Unspiked-sewage-samples-(S1)-at-64-hours-(-80°C)_DOWN NA Aeromonas -bsdb:1048/207/1_Microbiome:Unspiked-sewage-samples-(S2)-at-16-hours-(5°C)_vs_Unspiked-sewage-samples-(S2)-at-64-hours-(-20°C)_UP NA Parabacteroides -bsdb:1048/207/2_Microbiome:Unspiked-sewage-samples-(S2)-at-16-hours-(5°C)_vs_Unspiked-sewage-samples-(S2)-at-64-hours-(-20°C)_DOWN NA Arcobacter Acinetobacter Prevotella Aeromonas bsdb:1049/1/2_Atopic-eczema:cADtreat-dogs_vs_Healthy-dogs_DOWN NA Arthrobacter Corynebacterium bsdb:1049/2/1_Atopic-eczema:cADpost-dogs_vs_cADpre-dogs_DOWN NA Arthrobacter Bacillus Deinococcus Pseudomonas Skermanella bsdb:1049/2/2_Atopic-eczema:cADpost-dogs_vs_cADpre-dogs_UP NA Corynebacterium Cutibacterium Methylobacterium Nocardioides Paracoccus Roseomonas Rubellimicrobium Sphingomonas Staphylococcus Streptococcus @@ -4302,26 +4146,6 @@ bsdb:1049/41/2_Atopic-eczema:cADpost-dogs_vs_cADpre-dogs_UP NA Acetobacter Cutib bsdb:1049/43/1_Atopic-eczema:cADpre-dogs_vs_Healthy-dogs_UP NA Staphylococcus bsdb:1049/44/1_Atopic-eczema:cADtreat-dogs_vs_Healthy-dogs_DOWN NA Moraxella bsdb:1049/44/2_Atopic-eczema:cADtreat-dogs_vs_Healthy-dogs_UP NA Lautropia -bsdb:1049/47/1_Atopic-eczema:cADpre-dogs_vs_Healthy-dogs_UP NA Staphylococcus -bsdb:1049/48/1_Atopic-eczema:cADpost-dogs_vs_cADpre-dogs_DOWN NA Staphylococcus -bsdb:1049/49/1_Atopic-eczema:cADpre-dogs_vs_Healthy-dogs_UP NA Staphylococcus -bsdb:1049/50/1_Atopic-eczema:cADpre-dogs_vs_Healthy-dogs_UP NA Staphylococcus -bsdb:1049/51/1_Atopic-eczema:cADpost-dogs_vs_cADpre-dogs_DOWN NA Staphylococcus -bsdb:1049/52/1_Atopic-eczema:cADtreat-dogs_vs_cADpre-dogs_DOWN NA Staphylococcus -bsdb:1049/53/1_Atopic-eczema:cADpre-dogs_vs_Healthy-dogs_UP NA Staphylococcus -bsdb:1049/54/1_Atopic-eczema:cADpre-dogs_vs_Healthy-dogs_UP NA Staphylococcus -bsdb:1049/55/1_Atopic-eczema:cADpost-dogs_vs_cADpre-dogs_DOWN NA Staphylococcus -bsdb:1049/56/1_Atopic-eczema:cADtreat-dogs_vs_cADpre-dogs_DOWN NA Staphylococcus -bsdb:1049/57/1_Atopic-eczema:cADpre-dogs_vs_Healthy-dogs_UP NA Staphylococcus -bsdb:1049/58/1_Atopic-eczema:cADpost-dogs_vs_cADpre-dogs_DOWN NA Staphylococcus -bsdb:1049/59/1_Atopic-eczema:Mitochondrial-haplogroups-C_vs_Mitochondrial-haplogroups-A_DOWN NA Anaerostipes Streptococcus Anaerotignum Blautia Amedibacterium -bsdb:1049/60/1_Atopic-eczema:Mitochondrial-haplogroups-C_vs_Mitochondrial-haplogroups-A_DOWN NA Arthrobacter Bacteroides -bsdb:1049/61/2_Atopic-eczema:Mitochondrial-haplogroups-C_vs_Mitochondrial-haplogroups-A_DOWN NA Rubellimicrobium Haemophilus -bsdb:1049/62/1_Atopic-eczema:Mitochondrial-haplogroups-C_vs_Mitochondrial-haplogroups-A_UP NA Rothia Tannerella Stenotrophomonas -bsdb:1049/62/2_Atopic-eczema:Mitochondrial-haplogroups-C_vs_Mitochondrial-haplogroups-A_DOWN NA Flavobacterium Pasteurella -bsdb:1049/63/1_Atopic-eczema:Mitochondrial-haplogroups-C_vs_Mitochondrial-haplogroups-A_DOWN NA Roseburia -bsdb:1049/64/1_Atopic-eczema:Mitochondrial-haplogroups-C_vs_Mitochondrial-haplogroups-A_UP NA Haemophilus -bsdb:1049/64/2_Atopic-eczema:Mitochondrial-haplogroups-C_vs_Mitochondrial-haplogroups-A_DOWN NA Bacteroides Capnocytophaga Neisseria bsdb:1050/1/1_Taxonomic-microbiome-measurement:Esophagus_vs_Oral-cavity_UP NA Acinetobacter Actinobacillus Allobaculum Blautia Bradyrhizobium Chryseobacterium Coprococcus Enhydrobacter Methylobacterium Novosphingobium Ochrobactrum Oscillospira Phenylobacterium Propionibacterium Pseudomonas Ralstonia Saprospira Sediminibacterium Sphingobium Sphingomonas Staphylococcus Stenotrophomonas Streptococcus bsdb:1050/1/2_Taxonomic-microbiome-measurement:Esophagus_vs_Oral-cavity_DOWN NA Actinomyces Cardiobacterium Neisseria Paludibacter Selenomonas bsdb:1051/1/1_Lung-cancer:Lung-cancer-(L-group)_vs_Benign-pulmonary-diseases-(N-group)_UP NA Bacteroides diff --git a/bugsigdb_signatures_genus_taxname_exact.gmt b/bugsigdb_signatures_genus_taxname_exact.gmt index 82a4f1548..aba0a57dd 100644 --- a/bugsigdb_signatures_genus_taxname_exact.gmt +++ b/bugsigdb_signatures_genus_taxname_exact.gmt @@ -1,4 +1,4 @@ -# BugSigDB 2025-01-25_15:58_UTC, License: Creative Commons Attribution 4.0 International, URL: https://bugsigdb.org +# BugSigDB 2025-01-26_10:58_UTC, License: Creative Commons Attribution 4.0 International, URL: https://bugsigdb.org bsdb:1/1/1_Colorectal-adenoma:conventional-adenoma-cases_vs_controls_UP NA Actinomyces Corynebacterium Streptococcus Peptoniphilus Dorea Phascolarctobacterium Sutterella Bacillus bsdb:1/1/2_Colorectal-adenoma:conventional-adenoma-cases_vs_controls_DOWN NA Coprobacillus bsdb:1/2/1_Hyperplastic-Polyp:hyperplastic-polyp-cases_vs_controls_UP NA Anaerostipes @@ -3419,162 +3419,6 @@ bsdb:1048/44/1_Microbiome:Unspiked-pig-feces(P1)-at-16-hours-(5°C)_vs_Unspiked- bsdb:1048/44/2_Microbiome:Unspiked-pig-feces(P1)-at-16-hours-(5°C)_vs_Unspiked-pig-feces(P1)-at-16-hours-(-80°C)_DOWN NA Prevotella Phascolarctobacterium bsdb:1048/45/1_Microbiome:Unspiked-pig-feces(P1)-at-64-hours-(5°C)_vs_Unspiked-pig-feces(P1)-at-16-hours-(-80°C)_UP NA Treponema Faecalibacterium Phascolarctobacterium Roseburia bsdb:1048/45/2_Microbiome:Unspiked-pig-feces(P1)-at-64-hours-(5°C)_vs_Unspiked-pig-feces(P1)-at-16-hours-(-80°C)_DOWN NA Prevotella -bsdb:1048/46/1_Microbiome:Unspiked-pig-feces(P1)-at-16-hours-(22°C)_vs_Unspiked-pig-feces(P1)-at-16-hours-(-80°C)_UP NA Treponema Faecalibacterium Roseburia -bsdb:1048/46/2_Microbiome:Unspiked-pig-feces(P1)-at-16-hours-(22°C)_vs_Unspiked-pig-feces(P1)-at-16-hours-(-80°C)_DOWN NA Prevotella Phascolarctobacterium -bsdb:1048/47/1_Microbiome:Unspiked-pig-feces(P1)-at-64-hours-(22°C)_vs_Unspiked-pig-feces(P1)-at-16-hours-(-80°C)_UP NA Treponema Faecalibacterium -bsdb:1048/47/2_Microbiome:Unspiked-pig-feces(P1)-at-64-hours-(22°C)_vs_Unspiked-pig-feces(P1)-at-16-hours-(-80°C)_DOWN NA Prevotella -bsdb:1048/48/1_Microbiome:Unspiked-pig-feces(P1)-at-16-hours-(-20°C)_vs_Unspiked-pig-feces(P1)-at-64-hours-(-80°C)_UP NA Faecalibacterium Roseburia -bsdb:1048/48/2_Microbiome:Unspiked-pig-feces(P1)-at-16-hours-(-20°C)_vs_Unspiked-pig-feces(P1)-at-64-hours-(-80°C)_DOWN NA Prevotella Treponema Phascolarctobacterium -bsdb:1048/49/1_Microbiome:Unspiked-pig-feces(P1)-at-64-hours-(-20°C)_vs_Unspiked-pig-feces(P1)-at-64-hours-(-80°C)_UP NA Treponema Faecalibacterium Roseburia -bsdb:1048/49/2_Microbiome:Unspiked-pig-feces(P1)-at-64-hours-(-20°C)_vs_Unspiked-pig-feces(P1)-at-64-hours-(-80°C)_DOWN NA Prevotella Phascolarctobacterium -bsdb:1048/50/1_Microbiome:Unspiked-pig-feces(P1)-at-16-hours-(5°C)_vs_Unspiked-pig-feces(P1)-at-64-hours-(-80°C)_UP NA Treponema Faecalibacterium Roseburia -bsdb:1048/50/2_Microbiome:Unspiked-pig-feces(P1)-at-16-hours-(5°C)_vs_Unspiked-pig-feces(P1)-at-64-hours-(-80°C)_DOWN NA Prevotella Phascolarctobacterium -bsdb:1048/51/1_Microbiome:Unspiked-pig-feces(P1)-at-64-hours-(5°C)_vs_Unspiked-pig-feces(P1)-at-64-hours-(-80°C)_UP NA Faecalibacterium Roseburia -bsdb:1048/51/2_Microbiome:Unspiked-pig-feces(P1)-at-64-hours-(5°C)_vs_Unspiked-pig-feces(P1)-at-64-hours-(-80°C)_DOWN NA Prevotella Treponema Phascolarctobacterium -bsdb:1048/52/1_Microbiome:Unspiked-pig-feces(P1)-at-16-hours-(22°C)_vs_Unspiked-pig-feces(P1)-at-64-hours-(-80°C)_UP NA Treponema Faecalibacterium Phascolarctobacterium Roseburia -bsdb:1048/52/2_Microbiome:Unspiked-pig-feces(P1)-at-16-hours-(22°C)_vs_Unspiked-pig-feces(P1)-at-64-hours-(-80°C)_DOWN NA Prevotella -bsdb:1048/53/1_Microbiome:Unspiked-pig-feces(P1)-at-64-hours-(22°C)_vs_Unspiked-pig-feces(P1)-at-64-hours-(-80°C)_UP NA Treponema Faecalibacterium Phascolarctobacterium Roseburia -bsdb:1048/53/2_Microbiome:Unspiked-pig-feces(P1)-at-64-hours-(22°C)_vs_Unspiked-pig-feces(P1)-at-64-hours-(-80°C)_DOWN NA Prevotella -bsdb:1048/54/1_Microbiome:Unspiked-pig-feces(P1)-at-64-hours-(-20°C)_vs_Unspiked-pig-feces(P1)-at-16-hours-(-20°C)_UP NA Treponema -bsdb:1048/54/2_Microbiome:Unspiked-pig-feces(P1)-at-64-hours-(-20°C)_vs_Unspiked-pig-feces(P1)-at-16-hours-(-20°C)_DOWN NA Prevotella Phascolarctobacterium Faecalibacterium Roseburia -bsdb:1048/55/1_Microbiome:Unspiked-pig-feces(P1)-at-16-hours-(5°C)_vs_Unspiked-pig-feces(P1)-at-16-hours-(-20°C)_UP NA Treponema Faecalibacterium Roseburia -bsdb:1048/55/2_Microbiome:Unspiked-pig-feces(P1)-at-16-hours-(5°C)_vs_Unspiked-pig-feces(P1)-at-16-hours-(-20°C)_DOWN NA Prevotella Phascolarctobacterium -bsdb:1048/56/1_Microbiome:Unspiked-pig-feces(P1)-at-64-hours-(5°C)_vs_Unspiked-pig-feces(P1)-at-16-hours-(-20°C)_UP NA Treponema Faecalibacterium Phascolarctobacterium Roseburia -bsdb:1048/56/2_Microbiome:Unspiked-pig-feces(P1)-at-64-hours-(5°C)_vs_Unspiked-pig-feces(P1)-at-16-hours-(-20°C)_DOWN NA Prevotella -bsdb:1048/57/1_Microbiome:Unspiked-pig-feces(P1)-at-16-hours-(22°C)_vs_Unspiked-pig-feces(P1)-at-16-hours-(-20°C)_UP NA Treponema Faecalibacterium Phascolarctobacterium Roseburia -bsdb:1048/57/2_Microbiome:Unspiked-pig-feces(P1)-at-16-hours-(22°C)_vs_Unspiked-pig-feces(P1)-at-16-hours-(-20°C)_DOWN NA Prevotella -bsdb:1048/58/1_Microbiome:Unspiked-pig-feces(P1)-at-64-hours-(22°C)_vs_Unspiked-pig-feces(P1)-at-16-hours-(-20°C)_UP NA Treponema Faecalibacterium Phascolarctobacterium Roseburia -bsdb:1048/58/2_Microbiome:Unspiked-pig-feces(P1)-at-64-hours-(22°C)_vs_Unspiked-pig-feces(P1)-at-16-hours-(-20°C)_DOWN NA Prevotella -bsdb:1048/62/1_Microbiome:Unspiked-pig-feces(P1)-at-16-hours-(5°C)_vs_Unspiked-pig-feces(P1)-at-64-hours-(-20°C)_UP NA Treponema Faecalibacterium -bsdb:1048/62/2_Microbiome:Unspiked-pig-feces(P1)-at-16-hours-(5°C)_vs_Unspiked-pig-feces(P1)-at-64-hours-(-20°C)_DOWN NA Prevotella Phascolarctobacterium Roseburia -bsdb:1048/64/1_Microbiome:Unspiked-pig-feces(P1)-at-64-hours-(5°C)_vs_Unspiked-pig-feces(P1)-at-64-hours-(-20°C)_UP NA Faecalibacterium Phascolarctobacterium Roseburia -bsdb:1048/64/2_Microbiome:Unspiked-pig-feces(P1)-at-64-hours-(5°C)_vs_Unspiked-pig-feces(P1)-at-64-hours-(-20°C)_DOWN NA Prevotella Treponema -bsdb:1048/65/1_Microbiome:Unspiked-pig-feces(P1)-at-16-hours-(22°C)_vs_Unspiked-pig-feces(P1)-at-64-hours-(-20°C)_UP NA Treponema Faecalibacterium Phascolarctobacterium Roseburia -bsdb:1048/65/2_Microbiome:Unspiked-pig-feces(P1)-at-16-hours-(22°C)_vs_Unspiked-pig-feces(P1)-at-64-hours-(-20°C)_DOWN NA Prevotella -bsdb:1048/66/1_Microbiome:Unspiked-pig-feces(P1)-at-64-hours-(22°C)_vs_Unspiked-pig-feces(P1)-at-64-hours-(-20°C)_UP NA Treponema Phascolarctobacterium Faecalibacterium Roseburia -bsdb:1048/66/2_Microbiome:Unspiked-pig-feces(P1)-at-64-hours-(22°C)_vs_Unspiked-pig-feces(P1)-at-64-hours-(-20°C)_DOWN NA Prevotella -bsdb:1048/67/1_Microbiome:Unspiked-pig-feces(P1)-at-64-hours-(5°C)_vs_Unspiked-pig-feces(P1)-at-16-hours-(5°C)_UP NA Treponema Faecalibacterium Roseburia -bsdb:1048/67/2_Microbiome:Unspiked-pig-feces(P1)-at-64-hours-(5°C)_vs_Unspiked-pig-feces(P1)-at-16-hours-(5°C)_DOWN NA Prevotella Phascolarctobacterium -bsdb:1048/68/1_Microbiome:Unspiked-pig-feces(P1)-at-16-hours-(22°C)_vs_Unspiked-pig-feces(P1)-at-16-hours-(5°C)_UP NA Treponema Faecalibacterium Phascolarctobacterium Roseburia -bsdb:1048/68/2_Microbiome:Unspiked-pig-feces(P1)-at-16-hours-(22°C)_vs_Unspiked-pig-feces(P1)-at-16-hours-(5°C)_DOWN NA Prevotella -bsdb:1048/69/1_Microbiome:Unspiked-pig-feces(P1)-at-64-hours-(22°C)_vs_Unspiked-pig-feces(P1)-at-16-hours-(5°C)_UP NA Faecalibacterium Phascolarctobacterium Roseburia -bsdb:1048/69/2_Microbiome:Unspiked-pig-feces(P1)-at-64-hours-(22°C)_vs_Unspiked-pig-feces(P1)-at-16-hours-(5°C)_DOWN NA Prevotella Treponema -bsdb:1048/70/1_Microbiome:Unspiked-pig-feces(P1)-at-16-hours-(22°C)_vs_Unspiked-pig-feces(P1)-at-64-hours-(5°C)_UP NA Treponema Faecalibacterium -bsdb:1048/70/2_Microbiome:Unspiked-pig-feces(P1)-at-16-hours-(22°C)_vs_Unspiked-pig-feces(P1)-at-64-hours-(5°C)_DOWN NA Prevotella Phascolarctobacterium Roseburia -bsdb:1048/71/1_Microbiome:Unspiked-pig-feces(P1)-at-64-hours-(22°C)_vs_Unspiked-pig-feces(P1)-at-64-hours-(5°C)_UP NA Treponema Faecalibacterium -bsdb:1048/71/2_Microbiome:Unspiked-pig-feces(P1)-at-64-hours-(22°C)_vs_Unspiked-pig-feces(P1)-at-64-hours-(5°C)_DOWN NA Prevotella Phascolarctobacterium Roseburia -bsdb:1048/72/1_Microbiome:Unspiked-pig-feces(P1)-at-64-hours-(22°C)_vs_Unspiked-pig-feces(P1)-at-16-hours-(22°C)_UP NA Treponema Faecalibacterium -bsdb:1048/72/2_Microbiome:Unspiked-pig-feces(P1)-at-64-hours-(22°C)_vs_Unspiked-pig-feces(P1)-at-16-hours-(22°C)_DOWN NA Prevotella Phascolarctobacterium Roseburia -bsdb:1048/109/1_Microbiome:Unspiked-pig-feces(P2)-at-16-hours-(-80°C)_vs_Unspiked-pig-feces(P2)-at-0-hour_UP NA Phascolarctobacterium Prevotella Roseburia -bsdb:1048/109/2_Microbiome:Unspiked-pig-feces(P2)-at-16-hours-(-80°C)_vs_Unspiked-pig-feces(P2)-at-0-hour_DOWN NA Faecalibacterium Treponema -bsdb:1048/110/1_Microbiome:Unspiked-pig-feces(P2)-at-64-hours-(-80°C)_vs_Unspiked-pig-feces(P2)-at-0-hour_UP NA Prevotella -bsdb:1048/110/2_Microbiome:Unspiked-pig-feces(P2)-at-64-hours-(-80°C)_vs_Unspiked-pig-feces(P2)-at-0-hour_DOWN NA Faecalibacterium Phascolarctobacterium Roseburia Treponema -bsdb:1048/111/1_Microbiome:Unspiked-pig-feces(P2)-at-16-hours-(-20°C)_vs_Unspiked-pig-feces(P2)-at-0-hour_UP NA Prevotella Phascolarctobacterium Roseburia -bsdb:1048/111/2_Microbiome:Unspiked-pig-feces(P2)-at-16-hours-(-20°C)_vs_Unspiked-pig-feces(P2)-at-0-hour_DOWN NA Treponema Faecalibacterium -bsdb:1048/112/1_Microbiome:Unspiked-pig-feces(P2)-at-64-hours-(-20°C)_vs_Unspiked-pig-feces(P2)-at-0-hour_UP NA Prevotella Phascolarctobacterium -bsdb:1048/112/2_Microbiome:Unspiked-pig-feces(P2)-at-64-hours-(-20°C)_vs_Unspiked-pig-feces(P2)-at-0-hour_DOWN NA Treponema Faecalibacterium Roseburia -bsdb:1048/113/1_Microbiome:Unspiked-pig-feces(P2)-at-16-hours-(5°C)_vs_Unspiked-pig-feces(P2)-at-0-hour_UP NA Faecalibacterium Phascolarctobacterium Roseburia -bsdb:1048/113/2_Microbiome:Unspiked-pig-feces(P2)-at-16-hours-(5°C)_vs_Unspiked-pig-feces(P2)-at-0-hour_DOWN NA Prevotella Treponema -bsdb:1048/114/1_Microbiome:Unspiked-pig-feces(P2)-at-64-hours-(5°C)_vs_Unspiked-pig-feces(P2)-at-0-hour_UP NA Faecalibacterium Phascolarctobacterium Roseburia -bsdb:1048/114/2_Microbiome:Unspiked-pig-feces(P2)-at-64-hours-(5°C)_vs_Unspiked-pig-feces(P2)-at-0-hour_DOWN NA Prevotella Treponema -bsdb:1048/115/1_Microbiome:Unspiked-pig-feces(P2)-at-16-hours-(22°C)_vs_Unspiked-pig-feces(P2)-at-0-hour_UP NA Faecalibacterium Phascolarctobacterium Roseburia -bsdb:1048/115/2_Microbiome:Unspiked-pig-feces(P2)-at-16-hours-(22°C)_vs_Unspiked-pig-feces(P2)-at-0-hour_DOWN NA Prevotella Treponema -bsdb:1048/116/1_Microbiome:Unspiked-pig-feces(P2)-at-64-hours-(22°C)_vs_Unspiked-pig-feces(P2)-at-0-hour_UP NA Faecalibacterium Phascolarctobacterium Roseburia -bsdb:1048/116/2_Microbiome:Unspiked-pig-feces(P2)-at-64-hours-(22°C)_vs_Unspiked-pig-feces(P2)-at-0-hour_DOWN NA Prevotella Treponema -bsdb:1048/117/1_Microbiome:Unspiked-pig-feces(P2)-at-64-hours-(80°C)_vs_Unspiked-pig-feces(P2)-at-16-hours-(-80°C)_UP NA Faecalibacterium -bsdb:1048/117/2_Microbiome:Unspiked-pig-feces(P2)-at-64-hours-(80°C)_vs_Unspiked-pig-feces(P2)-at-16-hours-(-80°C)_DOWN NA Prevotella Treponema Phascolarctobacterium Roseburia -bsdb:1048/118/1_Microbiome:Unspiked-pig-feces(P2)-at-16-hours-(-20°C)_vs_Unspiked-pig-feces(P2)-at-16-hours-(-80°C)_UP NA Prevotella Phascolarctobacterium -bsdb:1048/118/2_Microbiome:Unspiked-pig-feces(P2)-at-16-hours-(-20°C)_vs_Unspiked-pig-feces(P2)-at-16-hours-(-80°C)_DOWN NA Treponema Faecalibacterium Roseburia -bsdb:1048/119/1_Microbiome:Unspiked-pig-feces(P2)-at-64-hours-(-20°C)_vs_Unspiked-pig-feces(P2)-at-16-hours-(-80°C)_UP NA Prevotella Phascolarctobacterium -bsdb:1048/119/2_Microbiome:Unspiked-pig-feces(P2)-at-64-hours-(-20°C)_vs_Unspiked-pig-feces(P2)-at-16-hours-(-80°C)_DOWN NA Treponema Faecalibacterium Roseburia -bsdb:1048/120/1_Microbiome:Unspiked-pig-feces(P2)-at-16-hours-(5°C)_vs_Unspiked-pig-feces(P2)-at-16-hours-(-80°C)_UP NA Treponema Faecalibacterium Phascolarctobacterium Roseburia -bsdb:1048/120/2_Microbiome:Unspiked-pig-feces(P2)-at-16-hours-(5°C)_vs_Unspiked-pig-feces(P2)-at-16-hours-(-80°C)_DOWN NA Prevotella -bsdb:1048/121/1_Microbiome:Unspiked-pig-feces(P2)-at-64-hours-(5°C)_vs_Unspiked-pig-feces(P2)-at-16-hours-(-80°C)_UP NA Treponema Faecalibacterium Phascolarctobacterium Roseburia -bsdb:1048/121/2_Microbiome:Unspiked-pig-feces(P2)-at-64-hours-(5°C)_vs_Unspiked-pig-feces(P2)-at-16-hours-(-80°C)_DOWN NA Prevotella -bsdb:1048/122/1_Microbiome:Unspiked-pig-feces(P2)-at-16-hours-(22°C)_vs_Unspiked-pig-feces(P2)-at-16-hours-(-80°C)_UP NA Treponema Faecalibacterium Phascolarctobacterium Roseburia -bsdb:1048/122/2_Microbiome:Unspiked-pig-feces(P2)-at-16-hours-(22°C)_vs_Unspiked-pig-feces(P2)-at-16-hours-(-80°C)_DOWN NA Prevotella -bsdb:1048/123/1_Microbiome:Unspiked-pig-feces(P2)-at-64-hours-(22°C)_vs_Unspiked-pig-feces(P2)-at-16-hours-(-80°C)_UP NA Treponema Faecalibacterium Phascolarctobacterium Roseburia -bsdb:1048/123/2_Microbiome:Unspiked-pig-feces(P2)-at-64-hours-(22°C)_vs_Unspiked-pig-feces(P2)-at-16-hours-(-80°C)_DOWN NA Prevotella -bsdb:1048/124/1_Microbiome:Unspiked-pig-feces(P2)-at-16-hours-(-20°C)_vs_Unspiked-pig-feces(P2)-at-64-hours-(-80°C)_UP NA Prevotella Treponema Phascolarctobacterium Roseburia -bsdb:1048/124/2_Microbiome:Unspiked-pig-feces(P2)-at-16-hours-(-20°C)_vs_Unspiked-pig-feces(P2)-at-64-hours-(-80°C)_DOWN NA Faecalibacterium -bsdb:1048/125/1_Microbiome:Unspiked-pig-feces(P2)-at-64-hours-(-20°C)_vs_Unspiked-pig-feces(P2)-at-64-hours-(-80°C)_UP NA Prevotella Treponema Phascolarctobacterium -bsdb:1048/125/2_Microbiome:Unspiked-pig-feces(P2)-at-64-hours-(-20°C)_vs_Unspiked-pig-feces(P2)-at-64-hours-(-80°C)_DOWN NA Faecalibacterium Roseburia -bsdb:1048/126/1_Microbiome:Unspiked-pig-feces(P2)-at-16-hours-(5°C)_vs_Unspiked-pig-feces(P2)-at-64-hours-(-80°C)_UP NA Treponema Faecalibacterium Phascolarctobacterium Roseburia -bsdb:1048/126/2_Microbiome:Unspiked-pig-feces(P2)-at-16-hours-(5°C)_vs_Unspiked-pig-feces(P2)-at-64-hours-(-80°C)_DOWN NA Prevotella -bsdb:1048/127/1_Microbiome:Unspiked-pig-feces(P2)-at-64-hours-(5°C)_vs_Unspiked-pig-feces(P2)-at-64-hours-(-80°C)_UP NA Faecalibacterium Phascolarctobacterium Roseburia Treponema -bsdb:1048/127/2_Microbiome:Unspiked-pig-feces(P2)-at-64-hours-(5°C)_vs_Unspiked-pig-feces(P2)-at-64-hours-(-80°C)_DOWN NA Prevotella -bsdb:1048/128/1_Microbiome:Unspiked-pig-feces(P2)-at-16-hours-(22°C)_vs_Unspiked-pig-feces(P2)-at-64-hours-(-80°C)_UP NA Treponema Faecalibacterium Phascolarctobacterium Roseburia -bsdb:1048/128/2_Microbiome:Unspiked-pig-feces(P2)-at-16-hours-(22°C)_vs_Unspiked-pig-feces(P2)-at-64-hours-(-80°C)_DOWN NA Prevotella -bsdb:1048/129/1_Microbiome:Unspiked-pig-feces(P2)-at-64-hours-(22°C)_vs_Unspiked-pig-feces(P2)-at-64-hours-(-80°C)_UP NA Faecalibacterium Phascolarctobacterium Treponema Roseburia -bsdb:1048/129/2_Microbiome:Unspiked-pig-feces(P2)-at-64-hours-(22°C)_vs_Unspiked-pig-feces(P2)-at-64-hours-(-80°C)_DOWN NA Prevotella -bsdb:1048/130/1_Microbiome:Unspiked-pig-feces(P2)-at-64-hours-(-20°C)_vs_Unspiked-pig-feces(P2)-at-16-hours-(-20°C)_UP NA Phascolarctobacterium -bsdb:1048/130/2_Microbiome:Unspiked-pig-feces(P2)-at-64-hours-(-20°C)_vs_Unspiked-pig-feces(P2)-at-16-hours-(-20°C)_DOWN NA Prevotella Treponema Faecalibacterium Roseburia -bsdb:1048/131/1_Microbiome:Unspiked-pig-feces(P2)-at-16-hours-(5°C)_vs_Unspiked-pig-feces(P2)-at-16-hours-(-20°C)_UP NA Treponema Faecalibacterium Phascolarctobacterium Roseburia -bsdb:1048/131/2_Microbiome:Unspiked-pig-feces(P2)-at-16-hours-(5°C)_vs_Unspiked-pig-feces(P2)-at-16-hours-(-20°C)_DOWN NA Prevotella -bsdb:1048/132/1_Microbiome:Unspiked-pig-feces(P2)-at-64-hours-(5°C)_vs_Unspiked-pig-feces(P2)-at-16-hours-(-20°C)_UP NA Treponema Faecalibacterium Phascolarctobacterium Roseburia -bsdb:1048/132/2_Microbiome:Unspiked-pig-feces(P2)-at-64-hours-(5°C)_vs_Unspiked-pig-feces(P2)-at-16-hours-(-20°C)_DOWN NA Prevotella -bsdb:1048/133/1_Microbiome:Unspiked-pig-feces(P2)-at-16-hours-(22°C)_vs_Unspiked-pig-feces(P2)-at-16-hours-(-20°C)_UP NA Treponema Faecalibacterium Phascolarctobacterium Roseburia -bsdb:1048/133/2_Microbiome:Unspiked-pig-feces(P2)-at-16-hours-(22°C)_vs_Unspiked-pig-feces(P2)-at-16-hours-(-20°C)_DOWN NA Prevotella -bsdb:1048/134/1_Microbiome:Unspiked-pig-feces(P2)-at-64-hours-(22°C)_vs_Unspiked-pig-feces(P2)-at-16-hours-(-20°C)_UP NA Treponema Faecalibacterium Phascolarctobacterium Roseburia -bsdb:1048/134/2_Microbiome:Unspiked-pig-feces(P2)-at-64-hours-(22°C)_vs_Unspiked-pig-feces(P2)-at-16-hours-(-20°C)_DOWN NA Prevotella -bsdb:1048/135/1_Microbiome:Unspiked-pig-feces(P2)-at-16-hours-(5°C)_vs_Unspiked-pig-feces(P2)-at-64-hours-(-20°C)_UP NA Treponema Faecalibacterium Roseburia -bsdb:1048/135/2_Microbiome:Unspiked-pig-feces(P2)-at-16-hours-(5°C)_vs_Unspiked-pig-feces(P2)-at-64-hours-(-20°C)_DOWN NA Prevotella Phascolarctobacterium -bsdb:1048/136/1_Microbiome:Unspiked-pig-feces(P2)-at-64-hours-(5°C)_vs_Unspiked-pig-feces(P2)-at-64-hours-(-20°C)_UP NA Treponema Faecalibacterium Phascolarctobacterium Roseburia -bsdb:1048/136/2_Microbiome:Unspiked-pig-feces(P2)-at-64-hours-(5°C)_vs_Unspiked-pig-feces(P2)-at-64-hours-(-20°C)_DOWN NA Prevotella -bsdb:1048/137/1_Microbiome:Unspiked-pig-feces(P2)-at-16-hours-(22°C)_vs_Unspiked-pig-feces(P2)-at-64-hours-(-20°C)_UP NA Faecalibacterium Treponema Roseburia Phascolarctobacterium -bsdb:1048/137/2_Microbiome:Unspiked-pig-feces(P2)-at-16-hours-(22°C)_vs_Unspiked-pig-feces(P2)-at-64-hours-(-20°C)_DOWN NA Prevotella -bsdb:1048/138/1_Microbiome:Unspiked-pig-feces(P2)-at-64-hours-(22°C)_vs_Unspiked-pig-feces(P2)-at-64-hours-(-20°C)_UP NA Treponema Faecalibacterium Phascolarctobacterium Roseburia -bsdb:1048/138/2_Microbiome:Unspiked-pig-feces(P2)-at-64-hours-(22°C)_vs_Unspiked-pig-feces(P2)-at-64-hours-(-20°C)_DOWN NA Prevotella -bsdb:1048/139/1_Microbiome:Unspiked-pig-feces(P2)-at-64-hours-(5°C)_vs_Unspiked-pig-feces(P2)-at-16-hours-(5°C)_UP NA Faecalibacterium Phascolarctobacterium Roseburia -bsdb:1048/139/2_Microbiome:Unspiked-pig-feces(P2)-at-64-hours-(5°C)_vs_Unspiked-pig-feces(P2)-at-16-hours-(5°C)_DOWN NA Prevotella Treponema -bsdb:1048/140/1_Microbiome:Unspiked-pig-feces(P2)-at-16-hours-(22°C)_vs_Unspiked-pig-feces(P2)-at-16-hours-(5°C)_UP NA Faecalibacterium Phascolarctobacterium Roseburia -bsdb:1048/140/2_Microbiome:Unspiked-pig-feces(P2)-at-16-hours-(22°C)_vs_Unspiked-pig-feces(P2)-at-16-hours-(5°C)_DOWN NA Prevotella Treponema -bsdb:1048/141/1_Microbiome:Unspiked-pig-feces(P2)-at-64-hours-(22°C)_vs_Unspiked-pig-feces(P2)-at-16-hours-(5°C)_UP NA Faecalibacterium Phascolarctobacterium Roseburia -bsdb:1048/141/2_Microbiome:Unspiked-pig-feces(P2)-at-64-hours-(22°C)_vs_Unspiked-pig-feces(P2)-at-16-hours-(5°C)_DOWN NA Prevotella Treponema -bsdb:1048/142/1_Microbiome:Unspiked-pig-feces(P2)-at-16-hours-(22°C)_vs_Unspiked-pig-feces(P2)-at-64-hours-(5°C)_UP NA Prevotella Treponema -bsdb:1048/142/2_Microbiome:Unspiked-pig-feces(P2)-at-16-hours-(22°C)_vs_Unspiked-pig-feces(P2)-at-64-hours-(5°C)_DOWN NA Faecalibacterium Phascolarctobacterium Roseburia -bsdb:1048/143/1_Microbiome:Unspiked-pig-feces(P2)-at-64-hours-(22°C)_vs_Unspiked-pig-feces(P2)-at-64-hours-(5°C)_UP NA Treponema Phascolarctobacterium -bsdb:1048/143/2_Microbiome:Unspiked-pig-feces(P2)-at-64-hours-(22°C)_vs_Unspiked-pig-feces(P2)-at-64-hours-(5°C)_DOWN NA Prevotella Faecalibacterium Roseburia -bsdb:1048/144/1_Microbiome:Unspiked-pig-feces(P2)-at-64-hours-(22°C)_vs_Unspiked-pig-feces(P2)-at-16-hours-(22°C)_UP NA Treponema Phascolarctobacterium Roseburia -bsdb:1048/144/2_Microbiome:Unspiked-pig-feces(P2)-at-64-hours-(22°C)_vs_Unspiked-pig-feces(P2)-at-16-hours-(22°C)_DOWN NA Faecalibacterium Prevotella -bsdb:1048/145/1_Microbiome:Unspiked-sewage-samples-(S1)-at-16-hours-(-80°C)_vs_Unspiked-sewage-samples-(S1)-at-0-hours_UP NA Arcobacter Prevotella Aeromonas -bsdb:1048/145/2_Microbiome:Unspiked-sewage-samples-(S1)-at-16-hours-(-80°C)_vs_Unspiked-sewage-samples-(S1)-at-0-hours_DOWN NA Acinetobacter Parabacteroides -bsdb:1048/146/1_Microbiome:Unspiked-sewage-samples-(S1)-at-64-hours-(-80°C)_vs_Unspiked-sewage-samples-(S1)-at-0-hours_UP NA Arcobacter Aeromonas -bsdb:1048/146/2_Microbiome:Unspiked-sewage-samples-(S1)-at-64-hours-(-80°C)_vs_Unspiked-sewage-samples-(S1)-at-0-hours_DOWN NA Acinetobacter Parabacteroides Prevotella -bsdb:1048/147/1_Microbiome:Unspiked-sewage-samples-(S1)-at-16-hours-(-20°C)_vs_Unspiked-sewage-samples-(S1)-at-0-hours_UP NA Arcobacter Aeromonas -bsdb:1048/147/2_Microbiome:Unspiked-sewage-samples-(S1)-at-16-hours-(-20°C)_vs_Unspiked-sewage-samples-(S1)-at-0-hours_DOWN NA Acinetobacter Parabacteroides Prevotella -bsdb:1048/148/1_Microbiome:Unspiked-sewage-samples-(S1)-at-64-hours-(-20°C)_vs_Unspiked-sewage-samples-(S1)-at-0-hours_UP NA Arcobacter Aeromonas Prevotella -bsdb:1048/148/2_Microbiome:Unspiked-sewage-samples-(S1)-at-64-hours-(-20°C)_vs_Unspiked-sewage-samples-(S1)-at-0-hours_DOWN NA Parabacteroides Acinetobacter -bsdb:1048/149/1_Microbiome:Unspiked-sewage-samples-(S1)-at-16-hours-(5°C)_vs_Unspiked-sewage-samples-(S1)-at-0-hours_UP NA Arcobacter Prevotella Aeromonas -bsdb:1048/149/2_Microbiome:Unspiked-sewage-samples-(S1)-at-16-hours-(5°C)_vs_Unspiked-sewage-samples-(S1)-at-0-hours_DOWN NA Acinetobacter Parabacteroides -bsdb:1048/150/1_Microbiome:Unspiked-sewage-samples-(S1)-at-64-hours-(5°C)_vs_Unspiked-sewage-samples-(S1)-at-0-hours_UP NA Parabacteroides Prevotella Aeromonas -bsdb:1048/150/2_Microbiome:Unspiked-sewage-samples-(S1)-at-64-hours-(5°C)_vs_Unspiked-sewage-samples-(S1)-at-0-hours_DOWN NA Arcobacter Acinetobacter -bsdb:1048/151/1_Microbiome:Unspiked-sewage-samples-(S1)-at-16-hours-(22°C)_vs_Unspiked-sewage-samples-(S1)-at-0-hours_UP NA Parabacteroides Prevotella Aeromonas -bsdb:1048/151/2_Microbiome:Unspiked-sewage-samples-(S1)-at-16-hours-(22°C)_vs_Unspiked-sewage-samples-(S1)-at-0-hours_DOWN NA Arcobacter Acinetobacter -bsdb:1048/152/1_Microbiome:Unspiked-sewage-samples-(S1)-at-64-hours-(22°C)_vs_Unspiked-sewage-samples-(S1)-at-0-hours_UP NA Prevotella Aeromonas -bsdb:1048/152/2_Microbiome:Unspiked-sewage-samples-(S1)-at-64-hours-(22°C)_vs_Unspiked-sewage-samples-(S1)-at-0-hours_DOWN NA Arcobacter Acinetobacter Parabacteroides -bsdb:1048/153/1_Microbiome:Unspiked-sewage-samples-(S1)-at-64-hours-(-80°C)_vs_Unspiked-sewage-samples-(S1)-at-16-hours-(-80°C)_UP NA Aeromonas -bsdb:1048/153/2_Microbiome:Unspiked-sewage-samples-(S1)-at-64-hours-(-80°C)_vs_Unspiked-sewage-samples-(S1)-at-16-hours-(-80°C)_DOWN NA Arcobacter Acinetobacter Parabacteroides Prevotella -bsdb:1048/154/1_Microbiome:Unspiked-sewage-samples-(S1)-at-16-hours-(-20°C)_vs_Unspiked-sewage-samples-(S1)-at-16-hours-(-80°C)_UP NA Acinetobacter -bsdb:1048/154/2_Microbiome:Unspiked-sewage-samples-(S1)-at-16-hours-(-20°C)_vs_Unspiked-sewage-samples-(S1)-at-16-hours-(-80°C)_DOWN NA Arcobacter Parabacteroides Prevotella Aeromonas -bsdb:1048/155/1_Microbiome:Unspiked-sewage-samples-(S1)-at-64-hours-(-20°C)_vs_Unspiked-sewage-samples-(S1)-at-16-hours-(-80°C)_UP NA Prevotella -bsdb:1048/155/2_Microbiome:Unspiked-sewage-samples-(S1)-at-64-hours-(-20°C)_vs_Unspiked-sewage-samples-(S1)-at-16-hours-(-80°C)_DOWN NA Arcobacter Acinetobacter Parabacteroides Aeromonas -bsdb:1048/156/1_Microbiome:Unspiked-sewage-samples-(S1)-at-16-hours-(5°C)_vs_Unspiked-sewage-samples-(S1)-at-16-hours-(-80°C)_UP NA Parabacteroides Prevotella -bsdb:1048/156/2_Microbiome:Unspiked-sewage-samples-(S1)-at-16-hours-(5°C)_vs_Unspiked-sewage-samples-(S1)-at-16-hours-(-80°C)_DOWN NA Arcobacter Acinetobacter Aeromonas -bsdb:1048/157/1_Microbiome:Unspiked-sewage-samples-(S1)-at-64-hours-(5°C)_vs_Unspiked-sewage-samples-(S1)-at-16-hours-(-80°C)_UP NA Parabacteroides -bsdb:1048/157/2_Microbiome:Unspiked-sewage-samples-(S1)-at-64-hours-(5°C)_vs_Unspiked-sewage-samples-(S1)-at-16-hours-(-80°C)_DOWN NA Arcobacter Acinetobacter Prevotella Aeromonas -bsdb:1048/158/1_Microbiome:Unspiked-sewage-samples-(S1)-at-16-hours-(22°C)_vs_Unspiked-sewage-samples-(S1)-at-16-hours-(-80°C)_UP NA Acinetobacter Parabacteroides Prevotella -bsdb:1048/158/2_Microbiome:Unspiked-sewage-samples-(S1)-at-16-hours-(22°C)_vs_Unspiked-sewage-samples-(S1)-at-16-hours-(-80°C)_DOWN NA Arcobacter Aeromonas -bsdb:1048/159/1_Microbiome:Unspiked-sewage-samples-(S1)-at-64-hours-(22°C)_vs_Unspiked-sewage-samples-(S1)-at-16-hours-(-80°C)_UP NA Prevotella Aeromonas -bsdb:1048/159/2_Microbiome:Unspiked-sewage-samples-(S1)-at-64-hours-(22°C)_vs_Unspiked-sewage-samples-(S1)-at-16-hours-(-80°C)_DOWN NA Arcobacter Acinetobacter Parabacteroides -bsdb:1048/160/1_Microbiome:Unspiked-sewage-samples-(S1)-at-16-hours-(-20°C)_vs_Unspiked-sewage-samples-(S1)-at-64-hours-(-80°C)_UP NA Arcobacter Acinetobacter Parabacteroides Aeromonas -bsdb:1048/160/2_Microbiome:Unspiked-sewage-samples-(S1)-at-16-hours-(-20°C)_vs_Unspiked-sewage-samples-(S1)-at-64-hours-(-80°C)_DOWN NA Prevotella -bsdb:1048/161/1_Microbiome:Unspiked-sewage-samples-(S1)-at-64-hours-(-20°C)_vs_Unspiked-sewage-samples-(S1)-at-64-hours-(-80°C)_UP NA Arcobacter Acinetobacter Parabacteroides Prevotella -bsdb:1048/161/2_Microbiome:Unspiked-sewage-samples-(S1)-at-64-hours-(-20°C)_vs_Unspiked-sewage-samples-(S1)-at-64-hours-(-80°C)_DOWN NA Aeromonas -bsdb:1048/162/1_Microbiome:Unspiked-sewage-samples-(S1)-at-16-hours-(5°C)_vs_Unspiked-sewage-samples-(S1)-at-64-hours-(-80°C)_UP NA Arcobacter Acinetobacter Parabacteroides Prevotella -bsdb:1048/162/2_Microbiome:Unspiked-sewage-samples-(S1)-at-16-hours-(5°C)_vs_Unspiked-sewage-samples-(S1)-at-64-hours-(-80°C)_DOWN NA Aeromonas -bsdb:1048/207/1_Microbiome:Unspiked-sewage-samples-(S2)-at-16-hours-(5°C)_vs_Unspiked-sewage-samples-(S2)-at-64-hours-(-20°C)_UP NA Parabacteroides -bsdb:1048/207/2_Microbiome:Unspiked-sewage-samples-(S2)-at-16-hours-(5°C)_vs_Unspiked-sewage-samples-(S2)-at-64-hours-(-20°C)_DOWN NA Arcobacter Acinetobacter Prevotella Aeromonas bsdb:1049/1/2_Atopic-eczema:cADtreat-dogs_vs_Healthy-dogs_DOWN NA Arthrobacter Corynebacterium bsdb:1049/2/1_Atopic-eczema:cADpost-dogs_vs_cADpre-dogs_DOWN NA Arthrobacter Bacillus Deinococcus Pseudomonas Skermanella bsdb:1049/2/2_Atopic-eczema:cADpost-dogs_vs_cADpre-dogs_UP NA Corynebacterium Cutibacterium Methylobacterium Nocardioides Paracoccus Roseomonas Rubellimicrobium Sphingomonas Staphylococcus Streptococcus @@ -3610,26 +3454,6 @@ bsdb:1049/41/2_Atopic-eczema:cADpost-dogs_vs_cADpre-dogs_UP NA Acetobacter Cutib bsdb:1049/43/1_Atopic-eczema:cADpre-dogs_vs_Healthy-dogs_UP NA Staphylococcus bsdb:1049/44/1_Atopic-eczema:cADtreat-dogs_vs_Healthy-dogs_DOWN NA Moraxella bsdb:1049/44/2_Atopic-eczema:cADtreat-dogs_vs_Healthy-dogs_UP NA Lautropia -bsdb:1049/47/1_Atopic-eczema:cADpre-dogs_vs_Healthy-dogs_UP NA Staphylococcus -bsdb:1049/48/1_Atopic-eczema:cADpost-dogs_vs_cADpre-dogs_DOWN NA Staphylococcus -bsdb:1049/49/1_Atopic-eczema:cADpre-dogs_vs_Healthy-dogs_UP NA Staphylococcus -bsdb:1049/50/1_Atopic-eczema:cADpre-dogs_vs_Healthy-dogs_UP NA Staphylococcus -bsdb:1049/51/1_Atopic-eczema:cADpost-dogs_vs_cADpre-dogs_DOWN NA Staphylococcus -bsdb:1049/52/1_Atopic-eczema:cADtreat-dogs_vs_cADpre-dogs_DOWN NA Staphylococcus -bsdb:1049/53/1_Atopic-eczema:cADpre-dogs_vs_Healthy-dogs_UP NA Staphylococcus -bsdb:1049/54/1_Atopic-eczema:cADpre-dogs_vs_Healthy-dogs_UP NA Staphylococcus -bsdb:1049/55/1_Atopic-eczema:cADpost-dogs_vs_cADpre-dogs_DOWN NA Staphylococcus -bsdb:1049/56/1_Atopic-eczema:cADtreat-dogs_vs_cADpre-dogs_DOWN NA Staphylococcus -bsdb:1049/57/1_Atopic-eczema:cADpre-dogs_vs_Healthy-dogs_UP NA Staphylococcus -bsdb:1049/58/1_Atopic-eczema:cADpost-dogs_vs_cADpre-dogs_DOWN NA Staphylococcus -bsdb:1049/59/1_Atopic-eczema:Mitochondrial-haplogroups-C_vs_Mitochondrial-haplogroups-A_DOWN NA Anaerostipes Streptococcus Anaerotignum Blautia Amedibacterium -bsdb:1049/60/1_Atopic-eczema:Mitochondrial-haplogroups-C_vs_Mitochondrial-haplogroups-A_DOWN NA Arthrobacter Bacteroides -bsdb:1049/61/2_Atopic-eczema:Mitochondrial-haplogroups-C_vs_Mitochondrial-haplogroups-A_DOWN NA Rubellimicrobium Haemophilus -bsdb:1049/62/1_Atopic-eczema:Mitochondrial-haplogroups-C_vs_Mitochondrial-haplogroups-A_UP NA Rothia Tannerella Stenotrophomonas -bsdb:1049/62/2_Atopic-eczema:Mitochondrial-haplogroups-C_vs_Mitochondrial-haplogroups-A_DOWN NA Flavobacterium Pasteurella -bsdb:1049/63/1_Atopic-eczema:Mitochondrial-haplogroups-C_vs_Mitochondrial-haplogroups-A_DOWN NA Roseburia -bsdb:1049/64/1_Atopic-eczema:Mitochondrial-haplogroups-C_vs_Mitochondrial-haplogroups-A_UP NA Haemophilus -bsdb:1049/64/2_Atopic-eczema:Mitochondrial-haplogroups-C_vs_Mitochondrial-haplogroups-A_DOWN NA Bacteroides Capnocytophaga Neisseria bsdb:1050/1/1_Taxonomic-microbiome-measurement:Esophagus_vs_Oral-cavity_UP NA Acinetobacter Actinobacillus Allobaculum Blautia Bradyrhizobium Chryseobacterium Coprococcus Enhydrobacter Methylobacterium Novosphingobium Ochrobactrum Oscillospira Phenylobacterium Propionibacterium Pseudomonas Ralstonia Saprospira Sediminibacterium Sphingobium Sphingomonas Staphylococcus Stenotrophomonas Streptococcus bsdb:1050/1/2_Taxonomic-microbiome-measurement:Esophagus_vs_Oral-cavity_DOWN NA Actinomyces Cardiobacterium Neisseria Paludibacter Selenomonas bsdb:1051/1/1_Lung-cancer:Lung-cancer-(L-group)_vs_Benign-pulmonary-diseases-(N-group)_UP NA Bacteroides diff --git a/bugsigdb_signatures_mixed_metaphlan.gmt b/bugsigdb_signatures_mixed_metaphlan.gmt index 9750f1620..62a8e0f29 100644 --- a/bugsigdb_signatures_mixed_metaphlan.gmt +++ b/bugsigdb_signatures_mixed_metaphlan.gmt @@ -1,4 +1,4 @@ -# BugSigDB 2025-01-25_15:58_UTC, License: Creative Commons Attribution 4.0 International, URL: https://bugsigdb.org +# BugSigDB 2025-01-26_10:58_UTC, License: Creative Commons Attribution 4.0 International, URL: https://bugsigdb.org bsdb:1/1/1_Colorectal-adenoma:conventional-adenoma-cases_vs_controls_UP NA k__Bacteria|p__Bacillota|c__Bacilli k__Bacteria|p__Pseudomonadota|c__Gammaproteobacteria k__Bacteria|p__Actinomycetota|c__Actinomycetes|o__Actinomycetales|f__Actinomycetaceae|g__Actinomyces k__Bacteria|p__Actinomycetota|c__Actinomycetes|o__Mycobacteriales|f__Corynebacteriaceae|g__Corynebacterium k__Bacteria|p__Bacillota|c__Bacilli|o__Lactobacillales|f__Streptococcaceae|g__Streptococcus k__Bacteria|p__Bacillota|c__Tissierellia|o__Tissierellales|f__Peptoniphilaceae|g__Peptoniphilus k__Bacteria|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Dorea k__Bacteria|p__Bacillota|c__Negativicutes|o__Acidaminococcales|f__Acidaminococcaceae|g__Phascolarctobacterium k__Bacteria|p__Pseudomonadota|c__Betaproteobacteria|o__Burkholderiales|f__Sutterellaceae|g__Sutterella k__Bacteria|p__Actinomycetota|c__Actinomycetes|o__Actinomycetales k__Bacteria|p__Actinomycetota|c__Actinomycetes|o__Actinomycetales|f__Actinomycetaceae k__Bacteria|p__Pseudomonadota|c__Betaproteobacteria|o__Burkholderiales|f__Alcaligenaceae k__Bacteria|p__Bacillota|c__Bacilli|o__Lactobacillales k__Bacteria|p__Bacillota|c__Bacilli|o__Lactobacillales|f__Streptococcaceae k__Bacteria|p__Bacillota|c__Negativicutes|o__Veillonellales|f__Veillonellaceae k__Bacteria|p__Pseudomonadota|c__Gammaproteobacteria|o__Enterobacterales k__Bacteria|p__Actinomycetota|c__Actinomycetes|o__Mycobacteriales|f__Corynebacteriaceae k__Bacteria|p__Bacillota|c__Bacilli|o__Lactobacillales|f__Lactobacillaceae|g__Lacticaseibacillus|s__Lacticaseibacillus zeae k__Bacteria|p__Bacillota|c__Bacilli|o__Bacillales|f__Bacillaceae|g__Bacillus k__Bacteria|p__Bacillota|c__Bacilli|o__Bacillales|f__Bacillaceae bsdb:1/1/2_Colorectal-adenoma:conventional-adenoma-cases_vs_controls_DOWN NA k__Bacteria|p__Bacillota|c__Erysipelotrichia|o__Erysipelotrichales|f__Coprobacillaceae|g__Coprobacillus k__Bacteria|p__Cyanobacteriota bsdb:1/2/1_Hyperplastic-Polyp:hyperplastic-polyp-cases_vs_controls_UP NA k__Bacteria|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Anaerostipes k__Bacteria|p__Bacillota|c__Bacilli|o__Lactobacillales|f__Lactobacillaceae|g__Lacticaseibacillus|s__Lacticaseibacillus zeae @@ -4592,162 +4592,6 @@ bsdb:1048/44/1_Microbiome:Unspiked-pig-feces(P1)-at-16-hours-(5°C)_vs_Unspiked- bsdb:1048/44/2_Microbiome:Unspiked-pig-feces(P1)-at-16-hours-(5°C)_vs_Unspiked-pig-feces(P1)-at-16-hours-(-80°C)_DOWN NA k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella k__Bacteria|p__Bacillota|c__Negativicutes|o__Acidaminococcales|f__Acidaminococcaceae|g__Phascolarctobacterium bsdb:1048/45/1_Microbiome:Unspiked-pig-feces(P1)-at-64-hours-(5°C)_vs_Unspiked-pig-feces(P1)-at-16-hours-(-80°C)_UP NA k__Bacteria|p__Spirochaetota|c__Spirochaetia|o__Spirochaetales|f__Treponemataceae|g__Treponema k__Bacteria|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Faecalibacterium k__Bacteria|p__Bacillota|c__Negativicutes|o__Acidaminococcales|f__Acidaminococcaceae|g__Phascolarctobacterium k__Bacteria|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Roseburia bsdb:1048/45/2_Microbiome:Unspiked-pig-feces(P1)-at-64-hours-(5°C)_vs_Unspiked-pig-feces(P1)-at-16-hours-(-80°C)_DOWN NA k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella -bsdb:1048/46/1_Microbiome:Unspiked-pig-feces(P1)-at-16-hours-(22°C)_vs_Unspiked-pig-feces(P1)-at-16-hours-(-80°C)_UP NA k__Bacteria|p__Spirochaetota|c__Spirochaetia|o__Spirochaetales|f__Treponemataceae|g__Treponema k__Bacteria|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Faecalibacterium k__Bacteria|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Roseburia -bsdb:1048/46/2_Microbiome:Unspiked-pig-feces(P1)-at-16-hours-(22°C)_vs_Unspiked-pig-feces(P1)-at-16-hours-(-80°C)_DOWN NA k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella k__Bacteria|p__Bacillota|c__Negativicutes|o__Acidaminococcales|f__Acidaminococcaceae|g__Phascolarctobacterium -bsdb:1048/47/1_Microbiome:Unspiked-pig-feces(P1)-at-64-hours-(22°C)_vs_Unspiked-pig-feces(P1)-at-16-hours-(-80°C)_UP NA k__Bacteria|p__Spirochaetota|c__Spirochaetia|o__Spirochaetales|f__Treponemataceae|g__Treponema k__Bacteria|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Faecalibacterium -bsdb:1048/47/2_Microbiome:Unspiked-pig-feces(P1)-at-64-hours-(22°C)_vs_Unspiked-pig-feces(P1)-at-16-hours-(-80°C)_DOWN NA k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella -bsdb:1048/48/1_Microbiome:Unspiked-pig-feces(P1)-at-16-hours-(-20°C)_vs_Unspiked-pig-feces(P1)-at-64-hours-(-80°C)_UP NA k__Bacteria|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Faecalibacterium k__Bacteria|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Roseburia -bsdb:1048/48/2_Microbiome:Unspiked-pig-feces(P1)-at-16-hours-(-20°C)_vs_Unspiked-pig-feces(P1)-at-64-hours-(-80°C)_DOWN NA k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella k__Bacteria|p__Spirochaetota|c__Spirochaetia|o__Spirochaetales|f__Treponemataceae|g__Treponema k__Bacteria|p__Bacillota|c__Negativicutes|o__Acidaminococcales|f__Acidaminococcaceae|g__Phascolarctobacterium -bsdb:1048/49/1_Microbiome:Unspiked-pig-feces(P1)-at-64-hours-(-20°C)_vs_Unspiked-pig-feces(P1)-at-64-hours-(-80°C)_UP NA k__Bacteria|p__Spirochaetota|c__Spirochaetia|o__Spirochaetales|f__Treponemataceae|g__Treponema k__Bacteria|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Faecalibacterium k__Bacteria|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Roseburia -bsdb:1048/49/2_Microbiome:Unspiked-pig-feces(P1)-at-64-hours-(-20°C)_vs_Unspiked-pig-feces(P1)-at-64-hours-(-80°C)_DOWN NA k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella k__Bacteria|p__Bacillota|c__Negativicutes|o__Acidaminococcales|f__Acidaminococcaceae|g__Phascolarctobacterium -bsdb:1048/50/1_Microbiome:Unspiked-pig-feces(P1)-at-16-hours-(5°C)_vs_Unspiked-pig-feces(P1)-at-64-hours-(-80°C)_UP NA k__Bacteria|p__Spirochaetota|c__Spirochaetia|o__Spirochaetales|f__Treponemataceae|g__Treponema k__Bacteria|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Faecalibacterium k__Bacteria|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Roseburia -bsdb:1048/50/2_Microbiome:Unspiked-pig-feces(P1)-at-16-hours-(5°C)_vs_Unspiked-pig-feces(P1)-at-64-hours-(-80°C)_DOWN NA k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella k__Bacteria|p__Bacillota|c__Negativicutes|o__Acidaminococcales|f__Acidaminococcaceae|g__Phascolarctobacterium -bsdb:1048/51/1_Microbiome:Unspiked-pig-feces(P1)-at-64-hours-(5°C)_vs_Unspiked-pig-feces(P1)-at-64-hours-(-80°C)_UP NA k__Bacteria|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Faecalibacterium k__Bacteria|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Roseburia -bsdb:1048/51/2_Microbiome:Unspiked-pig-feces(P1)-at-64-hours-(5°C)_vs_Unspiked-pig-feces(P1)-at-64-hours-(-80°C)_DOWN NA k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella k__Bacteria|p__Spirochaetota|c__Spirochaetia|o__Spirochaetales|f__Treponemataceae|g__Treponema k__Bacteria|p__Bacillota|c__Negativicutes|o__Acidaminococcales|f__Acidaminococcaceae|g__Phascolarctobacterium -bsdb:1048/52/1_Microbiome:Unspiked-pig-feces(P1)-at-16-hours-(22°C)_vs_Unspiked-pig-feces(P1)-at-64-hours-(-80°C)_UP NA k__Bacteria|p__Spirochaetota|c__Spirochaetia|o__Spirochaetales|f__Treponemataceae|g__Treponema k__Bacteria|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Faecalibacterium k__Bacteria|p__Bacillota|c__Negativicutes|o__Acidaminococcales|f__Acidaminococcaceae|g__Phascolarctobacterium k__Bacteria|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Roseburia -bsdb:1048/52/2_Microbiome:Unspiked-pig-feces(P1)-at-16-hours-(22°C)_vs_Unspiked-pig-feces(P1)-at-64-hours-(-80°C)_DOWN NA k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella -bsdb:1048/53/1_Microbiome:Unspiked-pig-feces(P1)-at-64-hours-(22°C)_vs_Unspiked-pig-feces(P1)-at-64-hours-(-80°C)_UP NA k__Bacteria|p__Spirochaetota|c__Spirochaetia|o__Spirochaetales|f__Treponemataceae|g__Treponema k__Bacteria|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Faecalibacterium k__Bacteria|p__Bacillota|c__Negativicutes|o__Acidaminococcales|f__Acidaminococcaceae|g__Phascolarctobacterium k__Bacteria|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Roseburia -bsdb:1048/53/2_Microbiome:Unspiked-pig-feces(P1)-at-64-hours-(22°C)_vs_Unspiked-pig-feces(P1)-at-64-hours-(-80°C)_DOWN NA k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella -bsdb:1048/54/1_Microbiome:Unspiked-pig-feces(P1)-at-64-hours-(-20°C)_vs_Unspiked-pig-feces(P1)-at-16-hours-(-20°C)_UP NA k__Bacteria|p__Spirochaetota|c__Spirochaetia|o__Spirochaetales|f__Treponemataceae|g__Treponema -bsdb:1048/54/2_Microbiome:Unspiked-pig-feces(P1)-at-64-hours-(-20°C)_vs_Unspiked-pig-feces(P1)-at-16-hours-(-20°C)_DOWN NA k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella k__Bacteria|p__Bacillota|c__Negativicutes|o__Acidaminococcales|f__Acidaminococcaceae|g__Phascolarctobacterium k__Bacteria|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Faecalibacterium k__Bacteria|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Roseburia -bsdb:1048/55/1_Microbiome:Unspiked-pig-feces(P1)-at-16-hours-(5°C)_vs_Unspiked-pig-feces(P1)-at-16-hours-(-20°C)_UP NA k__Bacteria|p__Spirochaetota|c__Spirochaetia|o__Spirochaetales|f__Treponemataceae|g__Treponema k__Bacteria|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Faecalibacterium k__Bacteria|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Roseburia -bsdb:1048/55/2_Microbiome:Unspiked-pig-feces(P1)-at-16-hours-(5°C)_vs_Unspiked-pig-feces(P1)-at-16-hours-(-20°C)_DOWN NA k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella k__Bacteria|p__Bacillota|c__Negativicutes|o__Acidaminococcales|f__Acidaminococcaceae|g__Phascolarctobacterium -bsdb:1048/56/1_Microbiome:Unspiked-pig-feces(P1)-at-64-hours-(5°C)_vs_Unspiked-pig-feces(P1)-at-16-hours-(-20°C)_UP NA k__Bacteria|p__Spirochaetota|c__Spirochaetia|o__Spirochaetales|f__Treponemataceae|g__Treponema k__Bacteria|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Faecalibacterium k__Bacteria|p__Bacillota|c__Negativicutes|o__Acidaminococcales|f__Acidaminococcaceae|g__Phascolarctobacterium k__Bacteria|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Roseburia -bsdb:1048/56/2_Microbiome:Unspiked-pig-feces(P1)-at-64-hours-(5°C)_vs_Unspiked-pig-feces(P1)-at-16-hours-(-20°C)_DOWN NA k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella -bsdb:1048/57/1_Microbiome:Unspiked-pig-feces(P1)-at-16-hours-(22°C)_vs_Unspiked-pig-feces(P1)-at-16-hours-(-20°C)_UP NA k__Bacteria|p__Spirochaetota|c__Spirochaetia|o__Spirochaetales|f__Treponemataceae|g__Treponema k__Bacteria|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Faecalibacterium k__Bacteria|p__Bacillota|c__Negativicutes|o__Acidaminococcales|f__Acidaminococcaceae|g__Phascolarctobacterium k__Bacteria|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Roseburia -bsdb:1048/57/2_Microbiome:Unspiked-pig-feces(P1)-at-16-hours-(22°C)_vs_Unspiked-pig-feces(P1)-at-16-hours-(-20°C)_DOWN NA k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella -bsdb:1048/58/1_Microbiome:Unspiked-pig-feces(P1)-at-64-hours-(22°C)_vs_Unspiked-pig-feces(P1)-at-16-hours-(-20°C)_UP NA k__Bacteria|p__Spirochaetota|c__Spirochaetia|o__Spirochaetales|f__Treponemataceae|g__Treponema k__Bacteria|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Faecalibacterium k__Bacteria|p__Bacillota|c__Negativicutes|o__Acidaminococcales|f__Acidaminococcaceae|g__Phascolarctobacterium k__Bacteria|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Roseburia -bsdb:1048/58/2_Microbiome:Unspiked-pig-feces(P1)-at-64-hours-(22°C)_vs_Unspiked-pig-feces(P1)-at-16-hours-(-20°C)_DOWN NA k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella -bsdb:1048/62/1_Microbiome:Unspiked-pig-feces(P1)-at-16-hours-(5°C)_vs_Unspiked-pig-feces(P1)-at-64-hours-(-20°C)_UP NA k__Bacteria|p__Spirochaetota|c__Spirochaetia|o__Spirochaetales|f__Treponemataceae|g__Treponema k__Bacteria|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Faecalibacterium -bsdb:1048/62/2_Microbiome:Unspiked-pig-feces(P1)-at-16-hours-(5°C)_vs_Unspiked-pig-feces(P1)-at-64-hours-(-20°C)_DOWN NA k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella k__Bacteria|p__Bacillota|c__Negativicutes|o__Acidaminococcales|f__Acidaminococcaceae|g__Phascolarctobacterium k__Bacteria|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Roseburia -bsdb:1048/64/1_Microbiome:Unspiked-pig-feces(P1)-at-64-hours-(5°C)_vs_Unspiked-pig-feces(P1)-at-64-hours-(-20°C)_UP NA k__Bacteria|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Faecalibacterium k__Bacteria|p__Bacillota|c__Negativicutes|o__Acidaminococcales|f__Acidaminococcaceae|g__Phascolarctobacterium k__Bacteria|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Roseburia -bsdb:1048/64/2_Microbiome:Unspiked-pig-feces(P1)-at-64-hours-(5°C)_vs_Unspiked-pig-feces(P1)-at-64-hours-(-20°C)_DOWN NA k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella k__Bacteria|p__Spirochaetota|c__Spirochaetia|o__Spirochaetales|f__Treponemataceae|g__Treponema -bsdb:1048/65/1_Microbiome:Unspiked-pig-feces(P1)-at-16-hours-(22°C)_vs_Unspiked-pig-feces(P1)-at-64-hours-(-20°C)_UP NA k__Bacteria|p__Spirochaetota|c__Spirochaetia|o__Spirochaetales|f__Treponemataceae|g__Treponema k__Bacteria|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Faecalibacterium k__Bacteria|p__Bacillota|c__Negativicutes|o__Acidaminococcales|f__Acidaminococcaceae|g__Phascolarctobacterium k__Bacteria|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Roseburia -bsdb:1048/65/2_Microbiome:Unspiked-pig-feces(P1)-at-16-hours-(22°C)_vs_Unspiked-pig-feces(P1)-at-64-hours-(-20°C)_DOWN NA k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella -bsdb:1048/66/1_Microbiome:Unspiked-pig-feces(P1)-at-64-hours-(22°C)_vs_Unspiked-pig-feces(P1)-at-64-hours-(-20°C)_UP NA k__Bacteria|p__Spirochaetota|c__Spirochaetia|o__Spirochaetales|f__Treponemataceae|g__Treponema k__Bacteria|p__Bacillota|c__Negativicutes|o__Acidaminococcales|f__Acidaminococcaceae|g__Phascolarctobacterium k__Bacteria|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Faecalibacterium k__Bacteria|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Roseburia -bsdb:1048/66/2_Microbiome:Unspiked-pig-feces(P1)-at-64-hours-(22°C)_vs_Unspiked-pig-feces(P1)-at-64-hours-(-20°C)_DOWN NA k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella -bsdb:1048/67/1_Microbiome:Unspiked-pig-feces(P1)-at-64-hours-(5°C)_vs_Unspiked-pig-feces(P1)-at-16-hours-(5°C)_UP NA k__Bacteria|p__Spirochaetota|c__Spirochaetia|o__Spirochaetales|f__Treponemataceae|g__Treponema k__Bacteria|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Faecalibacterium k__Bacteria|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Roseburia -bsdb:1048/67/2_Microbiome:Unspiked-pig-feces(P1)-at-64-hours-(5°C)_vs_Unspiked-pig-feces(P1)-at-16-hours-(5°C)_DOWN NA k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella k__Bacteria|p__Bacillota|c__Negativicutes|o__Acidaminococcales|f__Acidaminococcaceae|g__Phascolarctobacterium -bsdb:1048/68/1_Microbiome:Unspiked-pig-feces(P1)-at-16-hours-(22°C)_vs_Unspiked-pig-feces(P1)-at-16-hours-(5°C)_UP NA k__Bacteria|p__Spirochaetota|c__Spirochaetia|o__Spirochaetales|f__Treponemataceae|g__Treponema k__Bacteria|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Faecalibacterium k__Bacteria|p__Bacillota|c__Negativicutes|o__Acidaminococcales|f__Acidaminococcaceae|g__Phascolarctobacterium k__Bacteria|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Roseburia -bsdb:1048/68/2_Microbiome:Unspiked-pig-feces(P1)-at-16-hours-(22°C)_vs_Unspiked-pig-feces(P1)-at-16-hours-(5°C)_DOWN NA k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella -bsdb:1048/69/1_Microbiome:Unspiked-pig-feces(P1)-at-64-hours-(22°C)_vs_Unspiked-pig-feces(P1)-at-16-hours-(5°C)_UP NA k__Bacteria|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Faecalibacterium k__Bacteria|p__Bacillota|c__Negativicutes|o__Acidaminococcales|f__Acidaminococcaceae|g__Phascolarctobacterium k__Bacteria|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Roseburia -bsdb:1048/69/2_Microbiome:Unspiked-pig-feces(P1)-at-64-hours-(22°C)_vs_Unspiked-pig-feces(P1)-at-16-hours-(5°C)_DOWN NA k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella k__Bacteria|p__Spirochaetota|c__Spirochaetia|o__Spirochaetales|f__Treponemataceae|g__Treponema -bsdb:1048/70/1_Microbiome:Unspiked-pig-feces(P1)-at-16-hours-(22°C)_vs_Unspiked-pig-feces(P1)-at-64-hours-(5°C)_UP NA k__Bacteria|p__Spirochaetota|c__Spirochaetia|o__Spirochaetales|f__Treponemataceae|g__Treponema k__Bacteria|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Faecalibacterium -bsdb:1048/70/2_Microbiome:Unspiked-pig-feces(P1)-at-16-hours-(22°C)_vs_Unspiked-pig-feces(P1)-at-64-hours-(5°C)_DOWN NA k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella k__Bacteria|p__Bacillota|c__Negativicutes|o__Acidaminococcales|f__Acidaminococcaceae|g__Phascolarctobacterium k__Bacteria|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Roseburia -bsdb:1048/71/1_Microbiome:Unspiked-pig-feces(P1)-at-64-hours-(22°C)_vs_Unspiked-pig-feces(P1)-at-64-hours-(5°C)_UP NA k__Bacteria|p__Spirochaetota|c__Spirochaetia|o__Spirochaetales|f__Treponemataceae|g__Treponema k__Bacteria|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Faecalibacterium -bsdb:1048/71/2_Microbiome:Unspiked-pig-feces(P1)-at-64-hours-(22°C)_vs_Unspiked-pig-feces(P1)-at-64-hours-(5°C)_DOWN NA k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella k__Bacteria|p__Bacillota|c__Negativicutes|o__Acidaminococcales|f__Acidaminococcaceae|g__Phascolarctobacterium k__Bacteria|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Roseburia -bsdb:1048/72/1_Microbiome:Unspiked-pig-feces(P1)-at-64-hours-(22°C)_vs_Unspiked-pig-feces(P1)-at-16-hours-(22°C)_UP NA k__Bacteria|p__Spirochaetota|c__Spirochaetia|o__Spirochaetales|f__Treponemataceae|g__Treponema k__Bacteria|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Faecalibacterium -bsdb:1048/72/2_Microbiome:Unspiked-pig-feces(P1)-at-64-hours-(22°C)_vs_Unspiked-pig-feces(P1)-at-16-hours-(22°C)_DOWN NA k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella k__Bacteria|p__Bacillota|c__Negativicutes|o__Acidaminococcales|f__Acidaminococcaceae|g__Phascolarctobacterium k__Bacteria|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Roseburia -bsdb:1048/109/1_Microbiome:Unspiked-pig-feces(P2)-at-16-hours-(-80°C)_vs_Unspiked-pig-feces(P2)-at-0-hour_UP NA k__Bacteria|p__Bacillota|c__Negativicutes|o__Acidaminococcales|f__Acidaminococcaceae|g__Phascolarctobacterium k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella k__Bacteria|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Roseburia -bsdb:1048/109/2_Microbiome:Unspiked-pig-feces(P2)-at-16-hours-(-80°C)_vs_Unspiked-pig-feces(P2)-at-0-hour_DOWN NA k__Bacteria|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Faecalibacterium k__Bacteria|p__Spirochaetota|c__Spirochaetia|o__Spirochaetales|f__Treponemataceae|g__Treponema -bsdb:1048/110/1_Microbiome:Unspiked-pig-feces(P2)-at-64-hours-(-80°C)_vs_Unspiked-pig-feces(P2)-at-0-hour_UP NA k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella -bsdb:1048/110/2_Microbiome:Unspiked-pig-feces(P2)-at-64-hours-(-80°C)_vs_Unspiked-pig-feces(P2)-at-0-hour_DOWN NA k__Bacteria|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Faecalibacterium k__Bacteria|p__Bacillota|c__Negativicutes|o__Acidaminococcales|f__Acidaminococcaceae|g__Phascolarctobacterium k__Bacteria|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Roseburia k__Bacteria|p__Spirochaetota|c__Spirochaetia|o__Spirochaetales|f__Treponemataceae|g__Treponema -bsdb:1048/111/1_Microbiome:Unspiked-pig-feces(P2)-at-16-hours-(-20°C)_vs_Unspiked-pig-feces(P2)-at-0-hour_UP NA k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella k__Bacteria|p__Bacillota|c__Negativicutes|o__Acidaminococcales|f__Acidaminococcaceae|g__Phascolarctobacterium k__Bacteria|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Roseburia -bsdb:1048/111/2_Microbiome:Unspiked-pig-feces(P2)-at-16-hours-(-20°C)_vs_Unspiked-pig-feces(P2)-at-0-hour_DOWN NA k__Bacteria|p__Spirochaetota|c__Spirochaetia|o__Spirochaetales|f__Treponemataceae|g__Treponema k__Bacteria|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Faecalibacterium -bsdb:1048/112/1_Microbiome:Unspiked-pig-feces(P2)-at-64-hours-(-20°C)_vs_Unspiked-pig-feces(P2)-at-0-hour_UP NA k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella k__Bacteria|p__Bacillota|c__Negativicutes|o__Acidaminococcales|f__Acidaminococcaceae|g__Phascolarctobacterium -bsdb:1048/112/2_Microbiome:Unspiked-pig-feces(P2)-at-64-hours-(-20°C)_vs_Unspiked-pig-feces(P2)-at-0-hour_DOWN NA k__Bacteria|p__Spirochaetota|c__Spirochaetia|o__Spirochaetales|f__Treponemataceae|g__Treponema k__Bacteria|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Faecalibacterium k__Bacteria|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Roseburia -bsdb:1048/113/1_Microbiome:Unspiked-pig-feces(P2)-at-16-hours-(5°C)_vs_Unspiked-pig-feces(P2)-at-0-hour_UP NA k__Bacteria|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Faecalibacterium k__Bacteria|p__Bacillota|c__Negativicutes|o__Acidaminococcales|f__Acidaminococcaceae|g__Phascolarctobacterium k__Bacteria|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Roseburia -bsdb:1048/113/2_Microbiome:Unspiked-pig-feces(P2)-at-16-hours-(5°C)_vs_Unspiked-pig-feces(P2)-at-0-hour_DOWN NA k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella k__Bacteria|p__Spirochaetota|c__Spirochaetia|o__Spirochaetales|f__Treponemataceae|g__Treponema -bsdb:1048/114/1_Microbiome:Unspiked-pig-feces(P2)-at-64-hours-(5°C)_vs_Unspiked-pig-feces(P2)-at-0-hour_UP NA k__Bacteria|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Faecalibacterium k__Bacteria|p__Bacillota|c__Negativicutes|o__Acidaminococcales|f__Acidaminococcaceae|g__Phascolarctobacterium k__Bacteria|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Roseburia -bsdb:1048/114/2_Microbiome:Unspiked-pig-feces(P2)-at-64-hours-(5°C)_vs_Unspiked-pig-feces(P2)-at-0-hour_DOWN NA k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella k__Bacteria|p__Spirochaetota|c__Spirochaetia|o__Spirochaetales|f__Treponemataceae|g__Treponema -bsdb:1048/115/1_Microbiome:Unspiked-pig-feces(P2)-at-16-hours-(22°C)_vs_Unspiked-pig-feces(P2)-at-0-hour_UP NA k__Bacteria|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Faecalibacterium k__Bacteria|p__Bacillota|c__Negativicutes|o__Acidaminococcales|f__Acidaminococcaceae|g__Phascolarctobacterium k__Bacteria|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Roseburia -bsdb:1048/115/2_Microbiome:Unspiked-pig-feces(P2)-at-16-hours-(22°C)_vs_Unspiked-pig-feces(P2)-at-0-hour_DOWN NA k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella k__Bacteria|p__Spirochaetota|c__Spirochaetia|o__Spirochaetales|f__Treponemataceae|g__Treponema -bsdb:1048/116/1_Microbiome:Unspiked-pig-feces(P2)-at-64-hours-(22°C)_vs_Unspiked-pig-feces(P2)-at-0-hour_UP NA k__Bacteria|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Faecalibacterium k__Bacteria|p__Bacillota|c__Negativicutes|o__Acidaminococcales|f__Acidaminococcaceae|g__Phascolarctobacterium k__Bacteria|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Roseburia -bsdb:1048/116/2_Microbiome:Unspiked-pig-feces(P2)-at-64-hours-(22°C)_vs_Unspiked-pig-feces(P2)-at-0-hour_DOWN NA k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella k__Bacteria|p__Spirochaetota|c__Spirochaetia|o__Spirochaetales|f__Treponemataceae|g__Treponema -bsdb:1048/117/1_Microbiome:Unspiked-pig-feces(P2)-at-64-hours-(80°C)_vs_Unspiked-pig-feces(P2)-at-16-hours-(-80°C)_UP NA k__Bacteria|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Faecalibacterium -bsdb:1048/117/2_Microbiome:Unspiked-pig-feces(P2)-at-64-hours-(80°C)_vs_Unspiked-pig-feces(P2)-at-16-hours-(-80°C)_DOWN NA k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella k__Bacteria|p__Spirochaetota|c__Spirochaetia|o__Spirochaetales|f__Treponemataceae|g__Treponema k__Bacteria|p__Bacillota|c__Negativicutes|o__Acidaminococcales|f__Acidaminococcaceae|g__Phascolarctobacterium k__Bacteria|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Roseburia -bsdb:1048/118/1_Microbiome:Unspiked-pig-feces(P2)-at-16-hours-(-20°C)_vs_Unspiked-pig-feces(P2)-at-16-hours-(-80°C)_UP NA k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella k__Bacteria|p__Bacillota|c__Negativicutes|o__Acidaminococcales|f__Acidaminococcaceae|g__Phascolarctobacterium -bsdb:1048/118/2_Microbiome:Unspiked-pig-feces(P2)-at-16-hours-(-20°C)_vs_Unspiked-pig-feces(P2)-at-16-hours-(-80°C)_DOWN NA k__Bacteria|p__Spirochaetota|c__Spirochaetia|o__Spirochaetales|f__Treponemataceae|g__Treponema k__Bacteria|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Faecalibacterium k__Bacteria|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Roseburia -bsdb:1048/119/1_Microbiome:Unspiked-pig-feces(P2)-at-64-hours-(-20°C)_vs_Unspiked-pig-feces(P2)-at-16-hours-(-80°C)_UP NA k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella k__Bacteria|p__Bacillota|c__Negativicutes|o__Acidaminococcales|f__Acidaminococcaceae|g__Phascolarctobacterium -bsdb:1048/119/2_Microbiome:Unspiked-pig-feces(P2)-at-64-hours-(-20°C)_vs_Unspiked-pig-feces(P2)-at-16-hours-(-80°C)_DOWN NA k__Bacteria|p__Spirochaetota|c__Spirochaetia|o__Spirochaetales|f__Treponemataceae|g__Treponema k__Bacteria|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Faecalibacterium k__Bacteria|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Roseburia -bsdb:1048/120/1_Microbiome:Unspiked-pig-feces(P2)-at-16-hours-(5°C)_vs_Unspiked-pig-feces(P2)-at-16-hours-(-80°C)_UP NA k__Bacteria|p__Spirochaetota|c__Spirochaetia|o__Spirochaetales|f__Treponemataceae|g__Treponema k__Bacteria|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Faecalibacterium k__Bacteria|p__Bacillota|c__Negativicutes|o__Acidaminococcales|f__Acidaminococcaceae|g__Phascolarctobacterium k__Bacteria|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Roseburia -bsdb:1048/120/2_Microbiome:Unspiked-pig-feces(P2)-at-16-hours-(5°C)_vs_Unspiked-pig-feces(P2)-at-16-hours-(-80°C)_DOWN NA k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella -bsdb:1048/121/1_Microbiome:Unspiked-pig-feces(P2)-at-64-hours-(5°C)_vs_Unspiked-pig-feces(P2)-at-16-hours-(-80°C)_UP NA k__Bacteria|p__Spirochaetota|c__Spirochaetia|o__Spirochaetales|f__Treponemataceae|g__Treponema k__Bacteria|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Faecalibacterium k__Bacteria|p__Bacillota|c__Negativicutes|o__Acidaminococcales|f__Acidaminococcaceae|g__Phascolarctobacterium k__Bacteria|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Roseburia -bsdb:1048/121/2_Microbiome:Unspiked-pig-feces(P2)-at-64-hours-(5°C)_vs_Unspiked-pig-feces(P2)-at-16-hours-(-80°C)_DOWN NA k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella -bsdb:1048/122/1_Microbiome:Unspiked-pig-feces(P2)-at-16-hours-(22°C)_vs_Unspiked-pig-feces(P2)-at-16-hours-(-80°C)_UP NA k__Bacteria|p__Spirochaetota|c__Spirochaetia|o__Spirochaetales|f__Treponemataceae|g__Treponema k__Bacteria|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Faecalibacterium k__Bacteria|p__Bacillota|c__Negativicutes|o__Acidaminococcales|f__Acidaminococcaceae|g__Phascolarctobacterium k__Bacteria|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Roseburia -bsdb:1048/122/2_Microbiome:Unspiked-pig-feces(P2)-at-16-hours-(22°C)_vs_Unspiked-pig-feces(P2)-at-16-hours-(-80°C)_DOWN NA k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella -bsdb:1048/123/1_Microbiome:Unspiked-pig-feces(P2)-at-64-hours-(22°C)_vs_Unspiked-pig-feces(P2)-at-16-hours-(-80°C)_UP NA k__Bacteria|p__Spirochaetota|c__Spirochaetia|o__Spirochaetales|f__Treponemataceae|g__Treponema k__Bacteria|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Faecalibacterium k__Bacteria|p__Bacillota|c__Negativicutes|o__Acidaminococcales|f__Acidaminococcaceae|g__Phascolarctobacterium k__Bacteria|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Roseburia -bsdb:1048/123/2_Microbiome:Unspiked-pig-feces(P2)-at-64-hours-(22°C)_vs_Unspiked-pig-feces(P2)-at-16-hours-(-80°C)_DOWN NA k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella -bsdb:1048/124/1_Microbiome:Unspiked-pig-feces(P2)-at-16-hours-(-20°C)_vs_Unspiked-pig-feces(P2)-at-64-hours-(-80°C)_UP NA k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella k__Bacteria|p__Spirochaetota|c__Spirochaetia|o__Spirochaetales|f__Treponemataceae|g__Treponema k__Bacteria|p__Bacillota|c__Negativicutes|o__Acidaminococcales|f__Acidaminococcaceae|g__Phascolarctobacterium k__Bacteria|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Roseburia -bsdb:1048/124/2_Microbiome:Unspiked-pig-feces(P2)-at-16-hours-(-20°C)_vs_Unspiked-pig-feces(P2)-at-64-hours-(-80°C)_DOWN NA k__Bacteria|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Faecalibacterium -bsdb:1048/125/1_Microbiome:Unspiked-pig-feces(P2)-at-64-hours-(-20°C)_vs_Unspiked-pig-feces(P2)-at-64-hours-(-80°C)_UP NA k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella k__Bacteria|p__Spirochaetota|c__Spirochaetia|o__Spirochaetales|f__Treponemataceae|g__Treponema k__Bacteria|p__Bacillota|c__Negativicutes|o__Acidaminococcales|f__Acidaminococcaceae|g__Phascolarctobacterium -bsdb:1048/125/2_Microbiome:Unspiked-pig-feces(P2)-at-64-hours-(-20°C)_vs_Unspiked-pig-feces(P2)-at-64-hours-(-80°C)_DOWN NA k__Bacteria|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Faecalibacterium k__Bacteria|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Roseburia -bsdb:1048/126/1_Microbiome:Unspiked-pig-feces(P2)-at-16-hours-(5°C)_vs_Unspiked-pig-feces(P2)-at-64-hours-(-80°C)_UP NA k__Bacteria|p__Spirochaetota|c__Spirochaetia|o__Spirochaetales|f__Treponemataceae|g__Treponema k__Bacteria|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Faecalibacterium k__Bacteria|p__Bacillota|c__Negativicutes|o__Acidaminococcales|f__Acidaminococcaceae|g__Phascolarctobacterium k__Bacteria|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Roseburia -bsdb:1048/126/2_Microbiome:Unspiked-pig-feces(P2)-at-16-hours-(5°C)_vs_Unspiked-pig-feces(P2)-at-64-hours-(-80°C)_DOWN NA k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella -bsdb:1048/127/1_Microbiome:Unspiked-pig-feces(P2)-at-64-hours-(5°C)_vs_Unspiked-pig-feces(P2)-at-64-hours-(-80°C)_UP NA k__Bacteria|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Faecalibacterium k__Bacteria|p__Bacillota|c__Negativicutes|o__Acidaminococcales|f__Acidaminococcaceae|g__Phascolarctobacterium k__Bacteria|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Roseburia k__Bacteria|p__Spirochaetota|c__Spirochaetia|o__Spirochaetales|f__Treponemataceae|g__Treponema -bsdb:1048/127/2_Microbiome:Unspiked-pig-feces(P2)-at-64-hours-(5°C)_vs_Unspiked-pig-feces(P2)-at-64-hours-(-80°C)_DOWN NA k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella -bsdb:1048/128/1_Microbiome:Unspiked-pig-feces(P2)-at-16-hours-(22°C)_vs_Unspiked-pig-feces(P2)-at-64-hours-(-80°C)_UP NA k__Bacteria|p__Spirochaetota|c__Spirochaetia|o__Spirochaetales|f__Treponemataceae|g__Treponema k__Bacteria|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Faecalibacterium k__Bacteria|p__Bacillota|c__Negativicutes|o__Acidaminococcales|f__Acidaminococcaceae|g__Phascolarctobacterium k__Bacteria|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Roseburia -bsdb:1048/128/2_Microbiome:Unspiked-pig-feces(P2)-at-16-hours-(22°C)_vs_Unspiked-pig-feces(P2)-at-64-hours-(-80°C)_DOWN NA k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella -bsdb:1048/129/1_Microbiome:Unspiked-pig-feces(P2)-at-64-hours-(22°C)_vs_Unspiked-pig-feces(P2)-at-64-hours-(-80°C)_UP NA k__Bacteria|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Faecalibacterium k__Bacteria|p__Bacillota|c__Negativicutes|o__Acidaminococcales|f__Acidaminococcaceae|g__Phascolarctobacterium k__Bacteria|p__Spirochaetota|c__Spirochaetia|o__Spirochaetales|f__Treponemataceae|g__Treponema k__Bacteria|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Roseburia -bsdb:1048/129/2_Microbiome:Unspiked-pig-feces(P2)-at-64-hours-(22°C)_vs_Unspiked-pig-feces(P2)-at-64-hours-(-80°C)_DOWN NA k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella -bsdb:1048/130/1_Microbiome:Unspiked-pig-feces(P2)-at-64-hours-(-20°C)_vs_Unspiked-pig-feces(P2)-at-16-hours-(-20°C)_UP NA k__Bacteria|p__Bacillota|c__Negativicutes|o__Acidaminococcales|f__Acidaminococcaceae|g__Phascolarctobacterium -bsdb:1048/130/2_Microbiome:Unspiked-pig-feces(P2)-at-64-hours-(-20°C)_vs_Unspiked-pig-feces(P2)-at-16-hours-(-20°C)_DOWN NA k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella k__Bacteria|p__Spirochaetota|c__Spirochaetia|o__Spirochaetales|f__Treponemataceae|g__Treponema k__Bacteria|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Faecalibacterium k__Bacteria|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Roseburia -bsdb:1048/131/1_Microbiome:Unspiked-pig-feces(P2)-at-16-hours-(5°C)_vs_Unspiked-pig-feces(P2)-at-16-hours-(-20°C)_UP NA k__Bacteria|p__Spirochaetota|c__Spirochaetia|o__Spirochaetales|f__Treponemataceae|g__Treponema k__Bacteria|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Faecalibacterium k__Bacteria|p__Bacillota|c__Negativicutes|o__Acidaminococcales|f__Acidaminococcaceae|g__Phascolarctobacterium k__Bacteria|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Roseburia -bsdb:1048/131/2_Microbiome:Unspiked-pig-feces(P2)-at-16-hours-(5°C)_vs_Unspiked-pig-feces(P2)-at-16-hours-(-20°C)_DOWN NA k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella -bsdb:1048/132/1_Microbiome:Unspiked-pig-feces(P2)-at-64-hours-(5°C)_vs_Unspiked-pig-feces(P2)-at-16-hours-(-20°C)_UP NA k__Bacteria|p__Spirochaetota|c__Spirochaetia|o__Spirochaetales|f__Treponemataceae|g__Treponema k__Bacteria|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Faecalibacterium k__Bacteria|p__Bacillota|c__Negativicutes|o__Acidaminococcales|f__Acidaminococcaceae|g__Phascolarctobacterium k__Bacteria|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Roseburia -bsdb:1048/132/2_Microbiome:Unspiked-pig-feces(P2)-at-64-hours-(5°C)_vs_Unspiked-pig-feces(P2)-at-16-hours-(-20°C)_DOWN NA k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella -bsdb:1048/133/1_Microbiome:Unspiked-pig-feces(P2)-at-16-hours-(22°C)_vs_Unspiked-pig-feces(P2)-at-16-hours-(-20°C)_UP NA k__Bacteria|p__Spirochaetota|c__Spirochaetia|o__Spirochaetales|f__Treponemataceae|g__Treponema k__Bacteria|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Faecalibacterium k__Bacteria|p__Bacillota|c__Negativicutes|o__Acidaminococcales|f__Acidaminococcaceae|g__Phascolarctobacterium k__Bacteria|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Roseburia -bsdb:1048/133/2_Microbiome:Unspiked-pig-feces(P2)-at-16-hours-(22°C)_vs_Unspiked-pig-feces(P2)-at-16-hours-(-20°C)_DOWN NA k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella -bsdb:1048/134/1_Microbiome:Unspiked-pig-feces(P2)-at-64-hours-(22°C)_vs_Unspiked-pig-feces(P2)-at-16-hours-(-20°C)_UP NA k__Bacteria|p__Spirochaetota|c__Spirochaetia|o__Spirochaetales|f__Treponemataceae|g__Treponema k__Bacteria|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Faecalibacterium k__Bacteria|p__Bacillota|c__Negativicutes|o__Acidaminococcales|f__Acidaminococcaceae|g__Phascolarctobacterium k__Bacteria|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Roseburia -bsdb:1048/134/2_Microbiome:Unspiked-pig-feces(P2)-at-64-hours-(22°C)_vs_Unspiked-pig-feces(P2)-at-16-hours-(-20°C)_DOWN NA k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella -bsdb:1048/135/1_Microbiome:Unspiked-pig-feces(P2)-at-16-hours-(5°C)_vs_Unspiked-pig-feces(P2)-at-64-hours-(-20°C)_UP NA k__Bacteria|p__Spirochaetota|c__Spirochaetia|o__Spirochaetales|f__Treponemataceae|g__Treponema k__Bacteria|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Faecalibacterium k__Bacteria|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Roseburia -bsdb:1048/135/2_Microbiome:Unspiked-pig-feces(P2)-at-16-hours-(5°C)_vs_Unspiked-pig-feces(P2)-at-64-hours-(-20°C)_DOWN NA k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella k__Bacteria|p__Bacillota|c__Negativicutes|o__Acidaminococcales|f__Acidaminococcaceae|g__Phascolarctobacterium -bsdb:1048/136/1_Microbiome:Unspiked-pig-feces(P2)-at-64-hours-(5°C)_vs_Unspiked-pig-feces(P2)-at-64-hours-(-20°C)_UP NA k__Bacteria|p__Spirochaetota|c__Spirochaetia|o__Spirochaetales|f__Treponemataceae|g__Treponema k__Bacteria|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Faecalibacterium k__Bacteria|p__Bacillota|c__Negativicutes|o__Acidaminococcales|f__Acidaminococcaceae|g__Phascolarctobacterium k__Bacteria|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Roseburia -bsdb:1048/136/2_Microbiome:Unspiked-pig-feces(P2)-at-64-hours-(5°C)_vs_Unspiked-pig-feces(P2)-at-64-hours-(-20°C)_DOWN NA k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella -bsdb:1048/137/1_Microbiome:Unspiked-pig-feces(P2)-at-16-hours-(22°C)_vs_Unspiked-pig-feces(P2)-at-64-hours-(-20°C)_UP NA k__Bacteria|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Faecalibacterium k__Bacteria|p__Spirochaetota|c__Spirochaetia|o__Spirochaetales|f__Treponemataceae|g__Treponema k__Bacteria|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Roseburia k__Bacteria|p__Bacillota|c__Negativicutes|o__Acidaminococcales|f__Acidaminococcaceae|g__Phascolarctobacterium -bsdb:1048/137/2_Microbiome:Unspiked-pig-feces(P2)-at-16-hours-(22°C)_vs_Unspiked-pig-feces(P2)-at-64-hours-(-20°C)_DOWN NA k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella -bsdb:1048/138/1_Microbiome:Unspiked-pig-feces(P2)-at-64-hours-(22°C)_vs_Unspiked-pig-feces(P2)-at-64-hours-(-20°C)_UP NA k__Bacteria|p__Spirochaetota|c__Spirochaetia|o__Spirochaetales|f__Treponemataceae|g__Treponema k__Bacteria|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Faecalibacterium k__Bacteria|p__Bacillota|c__Negativicutes|o__Acidaminococcales|f__Acidaminococcaceae|g__Phascolarctobacterium k__Bacteria|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Roseburia -bsdb:1048/138/2_Microbiome:Unspiked-pig-feces(P2)-at-64-hours-(22°C)_vs_Unspiked-pig-feces(P2)-at-64-hours-(-20°C)_DOWN NA k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella -bsdb:1048/139/1_Microbiome:Unspiked-pig-feces(P2)-at-64-hours-(5°C)_vs_Unspiked-pig-feces(P2)-at-16-hours-(5°C)_UP NA k__Bacteria|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Faecalibacterium k__Bacteria|p__Bacillota|c__Negativicutes|o__Acidaminococcales|f__Acidaminococcaceae|g__Phascolarctobacterium k__Bacteria|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Roseburia -bsdb:1048/139/2_Microbiome:Unspiked-pig-feces(P2)-at-64-hours-(5°C)_vs_Unspiked-pig-feces(P2)-at-16-hours-(5°C)_DOWN NA k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella k__Bacteria|p__Spirochaetota|c__Spirochaetia|o__Spirochaetales|f__Treponemataceae|g__Treponema -bsdb:1048/140/1_Microbiome:Unspiked-pig-feces(P2)-at-16-hours-(22°C)_vs_Unspiked-pig-feces(P2)-at-16-hours-(5°C)_UP NA k__Bacteria|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Faecalibacterium k__Bacteria|p__Bacillota|c__Negativicutes|o__Acidaminococcales|f__Acidaminococcaceae|g__Phascolarctobacterium k__Bacteria|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Roseburia -bsdb:1048/140/2_Microbiome:Unspiked-pig-feces(P2)-at-16-hours-(22°C)_vs_Unspiked-pig-feces(P2)-at-16-hours-(5°C)_DOWN NA k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella k__Bacteria|p__Spirochaetota|c__Spirochaetia|o__Spirochaetales|f__Treponemataceae|g__Treponema -bsdb:1048/141/1_Microbiome:Unspiked-pig-feces(P2)-at-64-hours-(22°C)_vs_Unspiked-pig-feces(P2)-at-16-hours-(5°C)_UP NA k__Bacteria|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Faecalibacterium k__Bacteria|p__Bacillota|c__Negativicutes|o__Acidaminococcales|f__Acidaminococcaceae|g__Phascolarctobacterium k__Bacteria|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Roseburia -bsdb:1048/141/2_Microbiome:Unspiked-pig-feces(P2)-at-64-hours-(22°C)_vs_Unspiked-pig-feces(P2)-at-16-hours-(5°C)_DOWN NA k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella k__Bacteria|p__Spirochaetota|c__Spirochaetia|o__Spirochaetales|f__Treponemataceae|g__Treponema -bsdb:1048/142/1_Microbiome:Unspiked-pig-feces(P2)-at-16-hours-(22°C)_vs_Unspiked-pig-feces(P2)-at-64-hours-(5°C)_UP NA k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella k__Bacteria|p__Spirochaetota|c__Spirochaetia|o__Spirochaetales|f__Treponemataceae|g__Treponema -bsdb:1048/142/2_Microbiome:Unspiked-pig-feces(P2)-at-16-hours-(22°C)_vs_Unspiked-pig-feces(P2)-at-64-hours-(5°C)_DOWN NA k__Bacteria|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Faecalibacterium k__Bacteria|p__Bacillota|c__Negativicutes|o__Acidaminococcales|f__Acidaminococcaceae|g__Phascolarctobacterium k__Bacteria|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Roseburia -bsdb:1048/143/1_Microbiome:Unspiked-pig-feces(P2)-at-64-hours-(22°C)_vs_Unspiked-pig-feces(P2)-at-64-hours-(5°C)_UP NA k__Bacteria|p__Spirochaetota|c__Spirochaetia|o__Spirochaetales|f__Treponemataceae|g__Treponema k__Bacteria|p__Bacillota|c__Negativicutes|o__Acidaminococcales|f__Acidaminococcaceae|g__Phascolarctobacterium -bsdb:1048/143/2_Microbiome:Unspiked-pig-feces(P2)-at-64-hours-(22°C)_vs_Unspiked-pig-feces(P2)-at-64-hours-(5°C)_DOWN NA k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella k__Bacteria|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Faecalibacterium k__Bacteria|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Roseburia -bsdb:1048/144/1_Microbiome:Unspiked-pig-feces(P2)-at-64-hours-(22°C)_vs_Unspiked-pig-feces(P2)-at-16-hours-(22°C)_UP NA k__Bacteria|p__Spirochaetota|c__Spirochaetia|o__Spirochaetales|f__Treponemataceae|g__Treponema k__Bacteria|p__Bacillota|c__Negativicutes|o__Acidaminococcales|f__Acidaminococcaceae|g__Phascolarctobacterium k__Bacteria|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Roseburia -bsdb:1048/144/2_Microbiome:Unspiked-pig-feces(P2)-at-64-hours-(22°C)_vs_Unspiked-pig-feces(P2)-at-16-hours-(22°C)_DOWN NA k__Bacteria|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Faecalibacterium k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella -bsdb:1048/145/1_Microbiome:Unspiked-sewage-samples-(S1)-at-16-hours-(-80°C)_vs_Unspiked-sewage-samples-(S1)-at-0-hours_UP NA k__Bacteria|p__Campylobacterota|c__Epsilonproteobacteria|o__Campylobacterales|f__Arcobacteraceae|g__Arcobacter k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella k__Bacteria|p__Pseudomonadota|c__Gammaproteobacteria|o__Aeromonadales|f__Aeromonadaceae|g__Aeromonas -bsdb:1048/145/2_Microbiome:Unspiked-sewage-samples-(S1)-at-16-hours-(-80°C)_vs_Unspiked-sewage-samples-(S1)-at-0-hours_DOWN NA k__Bacteria|p__Pseudomonadota|c__Gammaproteobacteria|o__Moraxellales|f__Moraxellaceae|g__Acinetobacter k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Tannerellaceae|g__Parabacteroides -bsdb:1048/146/1_Microbiome:Unspiked-sewage-samples-(S1)-at-64-hours-(-80°C)_vs_Unspiked-sewage-samples-(S1)-at-0-hours_UP NA k__Bacteria|p__Campylobacterota|c__Epsilonproteobacteria|o__Campylobacterales|f__Arcobacteraceae|g__Arcobacter k__Bacteria|p__Pseudomonadota|c__Gammaproteobacteria|o__Aeromonadales|f__Aeromonadaceae|g__Aeromonas -bsdb:1048/146/2_Microbiome:Unspiked-sewage-samples-(S1)-at-64-hours-(-80°C)_vs_Unspiked-sewage-samples-(S1)-at-0-hours_DOWN NA k__Bacteria|p__Pseudomonadota|c__Gammaproteobacteria|o__Moraxellales|f__Moraxellaceae|g__Acinetobacter k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Tannerellaceae|g__Parabacteroides k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella -bsdb:1048/147/1_Microbiome:Unspiked-sewage-samples-(S1)-at-16-hours-(-20°C)_vs_Unspiked-sewage-samples-(S1)-at-0-hours_UP NA k__Bacteria|p__Campylobacterota|c__Epsilonproteobacteria|o__Campylobacterales|f__Arcobacteraceae|g__Arcobacter k__Bacteria|p__Pseudomonadota|c__Gammaproteobacteria|o__Aeromonadales|f__Aeromonadaceae|g__Aeromonas -bsdb:1048/147/2_Microbiome:Unspiked-sewage-samples-(S1)-at-16-hours-(-20°C)_vs_Unspiked-sewage-samples-(S1)-at-0-hours_DOWN NA k__Bacteria|p__Pseudomonadota|c__Gammaproteobacteria|o__Moraxellales|f__Moraxellaceae|g__Acinetobacter k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Tannerellaceae|g__Parabacteroides k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella -bsdb:1048/148/1_Microbiome:Unspiked-sewage-samples-(S1)-at-64-hours-(-20°C)_vs_Unspiked-sewage-samples-(S1)-at-0-hours_UP NA k__Bacteria|p__Campylobacterota|c__Epsilonproteobacteria|o__Campylobacterales|f__Arcobacteraceae|g__Arcobacter k__Bacteria|p__Pseudomonadota|c__Gammaproteobacteria|o__Aeromonadales|f__Aeromonadaceae|g__Aeromonas k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella -bsdb:1048/148/2_Microbiome:Unspiked-sewage-samples-(S1)-at-64-hours-(-20°C)_vs_Unspiked-sewage-samples-(S1)-at-0-hours_DOWN NA k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Tannerellaceae|g__Parabacteroides k__Bacteria|p__Pseudomonadota|c__Gammaproteobacteria|o__Moraxellales|f__Moraxellaceae|g__Acinetobacter -bsdb:1048/149/1_Microbiome:Unspiked-sewage-samples-(S1)-at-16-hours-(5°C)_vs_Unspiked-sewage-samples-(S1)-at-0-hours_UP NA k__Bacteria|p__Campylobacterota|c__Epsilonproteobacteria|o__Campylobacterales|f__Arcobacteraceae|g__Arcobacter k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella k__Bacteria|p__Pseudomonadota|c__Gammaproteobacteria|o__Aeromonadales|f__Aeromonadaceae|g__Aeromonas -bsdb:1048/149/2_Microbiome:Unspiked-sewage-samples-(S1)-at-16-hours-(5°C)_vs_Unspiked-sewage-samples-(S1)-at-0-hours_DOWN NA k__Bacteria|p__Pseudomonadota|c__Gammaproteobacteria|o__Moraxellales|f__Moraxellaceae|g__Acinetobacter k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Tannerellaceae|g__Parabacteroides -bsdb:1048/150/1_Microbiome:Unspiked-sewage-samples-(S1)-at-64-hours-(5°C)_vs_Unspiked-sewage-samples-(S1)-at-0-hours_UP NA k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Tannerellaceae|g__Parabacteroides k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella k__Bacteria|p__Pseudomonadota|c__Gammaproteobacteria|o__Aeromonadales|f__Aeromonadaceae|g__Aeromonas -bsdb:1048/150/2_Microbiome:Unspiked-sewage-samples-(S1)-at-64-hours-(5°C)_vs_Unspiked-sewage-samples-(S1)-at-0-hours_DOWN NA k__Bacteria|p__Campylobacterota|c__Epsilonproteobacteria|o__Campylobacterales|f__Arcobacteraceae|g__Arcobacter k__Bacteria|p__Pseudomonadota|c__Gammaproteobacteria|o__Moraxellales|f__Moraxellaceae|g__Acinetobacter -bsdb:1048/151/1_Microbiome:Unspiked-sewage-samples-(S1)-at-16-hours-(22°C)_vs_Unspiked-sewage-samples-(S1)-at-0-hours_UP NA k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Tannerellaceae|g__Parabacteroides k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella k__Bacteria|p__Pseudomonadota|c__Gammaproteobacteria|o__Aeromonadales|f__Aeromonadaceae|g__Aeromonas -bsdb:1048/151/2_Microbiome:Unspiked-sewage-samples-(S1)-at-16-hours-(22°C)_vs_Unspiked-sewage-samples-(S1)-at-0-hours_DOWN NA k__Bacteria|p__Campylobacterota|c__Epsilonproteobacteria|o__Campylobacterales|f__Arcobacteraceae|g__Arcobacter k__Bacteria|p__Pseudomonadota|c__Gammaproteobacteria|o__Moraxellales|f__Moraxellaceae|g__Acinetobacter -bsdb:1048/152/1_Microbiome:Unspiked-sewage-samples-(S1)-at-64-hours-(22°C)_vs_Unspiked-sewage-samples-(S1)-at-0-hours_UP NA k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella k__Bacteria|p__Pseudomonadota|c__Gammaproteobacteria|o__Aeromonadales|f__Aeromonadaceae|g__Aeromonas -bsdb:1048/152/2_Microbiome:Unspiked-sewage-samples-(S1)-at-64-hours-(22°C)_vs_Unspiked-sewage-samples-(S1)-at-0-hours_DOWN NA k__Bacteria|p__Campylobacterota|c__Epsilonproteobacteria|o__Campylobacterales|f__Arcobacteraceae|g__Arcobacter k__Bacteria|p__Pseudomonadota|c__Gammaproteobacteria|o__Moraxellales|f__Moraxellaceae|g__Acinetobacter k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Tannerellaceae|g__Parabacteroides -bsdb:1048/153/1_Microbiome:Unspiked-sewage-samples-(S1)-at-64-hours-(-80°C)_vs_Unspiked-sewage-samples-(S1)-at-16-hours-(-80°C)_UP NA k__Bacteria|p__Pseudomonadota|c__Gammaproteobacteria|o__Aeromonadales|f__Aeromonadaceae|g__Aeromonas -bsdb:1048/153/2_Microbiome:Unspiked-sewage-samples-(S1)-at-64-hours-(-80°C)_vs_Unspiked-sewage-samples-(S1)-at-16-hours-(-80°C)_DOWN NA k__Bacteria|p__Campylobacterota|c__Epsilonproteobacteria|o__Campylobacterales|f__Arcobacteraceae|g__Arcobacter k__Bacteria|p__Pseudomonadota|c__Gammaproteobacteria|o__Moraxellales|f__Moraxellaceae|g__Acinetobacter k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Tannerellaceae|g__Parabacteroides k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella -bsdb:1048/154/1_Microbiome:Unspiked-sewage-samples-(S1)-at-16-hours-(-20°C)_vs_Unspiked-sewage-samples-(S1)-at-16-hours-(-80°C)_UP NA k__Bacteria|p__Pseudomonadota|c__Gammaproteobacteria|o__Moraxellales|f__Moraxellaceae|g__Acinetobacter -bsdb:1048/154/2_Microbiome:Unspiked-sewage-samples-(S1)-at-16-hours-(-20°C)_vs_Unspiked-sewage-samples-(S1)-at-16-hours-(-80°C)_DOWN NA k__Bacteria|p__Campylobacterota|c__Epsilonproteobacteria|o__Campylobacterales|f__Arcobacteraceae|g__Arcobacter k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Tannerellaceae|g__Parabacteroides k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella k__Bacteria|p__Pseudomonadota|c__Gammaproteobacteria|o__Aeromonadales|f__Aeromonadaceae|g__Aeromonas -bsdb:1048/155/1_Microbiome:Unspiked-sewage-samples-(S1)-at-64-hours-(-20°C)_vs_Unspiked-sewage-samples-(S1)-at-16-hours-(-80°C)_UP NA k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella -bsdb:1048/155/2_Microbiome:Unspiked-sewage-samples-(S1)-at-64-hours-(-20°C)_vs_Unspiked-sewage-samples-(S1)-at-16-hours-(-80°C)_DOWN NA k__Bacteria|p__Campylobacterota|c__Epsilonproteobacteria|o__Campylobacterales|f__Arcobacteraceae|g__Arcobacter k__Bacteria|p__Pseudomonadota|c__Gammaproteobacteria|o__Moraxellales|f__Moraxellaceae|g__Acinetobacter k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Tannerellaceae|g__Parabacteroides k__Bacteria|p__Pseudomonadota|c__Gammaproteobacteria|o__Aeromonadales|f__Aeromonadaceae|g__Aeromonas -bsdb:1048/156/1_Microbiome:Unspiked-sewage-samples-(S1)-at-16-hours-(5°C)_vs_Unspiked-sewage-samples-(S1)-at-16-hours-(-80°C)_UP NA k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Tannerellaceae|g__Parabacteroides k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella -bsdb:1048/156/2_Microbiome:Unspiked-sewage-samples-(S1)-at-16-hours-(5°C)_vs_Unspiked-sewage-samples-(S1)-at-16-hours-(-80°C)_DOWN NA k__Bacteria|p__Campylobacterota|c__Epsilonproteobacteria|o__Campylobacterales|f__Arcobacteraceae|g__Arcobacter k__Bacteria|p__Pseudomonadota|c__Gammaproteobacteria|o__Moraxellales|f__Moraxellaceae|g__Acinetobacter k__Bacteria|p__Pseudomonadota|c__Gammaproteobacteria|o__Aeromonadales|f__Aeromonadaceae|g__Aeromonas -bsdb:1048/157/1_Microbiome:Unspiked-sewage-samples-(S1)-at-64-hours-(5°C)_vs_Unspiked-sewage-samples-(S1)-at-16-hours-(-80°C)_UP NA k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Tannerellaceae|g__Parabacteroides -bsdb:1048/157/2_Microbiome:Unspiked-sewage-samples-(S1)-at-64-hours-(5°C)_vs_Unspiked-sewage-samples-(S1)-at-16-hours-(-80°C)_DOWN NA k__Bacteria|p__Campylobacterota|c__Epsilonproteobacteria|o__Campylobacterales|f__Arcobacteraceae|g__Arcobacter k__Bacteria|p__Pseudomonadota|c__Gammaproteobacteria|o__Moraxellales|f__Moraxellaceae|g__Acinetobacter k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella k__Bacteria|p__Pseudomonadota|c__Gammaproteobacteria|o__Aeromonadales|f__Aeromonadaceae|g__Aeromonas -bsdb:1048/158/1_Microbiome:Unspiked-sewage-samples-(S1)-at-16-hours-(22°C)_vs_Unspiked-sewage-samples-(S1)-at-16-hours-(-80°C)_UP NA k__Bacteria|p__Pseudomonadota|c__Gammaproteobacteria|o__Moraxellales|f__Moraxellaceae|g__Acinetobacter k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Tannerellaceae|g__Parabacteroides k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella -bsdb:1048/158/2_Microbiome:Unspiked-sewage-samples-(S1)-at-16-hours-(22°C)_vs_Unspiked-sewage-samples-(S1)-at-16-hours-(-80°C)_DOWN NA k__Bacteria|p__Campylobacterota|c__Epsilonproteobacteria|o__Campylobacterales|f__Arcobacteraceae|g__Arcobacter k__Bacteria|p__Pseudomonadota|c__Gammaproteobacteria|o__Aeromonadales|f__Aeromonadaceae|g__Aeromonas -bsdb:1048/159/1_Microbiome:Unspiked-sewage-samples-(S1)-at-64-hours-(22°C)_vs_Unspiked-sewage-samples-(S1)-at-16-hours-(-80°C)_UP NA k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella k__Bacteria|p__Pseudomonadota|c__Gammaproteobacteria|o__Aeromonadales|f__Aeromonadaceae|g__Aeromonas -bsdb:1048/159/2_Microbiome:Unspiked-sewage-samples-(S1)-at-64-hours-(22°C)_vs_Unspiked-sewage-samples-(S1)-at-16-hours-(-80°C)_DOWN NA k__Bacteria|p__Campylobacterota|c__Epsilonproteobacteria|o__Campylobacterales|f__Arcobacteraceae|g__Arcobacter k__Bacteria|p__Pseudomonadota|c__Gammaproteobacteria|o__Moraxellales|f__Moraxellaceae|g__Acinetobacter k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Tannerellaceae|g__Parabacteroides -bsdb:1048/160/1_Microbiome:Unspiked-sewage-samples-(S1)-at-16-hours-(-20°C)_vs_Unspiked-sewage-samples-(S1)-at-64-hours-(-80°C)_UP NA k__Bacteria|p__Campylobacterota|c__Epsilonproteobacteria|o__Campylobacterales|f__Arcobacteraceae|g__Arcobacter k__Bacteria|p__Pseudomonadota|c__Gammaproteobacteria|o__Moraxellales|f__Moraxellaceae|g__Acinetobacter k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Tannerellaceae|g__Parabacteroides k__Bacteria|p__Pseudomonadota|c__Gammaproteobacteria|o__Aeromonadales|f__Aeromonadaceae|g__Aeromonas -bsdb:1048/160/2_Microbiome:Unspiked-sewage-samples-(S1)-at-16-hours-(-20°C)_vs_Unspiked-sewage-samples-(S1)-at-64-hours-(-80°C)_DOWN NA k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella -bsdb:1048/161/1_Microbiome:Unspiked-sewage-samples-(S1)-at-64-hours-(-20°C)_vs_Unspiked-sewage-samples-(S1)-at-64-hours-(-80°C)_UP NA k__Bacteria|p__Campylobacterota|c__Epsilonproteobacteria|o__Campylobacterales|f__Arcobacteraceae|g__Arcobacter k__Bacteria|p__Pseudomonadota|c__Gammaproteobacteria|o__Moraxellales|f__Moraxellaceae|g__Acinetobacter k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Tannerellaceae|g__Parabacteroides k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella -bsdb:1048/161/2_Microbiome:Unspiked-sewage-samples-(S1)-at-64-hours-(-20°C)_vs_Unspiked-sewage-samples-(S1)-at-64-hours-(-80°C)_DOWN NA k__Bacteria|p__Pseudomonadota|c__Gammaproteobacteria|o__Aeromonadales|f__Aeromonadaceae|g__Aeromonas -bsdb:1048/162/1_Microbiome:Unspiked-sewage-samples-(S1)-at-16-hours-(5°C)_vs_Unspiked-sewage-samples-(S1)-at-64-hours-(-80°C)_UP NA k__Bacteria|p__Campylobacterota|c__Epsilonproteobacteria|o__Campylobacterales|f__Arcobacteraceae|g__Arcobacter k__Bacteria|p__Pseudomonadota|c__Gammaproteobacteria|o__Moraxellales|f__Moraxellaceae|g__Acinetobacter k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Tannerellaceae|g__Parabacteroides k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella -bsdb:1048/162/2_Microbiome:Unspiked-sewage-samples-(S1)-at-16-hours-(5°C)_vs_Unspiked-sewage-samples-(S1)-at-64-hours-(-80°C)_DOWN NA k__Bacteria|p__Pseudomonadota|c__Gammaproteobacteria|o__Aeromonadales|f__Aeromonadaceae|g__Aeromonas -bsdb:1048/207/1_Microbiome:Unspiked-sewage-samples-(S2)-at-16-hours-(5°C)_vs_Unspiked-sewage-samples-(S2)-at-64-hours-(-20°C)_UP NA k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Tannerellaceae|g__Parabacteroides -bsdb:1048/207/2_Microbiome:Unspiked-sewage-samples-(S2)-at-16-hours-(5°C)_vs_Unspiked-sewage-samples-(S2)-at-64-hours-(-20°C)_DOWN NA k__Bacteria|p__Campylobacterota|c__Epsilonproteobacteria|o__Campylobacterales|f__Arcobacteraceae|g__Arcobacter k__Bacteria|p__Pseudomonadota|c__Gammaproteobacteria|o__Moraxellales|f__Moraxellaceae|g__Acinetobacter k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella k__Bacteria|p__Pseudomonadota|c__Gammaproteobacteria|o__Aeromonadales|f__Aeromonadaceae|g__Aeromonas bsdb:1049/1/1_Atopic-eczema:cADtreat-dogs_vs_Healthy-dogs_UP NA k__Bacteria|k__Bacillati|p__Actinomycetota k__Bacteria|k__Pseudomonadati|p__Bacteroidota bsdb:1049/1/2_Atopic-eczema:cADtreat-dogs_vs_Healthy-dogs_DOWN NA k__Bacteria|k__Bacillati|p__Actinomycetota|c__Actinomycetes|o__Micrococcales|f__Micrococcaceae|g__Arthrobacter k__Bacteria|k__Bacillati|p__Actinomycetota|c__Actinomycetes|o__Mycobacteriales|f__Corynebacteriaceae|g__Corynebacterium k__Bacteria|k__Pseudomonadati|p__Pseudomonadota bsdb:1049/2/1_Atopic-eczema:cADpost-dogs_vs_cADpre-dogs_DOWN NA k__Bacteria|k__Bacillati|p__Actinomycetota|c__Actinomycetes|o__Micrococcales|f__Micrococcaceae|g__Arthrobacter k__Bacteria|k__Bacillati|p__Bacillota|c__Bacilli|o__Bacillales|f__Bacillaceae|g__Bacillus k__Bacteria|k__Thermotogati|p__Deinococcota|c__Deinococci|o__Deinococcales|f__Deinococcaceae|g__Deinococcus k__Bacteria|k__Pseudomonadati|p__Pseudomonadota|c__Gammaproteobacteria|o__Pseudomonadales|f__Pseudomonadaceae|g__Pseudomonas k__Bacteria|k__Pseudomonadati|p__Pseudomonadota|c__Alphaproteobacteria|o__Rhodospirillales|f__Azospirillaceae|g__Skermanella k__Bacteria|k__Pseudomonadati|p__Pseudomonadota k__Bacteria|k__Pseudomonadati|p__Bacteroidota k__Bacteria|k__Thermotogati|p__Deinococcota @@ -4816,28 +4660,6 @@ bsdb:1049/43/1_Atopic-eczema:cADpre-dogs_vs_Healthy-dogs_UP NA k__Bacteria|k__Ba bsdb:1049/44/1_Atopic-eczema:cADtreat-dogs_vs_Healthy-dogs_DOWN NA k__Bacteria|k__Bacillati|p__Bacillota|c__Bacilli|o__Bacillales|f__Staphylococcaceae|g__Staphylococcus|s__Staphylococcus equorum k__Bacteria|k__Pseudomonadati|p__Pseudomonadota|c__Gammaproteobacteria|o__Moraxellales|f__Moraxellaceae|g__Moraxella bsdb:1049/44/2_Atopic-eczema:cADtreat-dogs_vs_Healthy-dogs_UP NA k__Bacteria|k__Bacillati|p__Bacillota|c__Bacilli|o__Bacillales|f__Staphylococcaceae|g__Staphylococcus|s__Staphylococcus epidermidis k__Bacteria|k__Bacillati|p__Bacillota|c__Bacilli|o__Bacillales|f__Staphylococcaceae|g__Staphylococcus|s__Staphylococcus hominis k__Bacteria|k__Pseudomonadati|p__Pseudomonadota|c__Betaproteobacteria|o__Burkholderiales|f__Burkholderiaceae|g__Lautropia bsdb:1049/45/1_Atopic-eczema:cADpost-dogs_vs_cADpre-dogs_UP NA k__Bacteria|k__Bacillati|p__Bacillota|c__Bacilli|o__Bacillales|f__Staphylococcaceae|g__Staphylococcus|s__Staphylococcus hominis -bsdb:1049/46/1_Atopic-eczema:cADtreat-dogs_vs_Healthy-dogs_UP NA k__Bacteria|k__Pseudomonadati|p__Pseudomonadota -bsdb:1049/47/1_Atopic-eczema:cADpre-dogs_vs_Healthy-dogs_UP NA k__Bacteria|k__Bacillati|p__Bacillota|c__Bacilli|o__Bacillales|f__Staphylococcaceae|g__Staphylococcus -bsdb:1049/48/1_Atopic-eczema:cADpost-dogs_vs_cADpre-dogs_DOWN NA k__Bacteria|k__Bacillati|p__Bacillota|c__Bacilli|o__Bacillales|f__Staphylococcaceae|g__Staphylococcus -bsdb:1049/49/1_Atopic-eczema:cADpre-dogs_vs_Healthy-dogs_UP NA k__Bacteria|k__Bacillati|p__Bacillota|c__Bacilli|o__Bacillales|f__Staphylococcaceae|g__Staphylococcus -bsdb:1049/50/1_Atopic-eczema:cADpre-dogs_vs_Healthy-dogs_UP NA k__Bacteria|k__Bacillati|p__Bacillota|c__Bacilli|o__Bacillales|f__Staphylococcaceae|g__Staphylococcus -bsdb:1049/51/1_Atopic-eczema:cADpost-dogs_vs_cADpre-dogs_DOWN NA k__Bacteria|k__Bacillati|p__Bacillota|c__Bacilli|o__Bacillales|f__Staphylococcaceae|g__Staphylococcus -bsdb:1049/52/1_Atopic-eczema:cADtreat-dogs_vs_cADpre-dogs_DOWN NA k__Bacteria|k__Bacillati|p__Bacillota|c__Bacilli|o__Bacillales|f__Staphylococcaceae|g__Staphylococcus -bsdb:1049/53/1_Atopic-eczema:cADpre-dogs_vs_Healthy-dogs_UP NA k__Bacteria|k__Bacillati|p__Bacillota|c__Bacilli|o__Bacillales|f__Staphylococcaceae|g__Staphylococcus -bsdb:1049/54/1_Atopic-eczema:cADpre-dogs_vs_Healthy-dogs_UP NA k__Bacteria|k__Bacillati|p__Bacillota|c__Bacilli|o__Bacillales|f__Staphylococcaceae|g__Staphylococcus -bsdb:1049/55/1_Atopic-eczema:cADpost-dogs_vs_cADpre-dogs_DOWN NA k__Bacteria|k__Bacillati|p__Bacillota|c__Bacilli|o__Bacillales|f__Staphylococcaceae|g__Staphylococcus -bsdb:1049/56/1_Atopic-eczema:cADtreat-dogs_vs_cADpre-dogs_DOWN NA k__Bacteria|k__Bacillati|p__Bacillota|c__Bacilli|o__Bacillales|f__Staphylococcaceae|g__Staphylococcus -bsdb:1049/57/1_Atopic-eczema:cADpre-dogs_vs_Healthy-dogs_UP NA k__Bacteria|k__Bacillati|p__Bacillota|c__Bacilli|o__Bacillales|f__Staphylococcaceae|g__Staphylococcus -bsdb:1049/58/1_Atopic-eczema:cADpost-dogs_vs_cADpre-dogs_DOWN NA k__Bacteria|k__Bacillati|p__Bacillota|c__Bacilli|o__Bacillales|f__Staphylococcaceae|g__Staphylococcus -bsdb:1049/59/1_Atopic-eczema:Mitochondrial-haplogroups-C_vs_Mitochondrial-haplogroups-A_DOWN NA k__Bacteria|k__Bacillati|p__Actinomycetota k__Bacteria|k__Pseudomonadati|p__Campylobacterota k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Anaerostipes k__Bacteria|k__Bacillati|p__Bacillota k__Bacteria|k__Bacillati|p__Bacillota|c__Bacilli|o__Lactobacillales|f__Streptococcaceae|g__Streptococcus k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Anaerotignaceae|g__Anaerotignum k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Blautia k__Bacteria|k__Bacillati|p__Bacillota|c__Erysipelotrichia|o__Erysipelotrichales|f__Erysipelotrichaceae|g__Amedibacterium -bsdb:1049/60/1_Atopic-eczema:Mitochondrial-haplogroups-C_vs_Mitochondrial-haplogroups-A_DOWN NA k__Bacteria|k__Bacillati|p__Actinomycetota k__Bacteria|k__Bacillati|p__Actinomycetota|c__Actinomycetes|o__Micrococcales|f__Micrococcaceae|g__Arthrobacter k__Bacteria|k__Pseudomonadati|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Bacteroidaceae|g__Bacteroides -bsdb:1049/61/1_Atopic-eczema:Mitochondrial-haplogroups-C_vs_Mitochondrial-haplogroups-A_UP NA k__Bacteria|k__Pseudomonadati|p__Bacteroidota -bsdb:1049/61/2_Atopic-eczema:Mitochondrial-haplogroups-C_vs_Mitochondrial-haplogroups-A_DOWN NA k__Bacteria|k__Pseudomonadati|p__Pseudomonadota|c__Alphaproteobacteria|o__Rhodobacterales|f__Roseobacteraceae|g__Rubellimicrobium k__Bacteria|k__Pseudomonadati|p__Pseudomonadota|c__Gammaproteobacteria|o__Pasteurellales|f__Pasteurellaceae|g__Haemophilus -bsdb:1049/62/1_Atopic-eczema:Mitochondrial-haplogroups-C_vs_Mitochondrial-haplogroups-A_UP NA k__Bacteria|k__Bacillati|p__Actinomycetota|c__Actinomycetes|o__Micrococcales|f__Micrococcaceae|g__Rothia k__Bacteria|k__Pseudomonadati|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Tannerellaceae|g__Tannerella k__Bacteria|k__Pseudomonadati|p__Pseudomonadota|c__Gammaproteobacteria|o__Lysobacterales|f__Lysobacteraceae|g__Stenotrophomonas -bsdb:1049/62/2_Atopic-eczema:Mitochondrial-haplogroups-C_vs_Mitochondrial-haplogroups-A_DOWN NA k__Bacteria|k__Bacillati|p__Actinomycetota k__Bacteria|k__Pseudomonadati|p__Bacteroidota|c__Flavobacteriia|o__Flavobacteriales|f__Flavobacteriaceae|g__Flavobacterium k__Bacteria|k__Pseudomonadati|p__Pseudomonadota|c__Gammaproteobacteria|o__Pasteurellales|f__Pasteurellaceae|g__Pasteurella -bsdb:1049/63/1_Atopic-eczema:Mitochondrial-haplogroups-C_vs_Mitochondrial-haplogroups-A_DOWN NA k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Roseburia -bsdb:1049/64/1_Atopic-eczema:Mitochondrial-haplogroups-C_vs_Mitochondrial-haplogroups-A_UP NA k__Bacteria|k__Pseudomonadati|p__Pseudomonadota|c__Gammaproteobacteria|o__Pasteurellales|f__Pasteurellaceae|g__Haemophilus -bsdb:1049/64/2_Atopic-eczema:Mitochondrial-haplogroups-C_vs_Mitochondrial-haplogroups-A_DOWN NA k__Bacteria|k__Pseudomonadati|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Bacteroidaceae|g__Bacteroides k__Bacteria|k__Pseudomonadati|p__Bacteroidota|c__Flavobacteriia|o__Flavobacteriales|f__Flavobacteriaceae|g__Capnocytophaga k__Bacteria|k__Pseudomonadati|p__Pseudomonadota|c__Betaproteobacteria|o__Neisseriales|f__Neisseriaceae|g__Neisseria bsdb:1050/1/1_Taxonomic-microbiome-measurement:Esophagus_vs_Oral-cavity_UP NA k__Bacteria|p__Pseudomonadota|c__Alphaproteobacteria|o__Rhodospirillales|f__Acetobacteraceae k__Bacteria|p__Pseudomonadota|c__Gammaproteobacteria|o__Moraxellales|f__Moraxellaceae|g__Acinetobacter k__Bacteria|p__Pseudomonadota|c__Gammaproteobacteria|o__Pasteurellales|f__Pasteurellaceae|g__Actinobacillus k__Bacteria|p__Bacillota|c__Erysipelotrichia|o__Erysipelotrichales|f__Erysipelotrichaceae|g__Allobaculum k__Bacteria|p__Pseudomonadota|c__Alphaproteobacteria k__Bacteria|p__Bacillota|c__Bacilli|o__Bacillales|f__Bacillaceae k__Bacteria|p__Bacillota|c__Bacilli|o__Bacillales k__Bacteria|p__Bacillota|c__Bacilli k__Bacteria|p__Bacillota k__Bacteria|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Blautia k__Bacteria|p__Pseudomonadota|c__Alphaproteobacteria|o__Hyphomicrobiales|f__Nitrobacteraceae|g__Bradyrhizobium k__Bacteria|p__Pseudomonadota|c__Alphaproteobacteria|o__Hyphomicrobiales|f__Brucellaceae k__Bacteria|p__Pseudomonadota|c__Alphaproteobacteria|o__Caulobacterales|f__Caulobacteraceae k__Bacteria|p__Pseudomonadota|c__Alphaproteobacteria|o__Caulobacterales k__Bacteria|p__Bacteroidota|c__Chitinophagia|o__Chitinophagales|f__Chitinophagaceae k__Bacteria|p__Bacteroidota|c__Flavobacteriia|o__Flavobacteriales|f__Weeksellaceae|g__Chryseobacterium k__Bacteria|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Coprococcus k__Bacteria|p__Pseudomonadota|c__Alphaproteobacteria|o__Hyphomicrobiales|g__Enhydrobacter k__Bacteria|p__Pseudomonadota|c__Gammaproteobacteria|o__Enterobacterales k__Bacteria|p__Pseudomonadota|c__Gammaproteobacteria|o__Enterobacterales|f__Enterobacteriaceae k__Bacteria|p__Pseudomonadota|c__Gammaproteobacteria k__Bacteria|p__Bacillota|c__Bacilli|o__Bacillales|f__Gemellaceae k__Bacteria|p__Pseudomonadota|c__Alphaproteobacteria|o__Hyphomicrobiales k__Bacteria|p__Actinomycetota|c__Actinomycetes|o__Micrococcales|f__Intrasporangiaceae k__Bacteria|p__Bacillota|c__Bacilli|o__Lactobacillales k__Bacteria|p__Pseudomonadota|c__Gammaproteobacteria|o__Lysobacterales|f__Lysobacteraceae k__Bacteria|p__Pseudomonadota|c__Gammaproteobacteria|o__Lysobacterales k__Bacteria|p__Pseudomonadota|c__Alphaproteobacteria|o__Hyphomicrobiales|f__Methylobacteriaceae k__Bacteria|p__Pseudomonadota|c__Alphaproteobacteria|o__Hyphomicrobiales|f__Methylobacteriaceae|g__Methylobacterium k__Bacteria|p__Pseudomonadota|c__Alphaproteobacteria|o__Hyphomicrobiales|f__Nitrobacteraceae k__Bacteria|p__Pseudomonadota|c__Alphaproteobacteria|o__Sphingomonadales|f__Sphingomonadaceae|g__Novosphingobium k__Bacteria|p__Pseudomonadota|c__Alphaproteobacteria|o__Hyphomicrobiales|f__Brucellaceae|g__Ochrobactrum k__Bacteria|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Oscillospira k__Bacteria|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae k__Bacteria|p__Pseudomonadota|c__Betaproteobacteria|o__Burkholderiales|f__Oxalobacteraceae k__Bacteria|p__Pseudomonadota|c__Gammaproteobacteria|o__Pasteurellales|f__Pasteurellaceae k__Bacteria|p__Pseudomonadota|c__Gammaproteobacteria|o__Pasteurellales k__Bacteria|p__Pseudomonadota|c__Alphaproteobacteria|o__Caulobacterales|f__Caulobacteraceae|g__Phenylobacterium k__Bacteria|p__Actinomycetota|c__Actinomycetes|o__Propionibacteriales|f__Propionibacteriaceae|g__Propionibacterium k__Bacteria|p__Pseudomonadota|c__Gammaproteobacteria|o__Pseudomonadales|f__Pseudomonadaceae k__Bacteria|p__Pseudomonadota|c__Gammaproteobacteria|o__Pseudomonadales k__Bacteria|p__Pseudomonadota|c__Gammaproteobacteria|o__Pseudomonadales|f__Pseudomonadaceae|g__Pseudomonas k__Bacteria|p__Pseudomonadota|c__Betaproteobacteria|o__Burkholderiales|f__Burkholderiaceae|g__Ralstonia k__Bacteria|p__Pseudomonadota|c__Alphaproteobacteria|o__Rhodospirillales|f__Rhodospirillaceae k__Bacteria|p__Pseudomonadota|c__Alphaproteobacteria|o__Rhodospirillales k__Bacteria|p__Bacteroidota|c__Saprospiria|o__Saprospirales|f__Saprospiraceae|g__Saprospira k__Bacteria|p__Bacteroidota|c__Saprospiria|o__Saprospirales k__Bacteria|p__Bacteroidota|c__Chitinophagia|o__Chitinophagales|f__Chitinophagaceae|g__Sediminibacterium k__Bacteria|p__Pseudomonadota|c__Alphaproteobacteria|o__Sphingomonadales|f__Sphingomonadaceae|g__Sphingobium k__Bacteria|p__Pseudomonadota|c__Alphaproteobacteria|o__Sphingomonadales|f__Sphingomonadaceae k__Bacteria|p__Pseudomonadota|c__Alphaproteobacteria|o__Sphingomonadales k__Bacteria|p__Pseudomonadota|c__Alphaproteobacteria|o__Sphingomonadales|f__Sphingomonadaceae|g__Sphingomonas k__Bacteria|p__Bacillota|c__Bacilli|o__Bacillales|f__Staphylococcaceae k__Bacteria|p__Bacillota|c__Bacilli|o__Bacillales|f__Staphylococcaceae|g__Staphylococcus k__Bacteria|p__Pseudomonadota|c__Gammaproteobacteria|o__Lysobacterales|f__Lysobacteraceae|g__Stenotrophomonas k__Bacteria|p__Bacillota|c__Bacilli|o__Lactobacillales|f__Streptococcaceae k__Bacteria|p__Bacillota|c__Bacilli|o__Lactobacillales|f__Streptococcaceae|g__Streptococcus k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Muribaculaceae bsdb:1050/1/2_Taxonomic-microbiome-measurement:Esophagus_vs_Oral-cavity_DOWN NA k__Bacteria|p__Actinomycetota|c__Actinomycetes|o__Actinomycetales|f__Actinomycetaceae|g__Actinomyces k__Bacteria|p__Actinomycetota|c__Actinomycetes|o__Actinomycetales|f__Actinomycetaceae k__Bacteria|p__Actinomycetota|c__Actinomycetes|o__Actinomycetales k__Bacteria|p__Actinomycetota k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales k__Bacteria|p__Bacteroidota|c__Bacteroidia k__Bacteria|p__Bacteroidota k__Bacteria|p__Pseudomonadota|c__Betaproteobacteria k__Bacteria|p__Pseudomonadota|c__Gammaproteobacteria|o__Cardiobacteriales|f__Cardiobacteriaceae k__Bacteria|p__Pseudomonadota|c__Gammaproteobacteria|o__Cardiobacteriales k__Bacteria|p__Pseudomonadota|c__Gammaproteobacteria|o__Cardiobacteriales|f__Cardiobacteriaceae|g__Cardiobacterium k__Bacteria|p__Pseudomonadota|c__Betaproteobacteria|o__Neisseriales|f__Neisseriaceae|g__Neisseria k__Bacteria|p__Pseudomonadota|c__Betaproteobacteria|o__Neisseriales|f__Neisseriaceae k__Bacteria|p__Pseudomonadota|c__Betaproteobacteria|o__Neisseriales k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Paludibacteraceae|g__Paludibacter k__Bacteria|p__Bacillota|c__Negativicutes|o__Selenomonadales|f__Selenomonadaceae|g__Selenomonas k__Bacteria|p__Candidatus Saccharibacteria bsdb:1050/2/1_Taxonomic-microbiome-measurement:Supragingival-plaque_vs_Saliva-and-tongue-dorsum_UP NA k__Bacteria|p__Bacteroidota k__Bacteria|p__Campylobacterota|c__Epsilonproteobacteria k__Bacteria|p__Bacteroidota|c__Flavobacteriia k__Bacteria|p__Fusobacteriota k__Bacteria|p__Fusobacteriota|c__Fusobacteriia k__Bacteria|p__Spirochaetota|c__Spirochaetia k__Bacteria|p__Spirochaetota diff --git a/bugsigdb_signatures_mixed_ncbi.gmt b/bugsigdb_signatures_mixed_ncbi.gmt index 1a0490bbe..326fd5532 100644 --- a/bugsigdb_signatures_mixed_ncbi.gmt +++ b/bugsigdb_signatures_mixed_ncbi.gmt @@ -1,4 +1,4 @@ -# BugSigDB 2025-01-25_15:58_UTC, License: Creative Commons Attribution 4.0 International, URL: https://bugsigdb.org +# BugSigDB 2025-01-26_10:58_UTC, License: Creative Commons Attribution 4.0 International, URL: https://bugsigdb.org bsdb:1/1/1_Colorectal-adenoma:conventional-adenoma-cases_vs_controls_UP NA 91061 1236 1654 1716 1301 162289 189330 33024 40544 2037 2049 506 186826 1300 31977 91347 1653 57037 1386 186817 bsdb:1/1/2_Colorectal-adenoma:conventional-adenoma-cases_vs_controls_DOWN NA 100883 1117 bsdb:1/2/1_Hyperplastic-Polyp:hyperplastic-polyp-cases_vs_controls_UP NA 207244 57037 @@ -4592,162 +4592,6 @@ bsdb:1048/44/1_Microbiome:Unspiked-pig-feces(P1)-at-16-hours-(5°C)_vs_Unspiked- bsdb:1048/44/2_Microbiome:Unspiked-pig-feces(P1)-at-16-hours-(5°C)_vs_Unspiked-pig-feces(P1)-at-16-hours-(-80°C)_DOWN NA 838 33024 bsdb:1048/45/1_Microbiome:Unspiked-pig-feces(P1)-at-64-hours-(5°C)_vs_Unspiked-pig-feces(P1)-at-16-hours-(-80°C)_UP NA 157 216851 33024 841 bsdb:1048/45/2_Microbiome:Unspiked-pig-feces(P1)-at-64-hours-(5°C)_vs_Unspiked-pig-feces(P1)-at-16-hours-(-80°C)_DOWN NA 838 -bsdb:1048/46/1_Microbiome:Unspiked-pig-feces(P1)-at-16-hours-(22°C)_vs_Unspiked-pig-feces(P1)-at-16-hours-(-80°C)_UP NA 157 216851 841 -bsdb:1048/46/2_Microbiome:Unspiked-pig-feces(P1)-at-16-hours-(22°C)_vs_Unspiked-pig-feces(P1)-at-16-hours-(-80°C)_DOWN NA 838 33024 -bsdb:1048/47/1_Microbiome:Unspiked-pig-feces(P1)-at-64-hours-(22°C)_vs_Unspiked-pig-feces(P1)-at-16-hours-(-80°C)_UP NA 157 216851 -bsdb:1048/47/2_Microbiome:Unspiked-pig-feces(P1)-at-64-hours-(22°C)_vs_Unspiked-pig-feces(P1)-at-16-hours-(-80°C)_DOWN NA 838 -bsdb:1048/48/1_Microbiome:Unspiked-pig-feces(P1)-at-16-hours-(-20°C)_vs_Unspiked-pig-feces(P1)-at-64-hours-(-80°C)_UP NA 216851 841 -bsdb:1048/48/2_Microbiome:Unspiked-pig-feces(P1)-at-16-hours-(-20°C)_vs_Unspiked-pig-feces(P1)-at-64-hours-(-80°C)_DOWN NA 838 157 33024 -bsdb:1048/49/1_Microbiome:Unspiked-pig-feces(P1)-at-64-hours-(-20°C)_vs_Unspiked-pig-feces(P1)-at-64-hours-(-80°C)_UP NA 157 216851 841 -bsdb:1048/49/2_Microbiome:Unspiked-pig-feces(P1)-at-64-hours-(-20°C)_vs_Unspiked-pig-feces(P1)-at-64-hours-(-80°C)_DOWN NA 838 33024 -bsdb:1048/50/1_Microbiome:Unspiked-pig-feces(P1)-at-16-hours-(5°C)_vs_Unspiked-pig-feces(P1)-at-64-hours-(-80°C)_UP NA 157 216851 841 -bsdb:1048/50/2_Microbiome:Unspiked-pig-feces(P1)-at-16-hours-(5°C)_vs_Unspiked-pig-feces(P1)-at-64-hours-(-80°C)_DOWN NA 838 33024 -bsdb:1048/51/1_Microbiome:Unspiked-pig-feces(P1)-at-64-hours-(5°C)_vs_Unspiked-pig-feces(P1)-at-64-hours-(-80°C)_UP NA 216851 841 -bsdb:1048/51/2_Microbiome:Unspiked-pig-feces(P1)-at-64-hours-(5°C)_vs_Unspiked-pig-feces(P1)-at-64-hours-(-80°C)_DOWN NA 838 157 33024 -bsdb:1048/52/1_Microbiome:Unspiked-pig-feces(P1)-at-16-hours-(22°C)_vs_Unspiked-pig-feces(P1)-at-64-hours-(-80°C)_UP NA 157 216851 33024 841 -bsdb:1048/52/2_Microbiome:Unspiked-pig-feces(P1)-at-16-hours-(22°C)_vs_Unspiked-pig-feces(P1)-at-64-hours-(-80°C)_DOWN NA 838 -bsdb:1048/53/1_Microbiome:Unspiked-pig-feces(P1)-at-64-hours-(22°C)_vs_Unspiked-pig-feces(P1)-at-64-hours-(-80°C)_UP NA 157 216851 33024 841 -bsdb:1048/53/2_Microbiome:Unspiked-pig-feces(P1)-at-64-hours-(22°C)_vs_Unspiked-pig-feces(P1)-at-64-hours-(-80°C)_DOWN NA 838 -bsdb:1048/54/1_Microbiome:Unspiked-pig-feces(P1)-at-64-hours-(-20°C)_vs_Unspiked-pig-feces(P1)-at-16-hours-(-20°C)_UP NA 157 -bsdb:1048/54/2_Microbiome:Unspiked-pig-feces(P1)-at-64-hours-(-20°C)_vs_Unspiked-pig-feces(P1)-at-16-hours-(-20°C)_DOWN NA 838 33024 216851 841 -bsdb:1048/55/1_Microbiome:Unspiked-pig-feces(P1)-at-16-hours-(5°C)_vs_Unspiked-pig-feces(P1)-at-16-hours-(-20°C)_UP NA 157 216851 841 -bsdb:1048/55/2_Microbiome:Unspiked-pig-feces(P1)-at-16-hours-(5°C)_vs_Unspiked-pig-feces(P1)-at-16-hours-(-20°C)_DOWN NA 838 33024 -bsdb:1048/56/1_Microbiome:Unspiked-pig-feces(P1)-at-64-hours-(5°C)_vs_Unspiked-pig-feces(P1)-at-16-hours-(-20°C)_UP NA 157 216851 33024 841 -bsdb:1048/56/2_Microbiome:Unspiked-pig-feces(P1)-at-64-hours-(5°C)_vs_Unspiked-pig-feces(P1)-at-16-hours-(-20°C)_DOWN NA 838 -bsdb:1048/57/1_Microbiome:Unspiked-pig-feces(P1)-at-16-hours-(22°C)_vs_Unspiked-pig-feces(P1)-at-16-hours-(-20°C)_UP NA 157 216851 33024 841 -bsdb:1048/57/2_Microbiome:Unspiked-pig-feces(P1)-at-16-hours-(22°C)_vs_Unspiked-pig-feces(P1)-at-16-hours-(-20°C)_DOWN NA 838 -bsdb:1048/58/1_Microbiome:Unspiked-pig-feces(P1)-at-64-hours-(22°C)_vs_Unspiked-pig-feces(P1)-at-16-hours-(-20°C)_UP NA 157 216851 33024 841 -bsdb:1048/58/2_Microbiome:Unspiked-pig-feces(P1)-at-64-hours-(22°C)_vs_Unspiked-pig-feces(P1)-at-16-hours-(-20°C)_DOWN NA 838 -bsdb:1048/62/1_Microbiome:Unspiked-pig-feces(P1)-at-16-hours-(5°C)_vs_Unspiked-pig-feces(P1)-at-64-hours-(-20°C)_UP NA 157 216851 -bsdb:1048/62/2_Microbiome:Unspiked-pig-feces(P1)-at-16-hours-(5°C)_vs_Unspiked-pig-feces(P1)-at-64-hours-(-20°C)_DOWN NA 838 33024 841 -bsdb:1048/64/1_Microbiome:Unspiked-pig-feces(P1)-at-64-hours-(5°C)_vs_Unspiked-pig-feces(P1)-at-64-hours-(-20°C)_UP NA 216851 33024 841 -bsdb:1048/64/2_Microbiome:Unspiked-pig-feces(P1)-at-64-hours-(5°C)_vs_Unspiked-pig-feces(P1)-at-64-hours-(-20°C)_DOWN NA 838 157 -bsdb:1048/65/1_Microbiome:Unspiked-pig-feces(P1)-at-16-hours-(22°C)_vs_Unspiked-pig-feces(P1)-at-64-hours-(-20°C)_UP NA 157 216851 33024 841 -bsdb:1048/65/2_Microbiome:Unspiked-pig-feces(P1)-at-16-hours-(22°C)_vs_Unspiked-pig-feces(P1)-at-64-hours-(-20°C)_DOWN NA 838 -bsdb:1048/66/1_Microbiome:Unspiked-pig-feces(P1)-at-64-hours-(22°C)_vs_Unspiked-pig-feces(P1)-at-64-hours-(-20°C)_UP NA 157 33024 216851 841 -bsdb:1048/66/2_Microbiome:Unspiked-pig-feces(P1)-at-64-hours-(22°C)_vs_Unspiked-pig-feces(P1)-at-64-hours-(-20°C)_DOWN NA 838 -bsdb:1048/67/1_Microbiome:Unspiked-pig-feces(P1)-at-64-hours-(5°C)_vs_Unspiked-pig-feces(P1)-at-16-hours-(5°C)_UP NA 157 216851 841 -bsdb:1048/67/2_Microbiome:Unspiked-pig-feces(P1)-at-64-hours-(5°C)_vs_Unspiked-pig-feces(P1)-at-16-hours-(5°C)_DOWN NA 838 33024 -bsdb:1048/68/1_Microbiome:Unspiked-pig-feces(P1)-at-16-hours-(22°C)_vs_Unspiked-pig-feces(P1)-at-16-hours-(5°C)_UP NA 157 216851 33024 841 -bsdb:1048/68/2_Microbiome:Unspiked-pig-feces(P1)-at-16-hours-(22°C)_vs_Unspiked-pig-feces(P1)-at-16-hours-(5°C)_DOWN NA 838 -bsdb:1048/69/1_Microbiome:Unspiked-pig-feces(P1)-at-64-hours-(22°C)_vs_Unspiked-pig-feces(P1)-at-16-hours-(5°C)_UP NA 216851 33024 841 -bsdb:1048/69/2_Microbiome:Unspiked-pig-feces(P1)-at-64-hours-(22°C)_vs_Unspiked-pig-feces(P1)-at-16-hours-(5°C)_DOWN NA 838 157 -bsdb:1048/70/1_Microbiome:Unspiked-pig-feces(P1)-at-16-hours-(22°C)_vs_Unspiked-pig-feces(P1)-at-64-hours-(5°C)_UP NA 157 216851 -bsdb:1048/70/2_Microbiome:Unspiked-pig-feces(P1)-at-16-hours-(22°C)_vs_Unspiked-pig-feces(P1)-at-64-hours-(5°C)_DOWN NA 838 33024 841 -bsdb:1048/71/1_Microbiome:Unspiked-pig-feces(P1)-at-64-hours-(22°C)_vs_Unspiked-pig-feces(P1)-at-64-hours-(5°C)_UP NA 157 216851 -bsdb:1048/71/2_Microbiome:Unspiked-pig-feces(P1)-at-64-hours-(22°C)_vs_Unspiked-pig-feces(P1)-at-64-hours-(5°C)_DOWN NA 838 33024 841 -bsdb:1048/72/1_Microbiome:Unspiked-pig-feces(P1)-at-64-hours-(22°C)_vs_Unspiked-pig-feces(P1)-at-16-hours-(22°C)_UP NA 157 216851 -bsdb:1048/72/2_Microbiome:Unspiked-pig-feces(P1)-at-64-hours-(22°C)_vs_Unspiked-pig-feces(P1)-at-16-hours-(22°C)_DOWN NA 838 33024 841 -bsdb:1048/109/1_Microbiome:Unspiked-pig-feces(P2)-at-16-hours-(-80°C)_vs_Unspiked-pig-feces(P2)-at-0-hour_UP NA 33024 838 841 -bsdb:1048/109/2_Microbiome:Unspiked-pig-feces(P2)-at-16-hours-(-80°C)_vs_Unspiked-pig-feces(P2)-at-0-hour_DOWN NA 216851 157 -bsdb:1048/110/1_Microbiome:Unspiked-pig-feces(P2)-at-64-hours-(-80°C)_vs_Unspiked-pig-feces(P2)-at-0-hour_UP NA 838 -bsdb:1048/110/2_Microbiome:Unspiked-pig-feces(P2)-at-64-hours-(-80°C)_vs_Unspiked-pig-feces(P2)-at-0-hour_DOWN NA 216851 33024 841 157 -bsdb:1048/111/1_Microbiome:Unspiked-pig-feces(P2)-at-16-hours-(-20°C)_vs_Unspiked-pig-feces(P2)-at-0-hour_UP NA 838 33024 841 -bsdb:1048/111/2_Microbiome:Unspiked-pig-feces(P2)-at-16-hours-(-20°C)_vs_Unspiked-pig-feces(P2)-at-0-hour_DOWN NA 157 216851 -bsdb:1048/112/1_Microbiome:Unspiked-pig-feces(P2)-at-64-hours-(-20°C)_vs_Unspiked-pig-feces(P2)-at-0-hour_UP NA 838 33024 -bsdb:1048/112/2_Microbiome:Unspiked-pig-feces(P2)-at-64-hours-(-20°C)_vs_Unspiked-pig-feces(P2)-at-0-hour_DOWN NA 157 216851 841 -bsdb:1048/113/1_Microbiome:Unspiked-pig-feces(P2)-at-16-hours-(5°C)_vs_Unspiked-pig-feces(P2)-at-0-hour_UP NA 216851 33024 841 -bsdb:1048/113/2_Microbiome:Unspiked-pig-feces(P2)-at-16-hours-(5°C)_vs_Unspiked-pig-feces(P2)-at-0-hour_DOWN NA 838 157 -bsdb:1048/114/1_Microbiome:Unspiked-pig-feces(P2)-at-64-hours-(5°C)_vs_Unspiked-pig-feces(P2)-at-0-hour_UP NA 216851 33024 841 -bsdb:1048/114/2_Microbiome:Unspiked-pig-feces(P2)-at-64-hours-(5°C)_vs_Unspiked-pig-feces(P2)-at-0-hour_DOWN NA 838 157 -bsdb:1048/115/1_Microbiome:Unspiked-pig-feces(P2)-at-16-hours-(22°C)_vs_Unspiked-pig-feces(P2)-at-0-hour_UP NA 216851 33024 841 -bsdb:1048/115/2_Microbiome:Unspiked-pig-feces(P2)-at-16-hours-(22°C)_vs_Unspiked-pig-feces(P2)-at-0-hour_DOWN NA 838 157 -bsdb:1048/116/1_Microbiome:Unspiked-pig-feces(P2)-at-64-hours-(22°C)_vs_Unspiked-pig-feces(P2)-at-0-hour_UP NA 216851 33024 841 -bsdb:1048/116/2_Microbiome:Unspiked-pig-feces(P2)-at-64-hours-(22°C)_vs_Unspiked-pig-feces(P2)-at-0-hour_DOWN NA 838 157 -bsdb:1048/117/1_Microbiome:Unspiked-pig-feces(P2)-at-64-hours-(80°C)_vs_Unspiked-pig-feces(P2)-at-16-hours-(-80°C)_UP NA 216851 -bsdb:1048/117/2_Microbiome:Unspiked-pig-feces(P2)-at-64-hours-(80°C)_vs_Unspiked-pig-feces(P2)-at-16-hours-(-80°C)_DOWN NA 838 157 33024 841 -bsdb:1048/118/1_Microbiome:Unspiked-pig-feces(P2)-at-16-hours-(-20°C)_vs_Unspiked-pig-feces(P2)-at-16-hours-(-80°C)_UP NA 838 33024 -bsdb:1048/118/2_Microbiome:Unspiked-pig-feces(P2)-at-16-hours-(-20°C)_vs_Unspiked-pig-feces(P2)-at-16-hours-(-80°C)_DOWN NA 157 216851 841 -bsdb:1048/119/1_Microbiome:Unspiked-pig-feces(P2)-at-64-hours-(-20°C)_vs_Unspiked-pig-feces(P2)-at-16-hours-(-80°C)_UP NA 838 33024 -bsdb:1048/119/2_Microbiome:Unspiked-pig-feces(P2)-at-64-hours-(-20°C)_vs_Unspiked-pig-feces(P2)-at-16-hours-(-80°C)_DOWN NA 157 216851 841 -bsdb:1048/120/1_Microbiome:Unspiked-pig-feces(P2)-at-16-hours-(5°C)_vs_Unspiked-pig-feces(P2)-at-16-hours-(-80°C)_UP NA 157 216851 33024 841 -bsdb:1048/120/2_Microbiome:Unspiked-pig-feces(P2)-at-16-hours-(5°C)_vs_Unspiked-pig-feces(P2)-at-16-hours-(-80°C)_DOWN NA 838 -bsdb:1048/121/1_Microbiome:Unspiked-pig-feces(P2)-at-64-hours-(5°C)_vs_Unspiked-pig-feces(P2)-at-16-hours-(-80°C)_UP NA 157 216851 33024 841 -bsdb:1048/121/2_Microbiome:Unspiked-pig-feces(P2)-at-64-hours-(5°C)_vs_Unspiked-pig-feces(P2)-at-16-hours-(-80°C)_DOWN NA 838 -bsdb:1048/122/1_Microbiome:Unspiked-pig-feces(P2)-at-16-hours-(22°C)_vs_Unspiked-pig-feces(P2)-at-16-hours-(-80°C)_UP NA 157 216851 33024 841 -bsdb:1048/122/2_Microbiome:Unspiked-pig-feces(P2)-at-16-hours-(22°C)_vs_Unspiked-pig-feces(P2)-at-16-hours-(-80°C)_DOWN NA 838 -bsdb:1048/123/1_Microbiome:Unspiked-pig-feces(P2)-at-64-hours-(22°C)_vs_Unspiked-pig-feces(P2)-at-16-hours-(-80°C)_UP NA 157 216851 33024 841 -bsdb:1048/123/2_Microbiome:Unspiked-pig-feces(P2)-at-64-hours-(22°C)_vs_Unspiked-pig-feces(P2)-at-16-hours-(-80°C)_DOWN NA 838 -bsdb:1048/124/1_Microbiome:Unspiked-pig-feces(P2)-at-16-hours-(-20°C)_vs_Unspiked-pig-feces(P2)-at-64-hours-(-80°C)_UP NA 838 157 33024 841 -bsdb:1048/124/2_Microbiome:Unspiked-pig-feces(P2)-at-16-hours-(-20°C)_vs_Unspiked-pig-feces(P2)-at-64-hours-(-80°C)_DOWN NA 216851 -bsdb:1048/125/1_Microbiome:Unspiked-pig-feces(P2)-at-64-hours-(-20°C)_vs_Unspiked-pig-feces(P2)-at-64-hours-(-80°C)_UP NA 838 157 33024 -bsdb:1048/125/2_Microbiome:Unspiked-pig-feces(P2)-at-64-hours-(-20°C)_vs_Unspiked-pig-feces(P2)-at-64-hours-(-80°C)_DOWN NA 216851 841 -bsdb:1048/126/1_Microbiome:Unspiked-pig-feces(P2)-at-16-hours-(5°C)_vs_Unspiked-pig-feces(P2)-at-64-hours-(-80°C)_UP NA 157 216851 33024 841 -bsdb:1048/126/2_Microbiome:Unspiked-pig-feces(P2)-at-16-hours-(5°C)_vs_Unspiked-pig-feces(P2)-at-64-hours-(-80°C)_DOWN NA 838 -bsdb:1048/127/1_Microbiome:Unspiked-pig-feces(P2)-at-64-hours-(5°C)_vs_Unspiked-pig-feces(P2)-at-64-hours-(-80°C)_UP NA 216851 33024 841 157 -bsdb:1048/127/2_Microbiome:Unspiked-pig-feces(P2)-at-64-hours-(5°C)_vs_Unspiked-pig-feces(P2)-at-64-hours-(-80°C)_DOWN NA 838 -bsdb:1048/128/1_Microbiome:Unspiked-pig-feces(P2)-at-16-hours-(22°C)_vs_Unspiked-pig-feces(P2)-at-64-hours-(-80°C)_UP NA 157 216851 33024 841 -bsdb:1048/128/2_Microbiome:Unspiked-pig-feces(P2)-at-16-hours-(22°C)_vs_Unspiked-pig-feces(P2)-at-64-hours-(-80°C)_DOWN NA 838 -bsdb:1048/129/1_Microbiome:Unspiked-pig-feces(P2)-at-64-hours-(22°C)_vs_Unspiked-pig-feces(P2)-at-64-hours-(-80°C)_UP NA 216851 33024 157 841 -bsdb:1048/129/2_Microbiome:Unspiked-pig-feces(P2)-at-64-hours-(22°C)_vs_Unspiked-pig-feces(P2)-at-64-hours-(-80°C)_DOWN NA 838 -bsdb:1048/130/1_Microbiome:Unspiked-pig-feces(P2)-at-64-hours-(-20°C)_vs_Unspiked-pig-feces(P2)-at-16-hours-(-20°C)_UP NA 33024 -bsdb:1048/130/2_Microbiome:Unspiked-pig-feces(P2)-at-64-hours-(-20°C)_vs_Unspiked-pig-feces(P2)-at-16-hours-(-20°C)_DOWN NA 838 157 216851 841 -bsdb:1048/131/1_Microbiome:Unspiked-pig-feces(P2)-at-16-hours-(5°C)_vs_Unspiked-pig-feces(P2)-at-16-hours-(-20°C)_UP NA 157 216851 33024 841 -bsdb:1048/131/2_Microbiome:Unspiked-pig-feces(P2)-at-16-hours-(5°C)_vs_Unspiked-pig-feces(P2)-at-16-hours-(-20°C)_DOWN NA 838 -bsdb:1048/132/1_Microbiome:Unspiked-pig-feces(P2)-at-64-hours-(5°C)_vs_Unspiked-pig-feces(P2)-at-16-hours-(-20°C)_UP NA 157 216851 33024 841 -bsdb:1048/132/2_Microbiome:Unspiked-pig-feces(P2)-at-64-hours-(5°C)_vs_Unspiked-pig-feces(P2)-at-16-hours-(-20°C)_DOWN NA 838 -bsdb:1048/133/1_Microbiome:Unspiked-pig-feces(P2)-at-16-hours-(22°C)_vs_Unspiked-pig-feces(P2)-at-16-hours-(-20°C)_UP NA 157 216851 33024 841 -bsdb:1048/133/2_Microbiome:Unspiked-pig-feces(P2)-at-16-hours-(22°C)_vs_Unspiked-pig-feces(P2)-at-16-hours-(-20°C)_DOWN NA 838 -bsdb:1048/134/1_Microbiome:Unspiked-pig-feces(P2)-at-64-hours-(22°C)_vs_Unspiked-pig-feces(P2)-at-16-hours-(-20°C)_UP NA 157 216851 33024 841 -bsdb:1048/134/2_Microbiome:Unspiked-pig-feces(P2)-at-64-hours-(22°C)_vs_Unspiked-pig-feces(P2)-at-16-hours-(-20°C)_DOWN NA 838 -bsdb:1048/135/1_Microbiome:Unspiked-pig-feces(P2)-at-16-hours-(5°C)_vs_Unspiked-pig-feces(P2)-at-64-hours-(-20°C)_UP NA 157 216851 841 -bsdb:1048/135/2_Microbiome:Unspiked-pig-feces(P2)-at-16-hours-(5°C)_vs_Unspiked-pig-feces(P2)-at-64-hours-(-20°C)_DOWN NA 838 33024 -bsdb:1048/136/1_Microbiome:Unspiked-pig-feces(P2)-at-64-hours-(5°C)_vs_Unspiked-pig-feces(P2)-at-64-hours-(-20°C)_UP NA 157 216851 33024 841 -bsdb:1048/136/2_Microbiome:Unspiked-pig-feces(P2)-at-64-hours-(5°C)_vs_Unspiked-pig-feces(P2)-at-64-hours-(-20°C)_DOWN NA 838 -bsdb:1048/137/1_Microbiome:Unspiked-pig-feces(P2)-at-16-hours-(22°C)_vs_Unspiked-pig-feces(P2)-at-64-hours-(-20°C)_UP NA 216851 157 841 33024 -bsdb:1048/137/2_Microbiome:Unspiked-pig-feces(P2)-at-16-hours-(22°C)_vs_Unspiked-pig-feces(P2)-at-64-hours-(-20°C)_DOWN NA 838 -bsdb:1048/138/1_Microbiome:Unspiked-pig-feces(P2)-at-64-hours-(22°C)_vs_Unspiked-pig-feces(P2)-at-64-hours-(-20°C)_UP NA 157 216851 33024 841 -bsdb:1048/138/2_Microbiome:Unspiked-pig-feces(P2)-at-64-hours-(22°C)_vs_Unspiked-pig-feces(P2)-at-64-hours-(-20°C)_DOWN NA 838 -bsdb:1048/139/1_Microbiome:Unspiked-pig-feces(P2)-at-64-hours-(5°C)_vs_Unspiked-pig-feces(P2)-at-16-hours-(5°C)_UP NA 216851 33024 841 -bsdb:1048/139/2_Microbiome:Unspiked-pig-feces(P2)-at-64-hours-(5°C)_vs_Unspiked-pig-feces(P2)-at-16-hours-(5°C)_DOWN NA 838 157 -bsdb:1048/140/1_Microbiome:Unspiked-pig-feces(P2)-at-16-hours-(22°C)_vs_Unspiked-pig-feces(P2)-at-16-hours-(5°C)_UP NA 216851 33024 841 -bsdb:1048/140/2_Microbiome:Unspiked-pig-feces(P2)-at-16-hours-(22°C)_vs_Unspiked-pig-feces(P2)-at-16-hours-(5°C)_DOWN NA 838 157 -bsdb:1048/141/1_Microbiome:Unspiked-pig-feces(P2)-at-64-hours-(22°C)_vs_Unspiked-pig-feces(P2)-at-16-hours-(5°C)_UP NA 216851 33024 841 -bsdb:1048/141/2_Microbiome:Unspiked-pig-feces(P2)-at-64-hours-(22°C)_vs_Unspiked-pig-feces(P2)-at-16-hours-(5°C)_DOWN NA 838 157 -bsdb:1048/142/1_Microbiome:Unspiked-pig-feces(P2)-at-16-hours-(22°C)_vs_Unspiked-pig-feces(P2)-at-64-hours-(5°C)_UP NA 838 157 -bsdb:1048/142/2_Microbiome:Unspiked-pig-feces(P2)-at-16-hours-(22°C)_vs_Unspiked-pig-feces(P2)-at-64-hours-(5°C)_DOWN NA 216851 33024 841 -bsdb:1048/143/1_Microbiome:Unspiked-pig-feces(P2)-at-64-hours-(22°C)_vs_Unspiked-pig-feces(P2)-at-64-hours-(5°C)_UP NA 157 33024 -bsdb:1048/143/2_Microbiome:Unspiked-pig-feces(P2)-at-64-hours-(22°C)_vs_Unspiked-pig-feces(P2)-at-64-hours-(5°C)_DOWN NA 838 216851 841 -bsdb:1048/144/1_Microbiome:Unspiked-pig-feces(P2)-at-64-hours-(22°C)_vs_Unspiked-pig-feces(P2)-at-16-hours-(22°C)_UP NA 157 33024 841 -bsdb:1048/144/2_Microbiome:Unspiked-pig-feces(P2)-at-64-hours-(22°C)_vs_Unspiked-pig-feces(P2)-at-16-hours-(22°C)_DOWN NA 216851 838 -bsdb:1048/145/1_Microbiome:Unspiked-sewage-samples-(S1)-at-16-hours-(-80°C)_vs_Unspiked-sewage-samples-(S1)-at-0-hours_UP NA 28196 838 642 -bsdb:1048/145/2_Microbiome:Unspiked-sewage-samples-(S1)-at-16-hours-(-80°C)_vs_Unspiked-sewage-samples-(S1)-at-0-hours_DOWN NA 469 375288 -bsdb:1048/146/1_Microbiome:Unspiked-sewage-samples-(S1)-at-64-hours-(-80°C)_vs_Unspiked-sewage-samples-(S1)-at-0-hours_UP NA 28196 642 -bsdb:1048/146/2_Microbiome:Unspiked-sewage-samples-(S1)-at-64-hours-(-80°C)_vs_Unspiked-sewage-samples-(S1)-at-0-hours_DOWN NA 469 375288 838 -bsdb:1048/147/1_Microbiome:Unspiked-sewage-samples-(S1)-at-16-hours-(-20°C)_vs_Unspiked-sewage-samples-(S1)-at-0-hours_UP NA 28196 642 -bsdb:1048/147/2_Microbiome:Unspiked-sewage-samples-(S1)-at-16-hours-(-20°C)_vs_Unspiked-sewage-samples-(S1)-at-0-hours_DOWN NA 469 375288 838 -bsdb:1048/148/1_Microbiome:Unspiked-sewage-samples-(S1)-at-64-hours-(-20°C)_vs_Unspiked-sewage-samples-(S1)-at-0-hours_UP NA 28196 642 838 -bsdb:1048/148/2_Microbiome:Unspiked-sewage-samples-(S1)-at-64-hours-(-20°C)_vs_Unspiked-sewage-samples-(S1)-at-0-hours_DOWN NA 375288 469 -bsdb:1048/149/1_Microbiome:Unspiked-sewage-samples-(S1)-at-16-hours-(5°C)_vs_Unspiked-sewage-samples-(S1)-at-0-hours_UP NA 28196 838 642 -bsdb:1048/149/2_Microbiome:Unspiked-sewage-samples-(S1)-at-16-hours-(5°C)_vs_Unspiked-sewage-samples-(S1)-at-0-hours_DOWN NA 469 375288 -bsdb:1048/150/1_Microbiome:Unspiked-sewage-samples-(S1)-at-64-hours-(5°C)_vs_Unspiked-sewage-samples-(S1)-at-0-hours_UP NA 375288 838 642 -bsdb:1048/150/2_Microbiome:Unspiked-sewage-samples-(S1)-at-64-hours-(5°C)_vs_Unspiked-sewage-samples-(S1)-at-0-hours_DOWN NA 28196 469 -bsdb:1048/151/1_Microbiome:Unspiked-sewage-samples-(S1)-at-16-hours-(22°C)_vs_Unspiked-sewage-samples-(S1)-at-0-hours_UP NA 375288 838 642 -bsdb:1048/151/2_Microbiome:Unspiked-sewage-samples-(S1)-at-16-hours-(22°C)_vs_Unspiked-sewage-samples-(S1)-at-0-hours_DOWN NA 28196 469 -bsdb:1048/152/1_Microbiome:Unspiked-sewage-samples-(S1)-at-64-hours-(22°C)_vs_Unspiked-sewage-samples-(S1)-at-0-hours_UP NA 838 642 -bsdb:1048/152/2_Microbiome:Unspiked-sewage-samples-(S1)-at-64-hours-(22°C)_vs_Unspiked-sewage-samples-(S1)-at-0-hours_DOWN NA 28196 469 375288 -bsdb:1048/153/1_Microbiome:Unspiked-sewage-samples-(S1)-at-64-hours-(-80°C)_vs_Unspiked-sewage-samples-(S1)-at-16-hours-(-80°C)_UP NA 642 -bsdb:1048/153/2_Microbiome:Unspiked-sewage-samples-(S1)-at-64-hours-(-80°C)_vs_Unspiked-sewage-samples-(S1)-at-16-hours-(-80°C)_DOWN NA 28196 469 375288 838 -bsdb:1048/154/1_Microbiome:Unspiked-sewage-samples-(S1)-at-16-hours-(-20°C)_vs_Unspiked-sewage-samples-(S1)-at-16-hours-(-80°C)_UP NA 469 -bsdb:1048/154/2_Microbiome:Unspiked-sewage-samples-(S1)-at-16-hours-(-20°C)_vs_Unspiked-sewage-samples-(S1)-at-16-hours-(-80°C)_DOWN NA 28196 375288 838 642 -bsdb:1048/155/1_Microbiome:Unspiked-sewage-samples-(S1)-at-64-hours-(-20°C)_vs_Unspiked-sewage-samples-(S1)-at-16-hours-(-80°C)_UP NA 838 -bsdb:1048/155/2_Microbiome:Unspiked-sewage-samples-(S1)-at-64-hours-(-20°C)_vs_Unspiked-sewage-samples-(S1)-at-16-hours-(-80°C)_DOWN NA 28196 469 375288 642 -bsdb:1048/156/1_Microbiome:Unspiked-sewage-samples-(S1)-at-16-hours-(5°C)_vs_Unspiked-sewage-samples-(S1)-at-16-hours-(-80°C)_UP NA 375288 838 -bsdb:1048/156/2_Microbiome:Unspiked-sewage-samples-(S1)-at-16-hours-(5°C)_vs_Unspiked-sewage-samples-(S1)-at-16-hours-(-80°C)_DOWN NA 28196 469 642 -bsdb:1048/157/1_Microbiome:Unspiked-sewage-samples-(S1)-at-64-hours-(5°C)_vs_Unspiked-sewage-samples-(S1)-at-16-hours-(-80°C)_UP NA 375288 -bsdb:1048/157/2_Microbiome:Unspiked-sewage-samples-(S1)-at-64-hours-(5°C)_vs_Unspiked-sewage-samples-(S1)-at-16-hours-(-80°C)_DOWN NA 28196 469 838 642 -bsdb:1048/158/1_Microbiome:Unspiked-sewage-samples-(S1)-at-16-hours-(22°C)_vs_Unspiked-sewage-samples-(S1)-at-16-hours-(-80°C)_UP NA 469 375288 838 -bsdb:1048/158/2_Microbiome:Unspiked-sewage-samples-(S1)-at-16-hours-(22°C)_vs_Unspiked-sewage-samples-(S1)-at-16-hours-(-80°C)_DOWN NA 28196 642 -bsdb:1048/159/1_Microbiome:Unspiked-sewage-samples-(S1)-at-64-hours-(22°C)_vs_Unspiked-sewage-samples-(S1)-at-16-hours-(-80°C)_UP NA 838 642 -bsdb:1048/159/2_Microbiome:Unspiked-sewage-samples-(S1)-at-64-hours-(22°C)_vs_Unspiked-sewage-samples-(S1)-at-16-hours-(-80°C)_DOWN NA 28196 469 375288 -bsdb:1048/160/1_Microbiome:Unspiked-sewage-samples-(S1)-at-16-hours-(-20°C)_vs_Unspiked-sewage-samples-(S1)-at-64-hours-(-80°C)_UP NA 28196 469 375288 642 -bsdb:1048/160/2_Microbiome:Unspiked-sewage-samples-(S1)-at-16-hours-(-20°C)_vs_Unspiked-sewage-samples-(S1)-at-64-hours-(-80°C)_DOWN NA 838 -bsdb:1048/161/1_Microbiome:Unspiked-sewage-samples-(S1)-at-64-hours-(-20°C)_vs_Unspiked-sewage-samples-(S1)-at-64-hours-(-80°C)_UP NA 28196 469 375288 838 -bsdb:1048/161/2_Microbiome:Unspiked-sewage-samples-(S1)-at-64-hours-(-20°C)_vs_Unspiked-sewage-samples-(S1)-at-64-hours-(-80°C)_DOWN NA 642 -bsdb:1048/162/1_Microbiome:Unspiked-sewage-samples-(S1)-at-16-hours-(5°C)_vs_Unspiked-sewage-samples-(S1)-at-64-hours-(-80°C)_UP NA 28196 469 375288 838 -bsdb:1048/162/2_Microbiome:Unspiked-sewage-samples-(S1)-at-16-hours-(5°C)_vs_Unspiked-sewage-samples-(S1)-at-64-hours-(-80°C)_DOWN NA 642 -bsdb:1048/207/1_Microbiome:Unspiked-sewage-samples-(S2)-at-16-hours-(5°C)_vs_Unspiked-sewage-samples-(S2)-at-64-hours-(-20°C)_UP NA 375288 -bsdb:1048/207/2_Microbiome:Unspiked-sewage-samples-(S2)-at-16-hours-(5°C)_vs_Unspiked-sewage-samples-(S2)-at-64-hours-(-20°C)_DOWN NA 28196 469 838 642 bsdb:1049/1/1_Atopic-eczema:cADtreat-dogs_vs_Healthy-dogs_UP NA 201174 976 bsdb:1049/1/2_Atopic-eczema:cADtreat-dogs_vs_Healthy-dogs_DOWN NA 1663 1716 1224 bsdb:1049/2/1_Atopic-eczema:cADpost-dogs_vs_cADpre-dogs_DOWN NA 1663 1386 1298 286 204447 1224 976 1297 @@ -4816,28 +4660,6 @@ bsdb:1049/43/1_Atopic-eczema:cADpre-dogs_vs_Healthy-dogs_UP NA 283734 1279 bsdb:1049/44/1_Atopic-eczema:cADtreat-dogs_vs_Healthy-dogs_DOWN NA 246432 475 bsdb:1049/44/2_Atopic-eczema:cADtreat-dogs_vs_Healthy-dogs_UP NA 1282 1290 47670 bsdb:1049/45/1_Atopic-eczema:cADpost-dogs_vs_cADpre-dogs_UP NA 1290 -bsdb:1049/46/1_Atopic-eczema:cADtreat-dogs_vs_Healthy-dogs_UP NA 1224 -bsdb:1049/47/1_Atopic-eczema:cADpre-dogs_vs_Healthy-dogs_UP NA 1279 -bsdb:1049/48/1_Atopic-eczema:cADpost-dogs_vs_cADpre-dogs_DOWN NA 1279 -bsdb:1049/49/1_Atopic-eczema:cADpre-dogs_vs_Healthy-dogs_UP NA 1279 -bsdb:1049/50/1_Atopic-eczema:cADpre-dogs_vs_Healthy-dogs_UP NA 1279 -bsdb:1049/51/1_Atopic-eczema:cADpost-dogs_vs_cADpre-dogs_DOWN NA 1279 -bsdb:1049/52/1_Atopic-eczema:cADtreat-dogs_vs_cADpre-dogs_DOWN NA 1279 -bsdb:1049/53/1_Atopic-eczema:cADpre-dogs_vs_Healthy-dogs_UP NA 1279 -bsdb:1049/54/1_Atopic-eczema:cADpre-dogs_vs_Healthy-dogs_UP NA 1279 -bsdb:1049/55/1_Atopic-eczema:cADpost-dogs_vs_cADpre-dogs_DOWN NA 1279 -bsdb:1049/56/1_Atopic-eczema:cADtreat-dogs_vs_cADpre-dogs_DOWN NA 1279 -bsdb:1049/57/1_Atopic-eczema:cADpre-dogs_vs_Healthy-dogs_UP NA 1279 -bsdb:1049/58/1_Atopic-eczema:cADpost-dogs_vs_cADpre-dogs_DOWN NA 1279 -bsdb:1049/59/1_Atopic-eczema:Mitochondrial-haplogroups-C_vs_Mitochondrial-haplogroups-A_DOWN NA 201174 29547 207244 1239 1301 2039240 572511 2749267 -bsdb:1049/60/1_Atopic-eczema:Mitochondrial-haplogroups-C_vs_Mitochondrial-haplogroups-A_DOWN NA 201174 1663 816 -bsdb:1049/61/1_Atopic-eczema:Mitochondrial-haplogroups-C_vs_Mitochondrial-haplogroups-A_UP NA 976 -bsdb:1049/61/2_Atopic-eczema:Mitochondrial-haplogroups-C_vs_Mitochondrial-haplogroups-A_DOWN NA 295418 724 -bsdb:1049/62/1_Atopic-eczema:Mitochondrial-haplogroups-C_vs_Mitochondrial-haplogroups-A_UP NA 32207 195950 40323 -bsdb:1049/62/2_Atopic-eczema:Mitochondrial-haplogroups-C_vs_Mitochondrial-haplogroups-A_DOWN NA 201174 237 745 -bsdb:1049/63/1_Atopic-eczema:Mitochondrial-haplogroups-C_vs_Mitochondrial-haplogroups-A_DOWN NA 841 -bsdb:1049/64/1_Atopic-eczema:Mitochondrial-haplogroups-C_vs_Mitochondrial-haplogroups-A_UP NA 724 -bsdb:1049/64/2_Atopic-eczema:Mitochondrial-haplogroups-C_vs_Mitochondrial-haplogroups-A_DOWN NA 816 1016 482 bsdb:1050/1/1_Taxonomic-microbiome-measurement:Esophagus_vs_Oral-cavity_UP NA 433 469 713 174708 28211 186817 1385 91061 1239 572511 374 118882 76892 204458 563835 59732 33042 212791 91347 543 1236 539738 356 85021 186826 32033 135614 119045 407 41294 165696 528 119852 216572 75682 712 135625 20 1743 135621 72274 286 48736 41295 204441 1007 1936988 504481 165695 41297 204457 13687 90964 1279 40323 1300 1301 2005473 bsdb:1050/1/2_Taxonomic-microbiome-measurement:Esophagus_vs_Oral-cavity_DOWN NA 1654 2049 2037 201174 171549 200643 976 28216 868 135615 2717 482 481 206351 346096 970 95818 bsdb:1050/2/1_Taxonomic-microbiome-measurement:Supragingival-plaque_vs_Saliva-and-tongue-dorsum_UP NA 976 3031852 117743 32066 203490 203692 203691 diff --git a/bugsigdb_signatures_mixed_taxname.gmt b/bugsigdb_signatures_mixed_taxname.gmt index 8eac58267..da142003e 100644 --- a/bugsigdb_signatures_mixed_taxname.gmt +++ b/bugsigdb_signatures_mixed_taxname.gmt @@ -1,4 +1,4 @@ -# BugSigDB 2025-01-25_15:58_UTC, License: Creative Commons Attribution 4.0 International, URL: https://bugsigdb.org +# BugSigDB 2025-01-26_10:58_UTC, License: Creative Commons Attribution 4.0 International, URL: https://bugsigdb.org bsdb:1/1/1_Colorectal-adenoma:conventional-adenoma-cases_vs_controls_UP NA Bacilli Gammaproteobacteria Actinomyces Corynebacterium Streptococcus Peptoniphilus Dorea Phascolarctobacterium Sutterella Actinomycetales Actinomycetaceae Alcaligenaceae Lactobacillales Streptococcaceae Veillonellaceae Enterobacterales Corynebacteriaceae Lacticaseibacillus zeae Bacillus Bacillaceae bsdb:1/1/2_Colorectal-adenoma:conventional-adenoma-cases_vs_controls_DOWN NA Coprobacillus Cyanobacteriota bsdb:1/2/1_Hyperplastic-Polyp:hyperplastic-polyp-cases_vs_controls_UP NA Anaerostipes Lacticaseibacillus zeae @@ -4592,162 +4592,6 @@ bsdb:1048/44/1_Microbiome:Unspiked-pig-feces(P1)-at-16-hours-(5°C)_vs_Unspiked- bsdb:1048/44/2_Microbiome:Unspiked-pig-feces(P1)-at-16-hours-(5°C)_vs_Unspiked-pig-feces(P1)-at-16-hours-(-80°C)_DOWN NA Prevotella Phascolarctobacterium bsdb:1048/45/1_Microbiome:Unspiked-pig-feces(P1)-at-64-hours-(5°C)_vs_Unspiked-pig-feces(P1)-at-16-hours-(-80°C)_UP NA Treponema Faecalibacterium Phascolarctobacterium Roseburia bsdb:1048/45/2_Microbiome:Unspiked-pig-feces(P1)-at-64-hours-(5°C)_vs_Unspiked-pig-feces(P1)-at-16-hours-(-80°C)_DOWN NA Prevotella -bsdb:1048/46/1_Microbiome:Unspiked-pig-feces(P1)-at-16-hours-(22°C)_vs_Unspiked-pig-feces(P1)-at-16-hours-(-80°C)_UP NA Treponema Faecalibacterium Roseburia -bsdb:1048/46/2_Microbiome:Unspiked-pig-feces(P1)-at-16-hours-(22°C)_vs_Unspiked-pig-feces(P1)-at-16-hours-(-80°C)_DOWN NA Prevotella Phascolarctobacterium -bsdb:1048/47/1_Microbiome:Unspiked-pig-feces(P1)-at-64-hours-(22°C)_vs_Unspiked-pig-feces(P1)-at-16-hours-(-80°C)_UP NA Treponema Faecalibacterium -bsdb:1048/47/2_Microbiome:Unspiked-pig-feces(P1)-at-64-hours-(22°C)_vs_Unspiked-pig-feces(P1)-at-16-hours-(-80°C)_DOWN NA Prevotella -bsdb:1048/48/1_Microbiome:Unspiked-pig-feces(P1)-at-16-hours-(-20°C)_vs_Unspiked-pig-feces(P1)-at-64-hours-(-80°C)_UP NA Faecalibacterium Roseburia -bsdb:1048/48/2_Microbiome:Unspiked-pig-feces(P1)-at-16-hours-(-20°C)_vs_Unspiked-pig-feces(P1)-at-64-hours-(-80°C)_DOWN NA Prevotella Treponema Phascolarctobacterium -bsdb:1048/49/1_Microbiome:Unspiked-pig-feces(P1)-at-64-hours-(-20°C)_vs_Unspiked-pig-feces(P1)-at-64-hours-(-80°C)_UP NA Treponema Faecalibacterium Roseburia -bsdb:1048/49/2_Microbiome:Unspiked-pig-feces(P1)-at-64-hours-(-20°C)_vs_Unspiked-pig-feces(P1)-at-64-hours-(-80°C)_DOWN NA Prevotella Phascolarctobacterium -bsdb:1048/50/1_Microbiome:Unspiked-pig-feces(P1)-at-16-hours-(5°C)_vs_Unspiked-pig-feces(P1)-at-64-hours-(-80°C)_UP NA Treponema Faecalibacterium Roseburia -bsdb:1048/50/2_Microbiome:Unspiked-pig-feces(P1)-at-16-hours-(5°C)_vs_Unspiked-pig-feces(P1)-at-64-hours-(-80°C)_DOWN NA Prevotella Phascolarctobacterium -bsdb:1048/51/1_Microbiome:Unspiked-pig-feces(P1)-at-64-hours-(5°C)_vs_Unspiked-pig-feces(P1)-at-64-hours-(-80°C)_UP NA Faecalibacterium Roseburia -bsdb:1048/51/2_Microbiome:Unspiked-pig-feces(P1)-at-64-hours-(5°C)_vs_Unspiked-pig-feces(P1)-at-64-hours-(-80°C)_DOWN NA Prevotella Treponema Phascolarctobacterium -bsdb:1048/52/1_Microbiome:Unspiked-pig-feces(P1)-at-16-hours-(22°C)_vs_Unspiked-pig-feces(P1)-at-64-hours-(-80°C)_UP NA Treponema Faecalibacterium Phascolarctobacterium Roseburia -bsdb:1048/52/2_Microbiome:Unspiked-pig-feces(P1)-at-16-hours-(22°C)_vs_Unspiked-pig-feces(P1)-at-64-hours-(-80°C)_DOWN NA Prevotella -bsdb:1048/53/1_Microbiome:Unspiked-pig-feces(P1)-at-64-hours-(22°C)_vs_Unspiked-pig-feces(P1)-at-64-hours-(-80°C)_UP NA Treponema Faecalibacterium Phascolarctobacterium Roseburia -bsdb:1048/53/2_Microbiome:Unspiked-pig-feces(P1)-at-64-hours-(22°C)_vs_Unspiked-pig-feces(P1)-at-64-hours-(-80°C)_DOWN NA Prevotella -bsdb:1048/54/1_Microbiome:Unspiked-pig-feces(P1)-at-64-hours-(-20°C)_vs_Unspiked-pig-feces(P1)-at-16-hours-(-20°C)_UP NA Treponema -bsdb:1048/54/2_Microbiome:Unspiked-pig-feces(P1)-at-64-hours-(-20°C)_vs_Unspiked-pig-feces(P1)-at-16-hours-(-20°C)_DOWN NA Prevotella Phascolarctobacterium Faecalibacterium Roseburia -bsdb:1048/55/1_Microbiome:Unspiked-pig-feces(P1)-at-16-hours-(5°C)_vs_Unspiked-pig-feces(P1)-at-16-hours-(-20°C)_UP NA Treponema Faecalibacterium Roseburia -bsdb:1048/55/2_Microbiome:Unspiked-pig-feces(P1)-at-16-hours-(5°C)_vs_Unspiked-pig-feces(P1)-at-16-hours-(-20°C)_DOWN NA Prevotella Phascolarctobacterium -bsdb:1048/56/1_Microbiome:Unspiked-pig-feces(P1)-at-64-hours-(5°C)_vs_Unspiked-pig-feces(P1)-at-16-hours-(-20°C)_UP NA Treponema Faecalibacterium Phascolarctobacterium Roseburia -bsdb:1048/56/2_Microbiome:Unspiked-pig-feces(P1)-at-64-hours-(5°C)_vs_Unspiked-pig-feces(P1)-at-16-hours-(-20°C)_DOWN NA Prevotella -bsdb:1048/57/1_Microbiome:Unspiked-pig-feces(P1)-at-16-hours-(22°C)_vs_Unspiked-pig-feces(P1)-at-16-hours-(-20°C)_UP NA Treponema Faecalibacterium Phascolarctobacterium Roseburia -bsdb:1048/57/2_Microbiome:Unspiked-pig-feces(P1)-at-16-hours-(22°C)_vs_Unspiked-pig-feces(P1)-at-16-hours-(-20°C)_DOWN NA Prevotella -bsdb:1048/58/1_Microbiome:Unspiked-pig-feces(P1)-at-64-hours-(22°C)_vs_Unspiked-pig-feces(P1)-at-16-hours-(-20°C)_UP NA Treponema Faecalibacterium Phascolarctobacterium Roseburia -bsdb:1048/58/2_Microbiome:Unspiked-pig-feces(P1)-at-64-hours-(22°C)_vs_Unspiked-pig-feces(P1)-at-16-hours-(-20°C)_DOWN NA Prevotella -bsdb:1048/62/1_Microbiome:Unspiked-pig-feces(P1)-at-16-hours-(5°C)_vs_Unspiked-pig-feces(P1)-at-64-hours-(-20°C)_UP NA Treponema Faecalibacterium -bsdb:1048/62/2_Microbiome:Unspiked-pig-feces(P1)-at-16-hours-(5°C)_vs_Unspiked-pig-feces(P1)-at-64-hours-(-20°C)_DOWN NA Prevotella Phascolarctobacterium Roseburia -bsdb:1048/64/1_Microbiome:Unspiked-pig-feces(P1)-at-64-hours-(5°C)_vs_Unspiked-pig-feces(P1)-at-64-hours-(-20°C)_UP NA Faecalibacterium Phascolarctobacterium Roseburia -bsdb:1048/64/2_Microbiome:Unspiked-pig-feces(P1)-at-64-hours-(5°C)_vs_Unspiked-pig-feces(P1)-at-64-hours-(-20°C)_DOWN NA Prevotella Treponema -bsdb:1048/65/1_Microbiome:Unspiked-pig-feces(P1)-at-16-hours-(22°C)_vs_Unspiked-pig-feces(P1)-at-64-hours-(-20°C)_UP NA Treponema Faecalibacterium Phascolarctobacterium Roseburia -bsdb:1048/65/2_Microbiome:Unspiked-pig-feces(P1)-at-16-hours-(22°C)_vs_Unspiked-pig-feces(P1)-at-64-hours-(-20°C)_DOWN NA Prevotella -bsdb:1048/66/1_Microbiome:Unspiked-pig-feces(P1)-at-64-hours-(22°C)_vs_Unspiked-pig-feces(P1)-at-64-hours-(-20°C)_UP NA Treponema Phascolarctobacterium Faecalibacterium Roseburia -bsdb:1048/66/2_Microbiome:Unspiked-pig-feces(P1)-at-64-hours-(22°C)_vs_Unspiked-pig-feces(P1)-at-64-hours-(-20°C)_DOWN NA Prevotella -bsdb:1048/67/1_Microbiome:Unspiked-pig-feces(P1)-at-64-hours-(5°C)_vs_Unspiked-pig-feces(P1)-at-16-hours-(5°C)_UP NA Treponema Faecalibacterium Roseburia -bsdb:1048/67/2_Microbiome:Unspiked-pig-feces(P1)-at-64-hours-(5°C)_vs_Unspiked-pig-feces(P1)-at-16-hours-(5°C)_DOWN NA Prevotella Phascolarctobacterium -bsdb:1048/68/1_Microbiome:Unspiked-pig-feces(P1)-at-16-hours-(22°C)_vs_Unspiked-pig-feces(P1)-at-16-hours-(5°C)_UP NA Treponema Faecalibacterium Phascolarctobacterium Roseburia -bsdb:1048/68/2_Microbiome:Unspiked-pig-feces(P1)-at-16-hours-(22°C)_vs_Unspiked-pig-feces(P1)-at-16-hours-(5°C)_DOWN NA Prevotella -bsdb:1048/69/1_Microbiome:Unspiked-pig-feces(P1)-at-64-hours-(22°C)_vs_Unspiked-pig-feces(P1)-at-16-hours-(5°C)_UP NA Faecalibacterium Phascolarctobacterium Roseburia -bsdb:1048/69/2_Microbiome:Unspiked-pig-feces(P1)-at-64-hours-(22°C)_vs_Unspiked-pig-feces(P1)-at-16-hours-(5°C)_DOWN NA Prevotella Treponema -bsdb:1048/70/1_Microbiome:Unspiked-pig-feces(P1)-at-16-hours-(22°C)_vs_Unspiked-pig-feces(P1)-at-64-hours-(5°C)_UP NA Treponema Faecalibacterium -bsdb:1048/70/2_Microbiome:Unspiked-pig-feces(P1)-at-16-hours-(22°C)_vs_Unspiked-pig-feces(P1)-at-64-hours-(5°C)_DOWN NA Prevotella Phascolarctobacterium Roseburia -bsdb:1048/71/1_Microbiome:Unspiked-pig-feces(P1)-at-64-hours-(22°C)_vs_Unspiked-pig-feces(P1)-at-64-hours-(5°C)_UP NA Treponema Faecalibacterium -bsdb:1048/71/2_Microbiome:Unspiked-pig-feces(P1)-at-64-hours-(22°C)_vs_Unspiked-pig-feces(P1)-at-64-hours-(5°C)_DOWN NA Prevotella Phascolarctobacterium Roseburia -bsdb:1048/72/1_Microbiome:Unspiked-pig-feces(P1)-at-64-hours-(22°C)_vs_Unspiked-pig-feces(P1)-at-16-hours-(22°C)_UP NA Treponema Faecalibacterium -bsdb:1048/72/2_Microbiome:Unspiked-pig-feces(P1)-at-64-hours-(22°C)_vs_Unspiked-pig-feces(P1)-at-16-hours-(22°C)_DOWN NA Prevotella Phascolarctobacterium Roseburia -bsdb:1048/109/1_Microbiome:Unspiked-pig-feces(P2)-at-16-hours-(-80°C)_vs_Unspiked-pig-feces(P2)-at-0-hour_UP NA Phascolarctobacterium Prevotella Roseburia -bsdb:1048/109/2_Microbiome:Unspiked-pig-feces(P2)-at-16-hours-(-80°C)_vs_Unspiked-pig-feces(P2)-at-0-hour_DOWN NA Faecalibacterium Treponema -bsdb:1048/110/1_Microbiome:Unspiked-pig-feces(P2)-at-64-hours-(-80°C)_vs_Unspiked-pig-feces(P2)-at-0-hour_UP NA Prevotella -bsdb:1048/110/2_Microbiome:Unspiked-pig-feces(P2)-at-64-hours-(-80°C)_vs_Unspiked-pig-feces(P2)-at-0-hour_DOWN NA Faecalibacterium Phascolarctobacterium Roseburia Treponema -bsdb:1048/111/1_Microbiome:Unspiked-pig-feces(P2)-at-16-hours-(-20°C)_vs_Unspiked-pig-feces(P2)-at-0-hour_UP NA Prevotella Phascolarctobacterium Roseburia -bsdb:1048/111/2_Microbiome:Unspiked-pig-feces(P2)-at-16-hours-(-20°C)_vs_Unspiked-pig-feces(P2)-at-0-hour_DOWN NA Treponema Faecalibacterium -bsdb:1048/112/1_Microbiome:Unspiked-pig-feces(P2)-at-64-hours-(-20°C)_vs_Unspiked-pig-feces(P2)-at-0-hour_UP NA Prevotella Phascolarctobacterium -bsdb:1048/112/2_Microbiome:Unspiked-pig-feces(P2)-at-64-hours-(-20°C)_vs_Unspiked-pig-feces(P2)-at-0-hour_DOWN NA Treponema Faecalibacterium Roseburia -bsdb:1048/113/1_Microbiome:Unspiked-pig-feces(P2)-at-16-hours-(5°C)_vs_Unspiked-pig-feces(P2)-at-0-hour_UP NA Faecalibacterium Phascolarctobacterium Roseburia -bsdb:1048/113/2_Microbiome:Unspiked-pig-feces(P2)-at-16-hours-(5°C)_vs_Unspiked-pig-feces(P2)-at-0-hour_DOWN NA Prevotella Treponema -bsdb:1048/114/1_Microbiome:Unspiked-pig-feces(P2)-at-64-hours-(5°C)_vs_Unspiked-pig-feces(P2)-at-0-hour_UP NA Faecalibacterium Phascolarctobacterium Roseburia -bsdb:1048/114/2_Microbiome:Unspiked-pig-feces(P2)-at-64-hours-(5°C)_vs_Unspiked-pig-feces(P2)-at-0-hour_DOWN NA Prevotella Treponema -bsdb:1048/115/1_Microbiome:Unspiked-pig-feces(P2)-at-16-hours-(22°C)_vs_Unspiked-pig-feces(P2)-at-0-hour_UP NA Faecalibacterium Phascolarctobacterium Roseburia -bsdb:1048/115/2_Microbiome:Unspiked-pig-feces(P2)-at-16-hours-(22°C)_vs_Unspiked-pig-feces(P2)-at-0-hour_DOWN NA Prevotella Treponema -bsdb:1048/116/1_Microbiome:Unspiked-pig-feces(P2)-at-64-hours-(22°C)_vs_Unspiked-pig-feces(P2)-at-0-hour_UP NA Faecalibacterium Phascolarctobacterium Roseburia -bsdb:1048/116/2_Microbiome:Unspiked-pig-feces(P2)-at-64-hours-(22°C)_vs_Unspiked-pig-feces(P2)-at-0-hour_DOWN NA Prevotella Treponema -bsdb:1048/117/1_Microbiome:Unspiked-pig-feces(P2)-at-64-hours-(80°C)_vs_Unspiked-pig-feces(P2)-at-16-hours-(-80°C)_UP NA Faecalibacterium -bsdb:1048/117/2_Microbiome:Unspiked-pig-feces(P2)-at-64-hours-(80°C)_vs_Unspiked-pig-feces(P2)-at-16-hours-(-80°C)_DOWN NA Prevotella Treponema Phascolarctobacterium Roseburia -bsdb:1048/118/1_Microbiome:Unspiked-pig-feces(P2)-at-16-hours-(-20°C)_vs_Unspiked-pig-feces(P2)-at-16-hours-(-80°C)_UP NA Prevotella Phascolarctobacterium -bsdb:1048/118/2_Microbiome:Unspiked-pig-feces(P2)-at-16-hours-(-20°C)_vs_Unspiked-pig-feces(P2)-at-16-hours-(-80°C)_DOWN NA Treponema Faecalibacterium Roseburia -bsdb:1048/119/1_Microbiome:Unspiked-pig-feces(P2)-at-64-hours-(-20°C)_vs_Unspiked-pig-feces(P2)-at-16-hours-(-80°C)_UP NA Prevotella Phascolarctobacterium -bsdb:1048/119/2_Microbiome:Unspiked-pig-feces(P2)-at-64-hours-(-20°C)_vs_Unspiked-pig-feces(P2)-at-16-hours-(-80°C)_DOWN NA Treponema Faecalibacterium Roseburia -bsdb:1048/120/1_Microbiome:Unspiked-pig-feces(P2)-at-16-hours-(5°C)_vs_Unspiked-pig-feces(P2)-at-16-hours-(-80°C)_UP NA Treponema Faecalibacterium Phascolarctobacterium Roseburia -bsdb:1048/120/2_Microbiome:Unspiked-pig-feces(P2)-at-16-hours-(5°C)_vs_Unspiked-pig-feces(P2)-at-16-hours-(-80°C)_DOWN NA Prevotella -bsdb:1048/121/1_Microbiome:Unspiked-pig-feces(P2)-at-64-hours-(5°C)_vs_Unspiked-pig-feces(P2)-at-16-hours-(-80°C)_UP NA Treponema Faecalibacterium Phascolarctobacterium Roseburia -bsdb:1048/121/2_Microbiome:Unspiked-pig-feces(P2)-at-64-hours-(5°C)_vs_Unspiked-pig-feces(P2)-at-16-hours-(-80°C)_DOWN NA Prevotella -bsdb:1048/122/1_Microbiome:Unspiked-pig-feces(P2)-at-16-hours-(22°C)_vs_Unspiked-pig-feces(P2)-at-16-hours-(-80°C)_UP NA Treponema Faecalibacterium Phascolarctobacterium Roseburia -bsdb:1048/122/2_Microbiome:Unspiked-pig-feces(P2)-at-16-hours-(22°C)_vs_Unspiked-pig-feces(P2)-at-16-hours-(-80°C)_DOWN NA Prevotella -bsdb:1048/123/1_Microbiome:Unspiked-pig-feces(P2)-at-64-hours-(22°C)_vs_Unspiked-pig-feces(P2)-at-16-hours-(-80°C)_UP NA Treponema Faecalibacterium Phascolarctobacterium Roseburia -bsdb:1048/123/2_Microbiome:Unspiked-pig-feces(P2)-at-64-hours-(22°C)_vs_Unspiked-pig-feces(P2)-at-16-hours-(-80°C)_DOWN NA Prevotella -bsdb:1048/124/1_Microbiome:Unspiked-pig-feces(P2)-at-16-hours-(-20°C)_vs_Unspiked-pig-feces(P2)-at-64-hours-(-80°C)_UP NA Prevotella Treponema Phascolarctobacterium Roseburia -bsdb:1048/124/2_Microbiome:Unspiked-pig-feces(P2)-at-16-hours-(-20°C)_vs_Unspiked-pig-feces(P2)-at-64-hours-(-80°C)_DOWN NA Faecalibacterium -bsdb:1048/125/1_Microbiome:Unspiked-pig-feces(P2)-at-64-hours-(-20°C)_vs_Unspiked-pig-feces(P2)-at-64-hours-(-80°C)_UP NA Prevotella Treponema Phascolarctobacterium -bsdb:1048/125/2_Microbiome:Unspiked-pig-feces(P2)-at-64-hours-(-20°C)_vs_Unspiked-pig-feces(P2)-at-64-hours-(-80°C)_DOWN NA Faecalibacterium Roseburia -bsdb:1048/126/1_Microbiome:Unspiked-pig-feces(P2)-at-16-hours-(5°C)_vs_Unspiked-pig-feces(P2)-at-64-hours-(-80°C)_UP NA Treponema Faecalibacterium Phascolarctobacterium Roseburia -bsdb:1048/126/2_Microbiome:Unspiked-pig-feces(P2)-at-16-hours-(5°C)_vs_Unspiked-pig-feces(P2)-at-64-hours-(-80°C)_DOWN NA Prevotella -bsdb:1048/127/1_Microbiome:Unspiked-pig-feces(P2)-at-64-hours-(5°C)_vs_Unspiked-pig-feces(P2)-at-64-hours-(-80°C)_UP NA Faecalibacterium Phascolarctobacterium Roseburia Treponema -bsdb:1048/127/2_Microbiome:Unspiked-pig-feces(P2)-at-64-hours-(5°C)_vs_Unspiked-pig-feces(P2)-at-64-hours-(-80°C)_DOWN NA Prevotella -bsdb:1048/128/1_Microbiome:Unspiked-pig-feces(P2)-at-16-hours-(22°C)_vs_Unspiked-pig-feces(P2)-at-64-hours-(-80°C)_UP NA Treponema Faecalibacterium Phascolarctobacterium Roseburia -bsdb:1048/128/2_Microbiome:Unspiked-pig-feces(P2)-at-16-hours-(22°C)_vs_Unspiked-pig-feces(P2)-at-64-hours-(-80°C)_DOWN NA Prevotella -bsdb:1048/129/1_Microbiome:Unspiked-pig-feces(P2)-at-64-hours-(22°C)_vs_Unspiked-pig-feces(P2)-at-64-hours-(-80°C)_UP NA Faecalibacterium Phascolarctobacterium Treponema Roseburia -bsdb:1048/129/2_Microbiome:Unspiked-pig-feces(P2)-at-64-hours-(22°C)_vs_Unspiked-pig-feces(P2)-at-64-hours-(-80°C)_DOWN NA Prevotella -bsdb:1048/130/1_Microbiome:Unspiked-pig-feces(P2)-at-64-hours-(-20°C)_vs_Unspiked-pig-feces(P2)-at-16-hours-(-20°C)_UP NA Phascolarctobacterium -bsdb:1048/130/2_Microbiome:Unspiked-pig-feces(P2)-at-64-hours-(-20°C)_vs_Unspiked-pig-feces(P2)-at-16-hours-(-20°C)_DOWN NA Prevotella Treponema Faecalibacterium Roseburia -bsdb:1048/131/1_Microbiome:Unspiked-pig-feces(P2)-at-16-hours-(5°C)_vs_Unspiked-pig-feces(P2)-at-16-hours-(-20°C)_UP NA Treponema Faecalibacterium Phascolarctobacterium Roseburia -bsdb:1048/131/2_Microbiome:Unspiked-pig-feces(P2)-at-16-hours-(5°C)_vs_Unspiked-pig-feces(P2)-at-16-hours-(-20°C)_DOWN NA Prevotella -bsdb:1048/132/1_Microbiome:Unspiked-pig-feces(P2)-at-64-hours-(5°C)_vs_Unspiked-pig-feces(P2)-at-16-hours-(-20°C)_UP NA Treponema Faecalibacterium Phascolarctobacterium Roseburia -bsdb:1048/132/2_Microbiome:Unspiked-pig-feces(P2)-at-64-hours-(5°C)_vs_Unspiked-pig-feces(P2)-at-16-hours-(-20°C)_DOWN NA Prevotella -bsdb:1048/133/1_Microbiome:Unspiked-pig-feces(P2)-at-16-hours-(22°C)_vs_Unspiked-pig-feces(P2)-at-16-hours-(-20°C)_UP NA Treponema Faecalibacterium Phascolarctobacterium Roseburia -bsdb:1048/133/2_Microbiome:Unspiked-pig-feces(P2)-at-16-hours-(22°C)_vs_Unspiked-pig-feces(P2)-at-16-hours-(-20°C)_DOWN NA Prevotella -bsdb:1048/134/1_Microbiome:Unspiked-pig-feces(P2)-at-64-hours-(22°C)_vs_Unspiked-pig-feces(P2)-at-16-hours-(-20°C)_UP NA Treponema Faecalibacterium Phascolarctobacterium Roseburia -bsdb:1048/134/2_Microbiome:Unspiked-pig-feces(P2)-at-64-hours-(22°C)_vs_Unspiked-pig-feces(P2)-at-16-hours-(-20°C)_DOWN NA Prevotella -bsdb:1048/135/1_Microbiome:Unspiked-pig-feces(P2)-at-16-hours-(5°C)_vs_Unspiked-pig-feces(P2)-at-64-hours-(-20°C)_UP NA Treponema Faecalibacterium Roseburia -bsdb:1048/135/2_Microbiome:Unspiked-pig-feces(P2)-at-16-hours-(5°C)_vs_Unspiked-pig-feces(P2)-at-64-hours-(-20°C)_DOWN NA Prevotella Phascolarctobacterium -bsdb:1048/136/1_Microbiome:Unspiked-pig-feces(P2)-at-64-hours-(5°C)_vs_Unspiked-pig-feces(P2)-at-64-hours-(-20°C)_UP NA Treponema Faecalibacterium Phascolarctobacterium Roseburia -bsdb:1048/136/2_Microbiome:Unspiked-pig-feces(P2)-at-64-hours-(5°C)_vs_Unspiked-pig-feces(P2)-at-64-hours-(-20°C)_DOWN NA Prevotella -bsdb:1048/137/1_Microbiome:Unspiked-pig-feces(P2)-at-16-hours-(22°C)_vs_Unspiked-pig-feces(P2)-at-64-hours-(-20°C)_UP NA Faecalibacterium Treponema Roseburia Phascolarctobacterium -bsdb:1048/137/2_Microbiome:Unspiked-pig-feces(P2)-at-16-hours-(22°C)_vs_Unspiked-pig-feces(P2)-at-64-hours-(-20°C)_DOWN NA Prevotella -bsdb:1048/138/1_Microbiome:Unspiked-pig-feces(P2)-at-64-hours-(22°C)_vs_Unspiked-pig-feces(P2)-at-64-hours-(-20°C)_UP NA Treponema Faecalibacterium Phascolarctobacterium Roseburia -bsdb:1048/138/2_Microbiome:Unspiked-pig-feces(P2)-at-64-hours-(22°C)_vs_Unspiked-pig-feces(P2)-at-64-hours-(-20°C)_DOWN NA Prevotella -bsdb:1048/139/1_Microbiome:Unspiked-pig-feces(P2)-at-64-hours-(5°C)_vs_Unspiked-pig-feces(P2)-at-16-hours-(5°C)_UP NA Faecalibacterium Phascolarctobacterium Roseburia -bsdb:1048/139/2_Microbiome:Unspiked-pig-feces(P2)-at-64-hours-(5°C)_vs_Unspiked-pig-feces(P2)-at-16-hours-(5°C)_DOWN NA Prevotella Treponema -bsdb:1048/140/1_Microbiome:Unspiked-pig-feces(P2)-at-16-hours-(22°C)_vs_Unspiked-pig-feces(P2)-at-16-hours-(5°C)_UP NA Faecalibacterium Phascolarctobacterium Roseburia -bsdb:1048/140/2_Microbiome:Unspiked-pig-feces(P2)-at-16-hours-(22°C)_vs_Unspiked-pig-feces(P2)-at-16-hours-(5°C)_DOWN NA Prevotella Treponema -bsdb:1048/141/1_Microbiome:Unspiked-pig-feces(P2)-at-64-hours-(22°C)_vs_Unspiked-pig-feces(P2)-at-16-hours-(5°C)_UP NA Faecalibacterium Phascolarctobacterium Roseburia -bsdb:1048/141/2_Microbiome:Unspiked-pig-feces(P2)-at-64-hours-(22°C)_vs_Unspiked-pig-feces(P2)-at-16-hours-(5°C)_DOWN NA Prevotella Treponema -bsdb:1048/142/1_Microbiome:Unspiked-pig-feces(P2)-at-16-hours-(22°C)_vs_Unspiked-pig-feces(P2)-at-64-hours-(5°C)_UP NA Prevotella Treponema -bsdb:1048/142/2_Microbiome:Unspiked-pig-feces(P2)-at-16-hours-(22°C)_vs_Unspiked-pig-feces(P2)-at-64-hours-(5°C)_DOWN NA Faecalibacterium Phascolarctobacterium Roseburia -bsdb:1048/143/1_Microbiome:Unspiked-pig-feces(P2)-at-64-hours-(22°C)_vs_Unspiked-pig-feces(P2)-at-64-hours-(5°C)_UP NA Treponema Phascolarctobacterium -bsdb:1048/143/2_Microbiome:Unspiked-pig-feces(P2)-at-64-hours-(22°C)_vs_Unspiked-pig-feces(P2)-at-64-hours-(5°C)_DOWN NA Prevotella Faecalibacterium Roseburia -bsdb:1048/144/1_Microbiome:Unspiked-pig-feces(P2)-at-64-hours-(22°C)_vs_Unspiked-pig-feces(P2)-at-16-hours-(22°C)_UP NA Treponema Phascolarctobacterium Roseburia -bsdb:1048/144/2_Microbiome:Unspiked-pig-feces(P2)-at-64-hours-(22°C)_vs_Unspiked-pig-feces(P2)-at-16-hours-(22°C)_DOWN NA Faecalibacterium Prevotella -bsdb:1048/145/1_Microbiome:Unspiked-sewage-samples-(S1)-at-16-hours-(-80°C)_vs_Unspiked-sewage-samples-(S1)-at-0-hours_UP NA Arcobacter Prevotella Aeromonas -bsdb:1048/145/2_Microbiome:Unspiked-sewage-samples-(S1)-at-16-hours-(-80°C)_vs_Unspiked-sewage-samples-(S1)-at-0-hours_DOWN NA Acinetobacter Parabacteroides -bsdb:1048/146/1_Microbiome:Unspiked-sewage-samples-(S1)-at-64-hours-(-80°C)_vs_Unspiked-sewage-samples-(S1)-at-0-hours_UP NA Arcobacter Aeromonas -bsdb:1048/146/2_Microbiome:Unspiked-sewage-samples-(S1)-at-64-hours-(-80°C)_vs_Unspiked-sewage-samples-(S1)-at-0-hours_DOWN NA Acinetobacter Parabacteroides Prevotella -bsdb:1048/147/1_Microbiome:Unspiked-sewage-samples-(S1)-at-16-hours-(-20°C)_vs_Unspiked-sewage-samples-(S1)-at-0-hours_UP NA Arcobacter Aeromonas -bsdb:1048/147/2_Microbiome:Unspiked-sewage-samples-(S1)-at-16-hours-(-20°C)_vs_Unspiked-sewage-samples-(S1)-at-0-hours_DOWN NA Acinetobacter Parabacteroides Prevotella -bsdb:1048/148/1_Microbiome:Unspiked-sewage-samples-(S1)-at-64-hours-(-20°C)_vs_Unspiked-sewage-samples-(S1)-at-0-hours_UP NA Arcobacter Aeromonas Prevotella -bsdb:1048/148/2_Microbiome:Unspiked-sewage-samples-(S1)-at-64-hours-(-20°C)_vs_Unspiked-sewage-samples-(S1)-at-0-hours_DOWN NA Parabacteroides Acinetobacter -bsdb:1048/149/1_Microbiome:Unspiked-sewage-samples-(S1)-at-16-hours-(5°C)_vs_Unspiked-sewage-samples-(S1)-at-0-hours_UP NA Arcobacter Prevotella Aeromonas -bsdb:1048/149/2_Microbiome:Unspiked-sewage-samples-(S1)-at-16-hours-(5°C)_vs_Unspiked-sewage-samples-(S1)-at-0-hours_DOWN NA Acinetobacter Parabacteroides -bsdb:1048/150/1_Microbiome:Unspiked-sewage-samples-(S1)-at-64-hours-(5°C)_vs_Unspiked-sewage-samples-(S1)-at-0-hours_UP NA Parabacteroides Prevotella Aeromonas -bsdb:1048/150/2_Microbiome:Unspiked-sewage-samples-(S1)-at-64-hours-(5°C)_vs_Unspiked-sewage-samples-(S1)-at-0-hours_DOWN NA Arcobacter Acinetobacter -bsdb:1048/151/1_Microbiome:Unspiked-sewage-samples-(S1)-at-16-hours-(22°C)_vs_Unspiked-sewage-samples-(S1)-at-0-hours_UP NA Parabacteroides Prevotella Aeromonas -bsdb:1048/151/2_Microbiome:Unspiked-sewage-samples-(S1)-at-16-hours-(22°C)_vs_Unspiked-sewage-samples-(S1)-at-0-hours_DOWN NA Arcobacter Acinetobacter -bsdb:1048/152/1_Microbiome:Unspiked-sewage-samples-(S1)-at-64-hours-(22°C)_vs_Unspiked-sewage-samples-(S1)-at-0-hours_UP NA Prevotella Aeromonas -bsdb:1048/152/2_Microbiome:Unspiked-sewage-samples-(S1)-at-64-hours-(22°C)_vs_Unspiked-sewage-samples-(S1)-at-0-hours_DOWN NA Arcobacter Acinetobacter Parabacteroides -bsdb:1048/153/1_Microbiome:Unspiked-sewage-samples-(S1)-at-64-hours-(-80°C)_vs_Unspiked-sewage-samples-(S1)-at-16-hours-(-80°C)_UP NA Aeromonas -bsdb:1048/153/2_Microbiome:Unspiked-sewage-samples-(S1)-at-64-hours-(-80°C)_vs_Unspiked-sewage-samples-(S1)-at-16-hours-(-80°C)_DOWN NA Arcobacter Acinetobacter Parabacteroides Prevotella -bsdb:1048/154/1_Microbiome:Unspiked-sewage-samples-(S1)-at-16-hours-(-20°C)_vs_Unspiked-sewage-samples-(S1)-at-16-hours-(-80°C)_UP NA Acinetobacter -bsdb:1048/154/2_Microbiome:Unspiked-sewage-samples-(S1)-at-16-hours-(-20°C)_vs_Unspiked-sewage-samples-(S1)-at-16-hours-(-80°C)_DOWN NA Arcobacter Parabacteroides Prevotella Aeromonas -bsdb:1048/155/1_Microbiome:Unspiked-sewage-samples-(S1)-at-64-hours-(-20°C)_vs_Unspiked-sewage-samples-(S1)-at-16-hours-(-80°C)_UP NA Prevotella -bsdb:1048/155/2_Microbiome:Unspiked-sewage-samples-(S1)-at-64-hours-(-20°C)_vs_Unspiked-sewage-samples-(S1)-at-16-hours-(-80°C)_DOWN NA Arcobacter Acinetobacter Parabacteroides Aeromonas -bsdb:1048/156/1_Microbiome:Unspiked-sewage-samples-(S1)-at-16-hours-(5°C)_vs_Unspiked-sewage-samples-(S1)-at-16-hours-(-80°C)_UP NA Parabacteroides Prevotella -bsdb:1048/156/2_Microbiome:Unspiked-sewage-samples-(S1)-at-16-hours-(5°C)_vs_Unspiked-sewage-samples-(S1)-at-16-hours-(-80°C)_DOWN NA Arcobacter Acinetobacter Aeromonas -bsdb:1048/157/1_Microbiome:Unspiked-sewage-samples-(S1)-at-64-hours-(5°C)_vs_Unspiked-sewage-samples-(S1)-at-16-hours-(-80°C)_UP NA Parabacteroides -bsdb:1048/157/2_Microbiome:Unspiked-sewage-samples-(S1)-at-64-hours-(5°C)_vs_Unspiked-sewage-samples-(S1)-at-16-hours-(-80°C)_DOWN NA Arcobacter Acinetobacter Prevotella Aeromonas -bsdb:1048/158/1_Microbiome:Unspiked-sewage-samples-(S1)-at-16-hours-(22°C)_vs_Unspiked-sewage-samples-(S1)-at-16-hours-(-80°C)_UP NA Acinetobacter Parabacteroides Prevotella -bsdb:1048/158/2_Microbiome:Unspiked-sewage-samples-(S1)-at-16-hours-(22°C)_vs_Unspiked-sewage-samples-(S1)-at-16-hours-(-80°C)_DOWN NA Arcobacter Aeromonas -bsdb:1048/159/1_Microbiome:Unspiked-sewage-samples-(S1)-at-64-hours-(22°C)_vs_Unspiked-sewage-samples-(S1)-at-16-hours-(-80°C)_UP NA Prevotella Aeromonas -bsdb:1048/159/2_Microbiome:Unspiked-sewage-samples-(S1)-at-64-hours-(22°C)_vs_Unspiked-sewage-samples-(S1)-at-16-hours-(-80°C)_DOWN NA Arcobacter Acinetobacter Parabacteroides -bsdb:1048/160/1_Microbiome:Unspiked-sewage-samples-(S1)-at-16-hours-(-20°C)_vs_Unspiked-sewage-samples-(S1)-at-64-hours-(-80°C)_UP NA Arcobacter Acinetobacter Parabacteroides Aeromonas -bsdb:1048/160/2_Microbiome:Unspiked-sewage-samples-(S1)-at-16-hours-(-20°C)_vs_Unspiked-sewage-samples-(S1)-at-64-hours-(-80°C)_DOWN NA Prevotella -bsdb:1048/161/1_Microbiome:Unspiked-sewage-samples-(S1)-at-64-hours-(-20°C)_vs_Unspiked-sewage-samples-(S1)-at-64-hours-(-80°C)_UP NA Arcobacter Acinetobacter Parabacteroides Prevotella -bsdb:1048/161/2_Microbiome:Unspiked-sewage-samples-(S1)-at-64-hours-(-20°C)_vs_Unspiked-sewage-samples-(S1)-at-64-hours-(-80°C)_DOWN NA Aeromonas -bsdb:1048/162/1_Microbiome:Unspiked-sewage-samples-(S1)-at-16-hours-(5°C)_vs_Unspiked-sewage-samples-(S1)-at-64-hours-(-80°C)_UP NA Arcobacter Acinetobacter Parabacteroides Prevotella -bsdb:1048/162/2_Microbiome:Unspiked-sewage-samples-(S1)-at-16-hours-(5°C)_vs_Unspiked-sewage-samples-(S1)-at-64-hours-(-80°C)_DOWN NA Aeromonas -bsdb:1048/207/1_Microbiome:Unspiked-sewage-samples-(S2)-at-16-hours-(5°C)_vs_Unspiked-sewage-samples-(S2)-at-64-hours-(-20°C)_UP NA Parabacteroides -bsdb:1048/207/2_Microbiome:Unspiked-sewage-samples-(S2)-at-16-hours-(5°C)_vs_Unspiked-sewage-samples-(S2)-at-64-hours-(-20°C)_DOWN NA Arcobacter Acinetobacter Prevotella Aeromonas bsdb:1049/1/1_Atopic-eczema:cADtreat-dogs_vs_Healthy-dogs_UP NA Actinomycetota Bacteroidota bsdb:1049/1/2_Atopic-eczema:cADtreat-dogs_vs_Healthy-dogs_DOWN NA Arthrobacter Corynebacterium Pseudomonadota bsdb:1049/2/1_Atopic-eczema:cADpost-dogs_vs_cADpre-dogs_DOWN NA Arthrobacter Bacillus Deinococcus Pseudomonas Skermanella Pseudomonadota Bacteroidota Deinococcota @@ -4816,28 +4660,6 @@ bsdb:1049/43/1_Atopic-eczema:cADpre-dogs_vs_Healthy-dogs_UP NA Staphylococcus ps bsdb:1049/44/1_Atopic-eczema:cADtreat-dogs_vs_Healthy-dogs_DOWN NA Staphylococcus equorum Moraxella bsdb:1049/44/2_Atopic-eczema:cADtreat-dogs_vs_Healthy-dogs_UP NA Staphylococcus epidermidis Staphylococcus hominis Lautropia bsdb:1049/45/1_Atopic-eczema:cADpost-dogs_vs_cADpre-dogs_UP NA Staphylococcus hominis -bsdb:1049/46/1_Atopic-eczema:cADtreat-dogs_vs_Healthy-dogs_UP NA Pseudomonadota -bsdb:1049/47/1_Atopic-eczema:cADpre-dogs_vs_Healthy-dogs_UP NA Staphylococcus -bsdb:1049/48/1_Atopic-eczema:cADpost-dogs_vs_cADpre-dogs_DOWN NA Staphylococcus -bsdb:1049/49/1_Atopic-eczema:cADpre-dogs_vs_Healthy-dogs_UP NA Staphylococcus -bsdb:1049/50/1_Atopic-eczema:cADpre-dogs_vs_Healthy-dogs_UP NA Staphylococcus -bsdb:1049/51/1_Atopic-eczema:cADpost-dogs_vs_cADpre-dogs_DOWN NA Staphylococcus -bsdb:1049/52/1_Atopic-eczema:cADtreat-dogs_vs_cADpre-dogs_DOWN NA Staphylococcus -bsdb:1049/53/1_Atopic-eczema:cADpre-dogs_vs_Healthy-dogs_UP NA Staphylococcus -bsdb:1049/54/1_Atopic-eczema:cADpre-dogs_vs_Healthy-dogs_UP NA Staphylococcus -bsdb:1049/55/1_Atopic-eczema:cADpost-dogs_vs_cADpre-dogs_DOWN NA Staphylococcus -bsdb:1049/56/1_Atopic-eczema:cADtreat-dogs_vs_cADpre-dogs_DOWN NA Staphylococcus -bsdb:1049/57/1_Atopic-eczema:cADpre-dogs_vs_Healthy-dogs_UP NA Staphylococcus -bsdb:1049/58/1_Atopic-eczema:cADpost-dogs_vs_cADpre-dogs_DOWN NA Staphylococcus -bsdb:1049/59/1_Atopic-eczema:Mitochondrial-haplogroups-C_vs_Mitochondrial-haplogroups-A_DOWN NA Actinomycetota Campylobacterota Anaerostipes Bacillota Streptococcus Anaerotignum Blautia Amedibacterium -bsdb:1049/60/1_Atopic-eczema:Mitochondrial-haplogroups-C_vs_Mitochondrial-haplogroups-A_DOWN NA Actinomycetota Arthrobacter Bacteroides -bsdb:1049/61/1_Atopic-eczema:Mitochondrial-haplogroups-C_vs_Mitochondrial-haplogroups-A_UP NA Bacteroidota -bsdb:1049/61/2_Atopic-eczema:Mitochondrial-haplogroups-C_vs_Mitochondrial-haplogroups-A_DOWN NA Rubellimicrobium Haemophilus -bsdb:1049/62/1_Atopic-eczema:Mitochondrial-haplogroups-C_vs_Mitochondrial-haplogroups-A_UP NA Rothia Tannerella Stenotrophomonas -bsdb:1049/62/2_Atopic-eczema:Mitochondrial-haplogroups-C_vs_Mitochondrial-haplogroups-A_DOWN NA Actinomycetota Flavobacterium Pasteurella -bsdb:1049/63/1_Atopic-eczema:Mitochondrial-haplogroups-C_vs_Mitochondrial-haplogroups-A_DOWN NA Roseburia -bsdb:1049/64/1_Atopic-eczema:Mitochondrial-haplogroups-C_vs_Mitochondrial-haplogroups-A_UP NA Haemophilus -bsdb:1049/64/2_Atopic-eczema:Mitochondrial-haplogroups-C_vs_Mitochondrial-haplogroups-A_DOWN NA Bacteroides Capnocytophaga Neisseria bsdb:1050/1/1_Taxonomic-microbiome-measurement:Esophagus_vs_Oral-cavity_UP NA Acetobacteraceae Acinetobacter Actinobacillus Allobaculum Alphaproteobacteria Bacillaceae Bacillales Bacilli Bacillota Blautia Bradyrhizobium Brucellaceae Caulobacteraceae Caulobacterales Chitinophagaceae Chryseobacterium Coprococcus Enhydrobacter Enterobacterales Enterobacteriaceae Gammaproteobacteria Gemellaceae Hyphomicrobiales Intrasporangiaceae Lactobacillales Lysobacteraceae Lysobacterales Methylobacteriaceae Methylobacterium Nitrobacteraceae Novosphingobium Ochrobactrum Oscillospira Oscillospiraceae Oxalobacteraceae Pasteurellaceae Pasteurellales Phenylobacterium Propionibacterium Pseudomonadaceae Pseudomonadales Pseudomonas Ralstonia Rhodospirillaceae Rhodospirillales Saprospira Saprospirales Sediminibacterium Sphingobium Sphingomonadaceae Sphingomonadales Sphingomonas Staphylococcaceae Staphylococcus Stenotrophomonas Streptococcaceae Streptococcus Muribaculaceae bsdb:1050/1/2_Taxonomic-microbiome-measurement:Esophagus_vs_Oral-cavity_DOWN NA Actinomyces Actinomycetaceae Actinomycetales Actinomycetota Bacteroidales Bacteroidia Bacteroidota Betaproteobacteria Cardiobacteriaceae Cardiobacteriales Cardiobacterium Neisseria Neisseriaceae Neisseriales Paludibacter Selenomonas Candidatus Saccharibacteria bsdb:1050/2/1_Taxonomic-microbiome-measurement:Supragingival-plaque_vs_Saliva-and-tongue-dorsum_UP NA Bacteroidota Epsilonproteobacteria Flavobacteriia Fusobacteriota Fusobacteriia Spirochaetia Spirochaetota diff --git a/file_size.csv b/file_size.csv index bd411e1b9..bafd44431 100644 --- a/file_size.csv +++ b/file_size.csv @@ -2816,3 +2816,4 @@ "2025-01-26_07:58_UTC" "4918" "5690" "4918" "5690" "4918" "5690" "6741" "6741" "6741" "3022" "3022" "3022" "3022" "3022" "3022" "4544" "7834" "7424" "1384" "2025-01-26_08:58_UTC" "4918" "5690" "4918" "5690" "4918" "5690" "6741" "6741" "6741" "3022" "3022" "3022" "3022" "3022" "3022" "4544" "7834" "7424" "1384" "2025-01-26_09:58_UTC" "4918" "5690" "4918" "5690" "4918" "5690" "6741" "6741" "6741" "3022" "3022" "3022" "3022" "3022" "3022" "4544" "7834" "7424" "1384" +"2025-01-26_10:58_UTC" "4742" "5514" "4742" "5514" "4742" "5514" "6563" "6563" "6563" "3022" "3022" "3022" "3022" "3022" "3022" "4331" "7561" "7424" "1384" diff --git a/full_dump.csv b/full_dump.csv index 771e36f3a..71e8dc9d4 100644 --- a/full_dump.csv +++ b/full_dump.csv @@ -1,4 +1,4 @@ -# BugSigDB 2025-01-25_15:58_UTC, License: Creative Commons Attribution 4.0 International, URL: https://bugsigdb.org +# BugSigDB 2025-01-26_10:58_UTC, License: Creative Commons Attribution 4.0 International, URL: https://bugsigdb.org BSDB ID,Study,Study design,PMID,DOI,URL,Authors list,Title,Journal,Year,Keywords,Experiment,Location of subjects,Host species,Body site,UBERON ID,Condition,EFO ID,Group 0 name,Group 1 name,Group 1 definition,Group 0 sample size,Group 1 sample size,Antibiotics exclusion,Sequencing type,16S variable region,Sequencing platform,Statistical test,Significance threshold,MHT correction,LDA Score above,Matched on,Confounders controlled for,Pielou,Shannon,Chao1,Simpson,Inverse Simpson,Richness,Signature page name,Source,Curated date,Curator,Revision editor,Description,Abundance in Group 1,MetaPhlAn taxon names,NCBI Taxonomy IDs,State,Reviewer bsdb:1/1/1,Study 1,case-control,28038683,10.1186/s40168-016-0218-6,NA,"Peters BA, Dominianni C, Shapiro JA, Church TR, Wu J, Miller G, Yuen E, Freiman H, Lustbader I, Salik J, Friedlander C, Hayes RB , Ahn J",The gut microbiota in conventional and serrated precursors of colorectal cancer,Microbiome,2016,"Adenoma, Cancer, Colorectal, Microbiome, Microbiota, Polyp, Serrated",Experiment 1,United States of America,Homo sapiens,Feces,UBERON:0001988,Colorectal adenoma,EFO:0005406,controls,conventional adenoma cases,"conventional adenoma cases; those with at least one tubular or tubulovillous adenoma and no other polyps of hyperplastic, SSA, or unclassified histology. HP cases; having at least one HP, with no other polyps of tubular, tubulovillous, SSA, or unclassified histology. SSA cases; having at least one SSA, with or without HP(s), and with no other polyps of tubular, tubulovillous, or unclassified histology. Proximal polyps; polyps located in the cecum, ascending colon, hepatic flexure, transverse colon, or splenic flexure. Distal polyps; polyps located in the descending colon, sigmoid colon, or rectum.",323,144,NYU included who had not been on long-term antibiotic treatment,16S,4,Illumina,DESeq2,0.1,TRUE,NA,NA,"age,body mass index,sex",NA,decreased,NA,NA,NA,decreased,Signature 1,Table 2 + Supplemental Table S5 + S3+ S4,10 January 2021,Levi Waldron,WikiWorks,"Differential abundance was detected by the “DESeq” function in the DESeq2 package. All classes and genera with an FDR-adjusted q < 0.10 are included in the table. Models were adjusted for sex, age, study, and categorical BMI. See Additional file 1: Table S5 for comparisons at the phylum, order, and family level",increased,"k__Bacteria|p__Bacillota|c__Bacilli,k__Bacteria|p__Pseudomonadota|c__Gammaproteobacteria,k__Bacteria|p__Actinomycetota|c__Actinomycetes|o__Actinomycetales|f__Actinomycetaceae|g__Actinomyces,k__Bacteria|p__Actinomycetota|c__Actinomycetes|o__Mycobacteriales|f__Corynebacteriaceae|g__Corynebacterium,k__Bacteria|p__Bacillota|c__Bacilli|o__Lactobacillales|f__Streptococcaceae|g__Streptococcus,k__Bacteria|p__Bacillota|c__Tissierellia|o__Tissierellales|f__Peptoniphilaceae|g__Peptoniphilus,k__Bacteria|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Dorea,k__Bacteria|p__Bacillota|c__Negativicutes|o__Acidaminococcales|f__Acidaminococcaceae|g__Phascolarctobacterium,k__Bacteria|p__Pseudomonadota|c__Betaproteobacteria|o__Burkholderiales|f__Sutterellaceae|g__Sutterella,k__Bacteria|p__Actinomycetota|c__Actinomycetes|o__Actinomycetales,k__Bacteria|p__Actinomycetota|c__Actinomycetes|o__Actinomycetales|f__Actinomycetaceae,k__Bacteria|p__Pseudomonadota|c__Betaproteobacteria|o__Burkholderiales|f__Alcaligenaceae,k__Bacteria|p__Bacillota|c__Bacilli|o__Lactobacillales,k__Bacteria|p__Bacillota|c__Bacilli|o__Lactobacillales|f__Streptococcaceae,k__Bacteria|p__Bacillota|c__Negativicutes|o__Veillonellales|f__Veillonellaceae,k__Bacteria|p__Pseudomonadota|c__Gammaproteobacteria|o__Enterobacterales,k__Bacteria|p__Actinomycetota|c__Actinomycetes|o__Mycobacteriales|f__Corynebacteriaceae,k__Bacteria|p__Bacillota|c__Bacilli|o__Lactobacillales|f__Lactobacillaceae|g__Lacticaseibacillus|s__Lacticaseibacillus zeae,k__Bacteria|p__Bacillota|c__Bacilli|o__Bacillales|f__Bacillaceae|g__Bacillus,k__Bacteria|p__Bacillota|c__Bacilli|o__Bacillales|f__Bacillaceae",2|1239|91061;2|1224|1236;2|201174|1760|2037|2049|1654;2|201174|1760|85007|1653|1716;2|1239|91061|186826|1300|1301;2|1239|1737404|1737405|1570339|162289;2|1239|186801|3085636|186803|189330;2|1239|909932|1843488|909930|33024;2|1224|28216|80840|995019|40544;2|201174|1760|2037;2|201174|1760|2037|2049;2|1224|28216|80840|506;2|1239|91061|186826;2|1239|91061|186826|1300;2|1239|909932|1843489|31977;2|1224|1236|91347;2|201174|1760|85007|1653;2|1239|91061|186826|33958|2759736|57037;2|1239|91061|1385|186817|1386;2|1239|91061|1385|186817,Complete,Fatima bsdb:1/1/2,Study 1,case-control,28038683,10.1186/s40168-016-0218-6,NA,"Peters BA, Dominianni C, Shapiro JA, Church TR, Wu J, Miller G, Yuen E, Freiman H, Lustbader I, Salik J, Friedlander C, Hayes RB , Ahn J",The gut microbiota in conventional and serrated precursors of colorectal cancer,Microbiome,2016,"Adenoma, Cancer, Colorectal, Microbiome, Microbiota, Polyp, Serrated",Experiment 1,United States of America,Homo sapiens,Feces,UBERON:0001988,Colorectal adenoma,EFO:0005406,controls,conventional adenoma cases,"conventional adenoma cases; those with at least one tubular or tubulovillous adenoma and no other polyps of hyperplastic, SSA, or unclassified histology. HP cases; having at least one HP, with no other polyps of tubular, tubulovillous, SSA, or unclassified histology. SSA cases; having at least one SSA, with or without HP(s), and with no other polyps of tubular, tubulovillous, or unclassified histology. Proximal polyps; polyps located in the cecum, ascending colon, hepatic flexure, transverse colon, or splenic flexure. Distal polyps; polyps located in the descending colon, sigmoid colon, or rectum.",323,144,NYU included who had not been on long-term antibiotic treatment,16S,4,Illumina,DESeq2,0.1,TRUE,NA,NA,"age,body mass index,sex",NA,decreased,NA,NA,NA,decreased,Signature 2,Table 2 + Supplemental Table S5 + S3+ S4,10 January 2021,Levi Waldron,WikiWorks,"Differential abundance was detected by the “DESeq” function in the DESeq2 package. All classes and genera with an FDR-adjusted q < 0.10 are included in the table. Models were adjusted for sex, age, study, and categorical BMI. See Additional file 1: Table S5 for comparisons at the phylum, order, and family level",decreased,"k__Bacteria|p__Bacillota|c__Erysipelotrichia|o__Erysipelotrichales|f__Coprobacillaceae|g__Coprobacillus,k__Bacteria|p__Cyanobacteriota",2|1239|526524|526525|2810280|100883;2|1117,Complete,Shaimaa Elsafoury @@ -5366,257 +5366,6 @@ bsdb:1048/44/1,Study 1048,laboratory experiment,34612701,10.1128%2FSpectrum.0138 bsdb:1048/44/2,Study 1048,laboratory experiment,34612701,10.1128%2FSpectrum.01387-21,https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8510183/,"Poulsen CS, Kaas RS, Aarestrup FM , Pamp SJ",Standard Sample Storage Conditions Have an Impact on Inferred Microbiome Composition and Antimicrobial Resistance Patterns,Microbiology spectrum,2021,"antimicrobial resistance, bacteria, complex samples, freezing, metagenomics, microbial community composition, microbiome, mock community, parasite, sample storage, spiking, synthetic mock community",Experiment 44,Denmark,Sus scrofa domesticus,Feces,UBERON:0001988,Microbiome,EFO:0004982,Unspiked pig feces(P1) at 16 hours (-80°C),Unspiked pig feces(P1) at 16 hours (5°C),Unspiked P1 sample stored at a temperature of 5°C for 16 hours,1,1,NA,WMS,NA,Illumina,DESeq2,0.01,FALSE,NA,NA,NA,increased,NA,increased,increased,NA,NA,Signature 2,Figure 4,2 April 2024,Bolanle,Bolanle,There was lower abundance of the taxa in frozen samples than what was detected in samples processed immediately.,decreased,"k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella,k__Bacteria|p__Bacillota|c__Negativicutes|o__Acidaminococcales|f__Acidaminococcaceae|g__Phascolarctobacterium",2|976|200643|171549|171552|838;2|1239|909932|1843488|909930|33024,Complete,NA bsdb:1048/45/1,Study 1048,laboratory experiment,34612701,10.1128%2FSpectrum.01387-21,https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8510183/,"Poulsen CS, Kaas RS, Aarestrup FM , Pamp SJ",Standard Sample Storage Conditions Have an Impact on Inferred Microbiome Composition and Antimicrobial Resistance Patterns,Microbiology spectrum,2021,"antimicrobial resistance, bacteria, complex samples, freezing, metagenomics, microbial community composition, microbiome, mock community, parasite, sample storage, spiking, synthetic mock community",Experiment 45,Denmark,Sus scrofa domesticus,Feces,UBERON:0001988,Microbiome,EFO:0004982,Unspiked pig feces(P1) at 16 hours (-80°C),Unspiked pig feces(P1) at 64 hours (5°C),Unspiked P1 sample stored at a temperature of 5°C for 64 hours,1,1,NA,WMS,NA,Illumina,DESeq2,0.01,FALSE,NA,NA,NA,increased,NA,increased,increased,NA,NA,Signature 1,Figure 4,2 April 2024,Bolanle,Bolanle,higher abundance with increasing temperature and time was detected in samples processed immediately.,increased,"k__Bacteria|p__Spirochaetota|c__Spirochaetia|o__Spirochaetales|f__Treponemataceae|g__Treponema,k__Bacteria|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Faecalibacterium,k__Bacteria|p__Bacillota|c__Negativicutes|o__Acidaminococcales|f__Acidaminococcaceae|g__Phascolarctobacterium,k__Bacteria|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Roseburia",2|203691|203692|136|2845253|157;2|1239|186801|186802|216572|216851;2|1239|909932|1843488|909930|33024;2|1239|186801|3085636|186803|841,Complete,NA bsdb:1048/45/2,Study 1048,laboratory experiment,34612701,10.1128%2FSpectrum.01387-21,https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8510183/,"Poulsen CS, Kaas RS, Aarestrup FM , Pamp SJ",Standard Sample Storage Conditions Have an Impact on Inferred Microbiome Composition and Antimicrobial Resistance Patterns,Microbiology spectrum,2021,"antimicrobial resistance, bacteria, complex samples, freezing, metagenomics, microbial community composition, microbiome, mock community, parasite, sample storage, spiking, synthetic mock community",Experiment 45,Denmark,Sus scrofa domesticus,Feces,UBERON:0001988,Microbiome,EFO:0004982,Unspiked pig feces(P1) at 16 hours (-80°C),Unspiked pig feces(P1) at 64 hours (5°C),Unspiked P1 sample stored at a temperature of 5°C for 64 hours,1,1,NA,WMS,NA,Illumina,DESeq2,0.01,FALSE,NA,NA,NA,increased,NA,increased,increased,NA,NA,Signature 2,Figure 4,2 April 2024,Bolanle,Bolanle,There was lower abundance of the taxa in frozen samples than what was detected in samples processed immediately.,decreased,k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella,2|976|200643|171549|171552|838,Complete,NA -bsdb:1048/46/1,Study 1048,laboratory experiment,34612701,10.1128%2FSpectrum.01387-21,https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8510183/,"Poulsen CS, Kaas RS, Aarestrup FM , Pamp SJ",Standard Sample Storage Conditions Have an Impact on Inferred Microbiome Composition and Antimicrobial Resistance Patterns,Microbiology spectrum,2021,"antimicrobial resistance, bacteria, complex samples, freezing, metagenomics, microbial community composition, microbiome, mock community, parasite, sample storage, spiking, synthetic mock community",Experiment 46,Denmark,Sus scrofa domesticus,Feces,UBERON:0001988,Microbiome,EFO:0004982,Unspiked pig feces(P1) at 16 hours (-80°C),Unspiked pig feces(P1) at 16 hours (22°C),Unspiked P1 sample stored at a temperature of 22°C for 16 hours,1,1,NA,WMS,NA,Illumina,DESeq2,0.01,FALSE,NA,NA,NA,increased,NA,increased,increased,NA,NA,Signature 1,Figure 4,2 April 2024,Bolanle,Bolanle,higher abundance with increasing temperature and time was detected in samples processed immediately.,increased,"k__Bacteria|p__Spirochaetota|c__Spirochaetia|o__Spirochaetales|f__Treponemataceae|g__Treponema,k__Bacteria|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Faecalibacterium,k__Bacteria|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Roseburia",2|203691|203692|136|2845253|157;2|1239|186801|186802|216572|216851;2|1239|186801|3085636|186803|841,Complete,NA -bsdb:1048/46/2,Study 1048,laboratory experiment,34612701,10.1128%2FSpectrum.01387-21,https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8510183/,"Poulsen CS, Kaas RS, Aarestrup FM , Pamp SJ",Standard Sample Storage Conditions Have an Impact on Inferred Microbiome Composition and Antimicrobial Resistance Patterns,Microbiology spectrum,2021,"antimicrobial resistance, bacteria, complex samples, freezing, metagenomics, microbial community composition, microbiome, mock community, parasite, sample storage, spiking, synthetic mock community",Experiment 46,Denmark,Sus scrofa domesticus,Feces,UBERON:0001988,Microbiome,EFO:0004982,Unspiked pig feces(P1) at 16 hours (-80°C),Unspiked pig feces(P1) at 16 hours (22°C),Unspiked P1 sample stored at a temperature of 22°C for 16 hours,1,1,NA,WMS,NA,Illumina,DESeq2,0.01,FALSE,NA,NA,NA,increased,NA,increased,increased,NA,NA,Signature 2,Figure 4,2 April 2024,Bolanle,Bolanle,There was lower abundance of the taxa in frozen samples than what was detected in samples processed immediately.,decreased,"k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella,k__Bacteria|p__Bacillota|c__Negativicutes|o__Acidaminococcales|f__Acidaminococcaceae|g__Phascolarctobacterium",2|976|200643|171549|171552|838;2|1239|909932|1843488|909930|33024,Complete,NA -bsdb:1048/47/1,Study 1048,laboratory experiment,34612701,10.1128%2FSpectrum.01387-21,https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8510183/,"Poulsen CS, Kaas RS, Aarestrup FM , Pamp SJ",Standard Sample Storage Conditions Have an Impact on Inferred Microbiome Composition and Antimicrobial Resistance Patterns,Microbiology spectrum,2021,"antimicrobial resistance, bacteria, complex samples, freezing, metagenomics, microbial community composition, microbiome, mock community, parasite, sample storage, spiking, synthetic mock community",Experiment 47,Denmark,Sus scrofa domesticus,Feces,UBERON:0001988,Microbiome,EFO:0004982,Unspiked pig feces(P1) at 16 hours (-80°C),Unspiked pig feces(P1) at 64 hours (22°C),Unspiked P1 sample stored at a temperature of 22°C for 64 hours,1,1,NA,WMS,NA,Illumina,DESeq2,0.01,FALSE,NA,NA,NA,increased,NA,increased,increased,NA,NA,Signature 1,Figure 4,2 April 2024,Bolanle,Bolanle,higher abundance with increasing temperature and time was detected in samples processed imm,increased,"k__Bacteria|p__Spirochaetota|c__Spirochaetia|o__Spirochaetales|f__Treponemataceae|g__Treponema,k__Bacteria|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Faecalibacterium",2|203691|203692|136|2845253|157;2|1239|186801|186802|216572|216851,Complete,NA -bsdb:1048/47/2,Study 1048,laboratory experiment,34612701,10.1128%2FSpectrum.01387-21,https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8510183/,"Poulsen CS, Kaas RS, Aarestrup FM , Pamp SJ",Standard Sample Storage Conditions Have an Impact on Inferred Microbiome Composition and Antimicrobial Resistance Patterns,Microbiology spectrum,2021,"antimicrobial resistance, bacteria, complex samples, freezing, metagenomics, microbial community composition, microbiome, mock community, parasite, sample storage, spiking, synthetic mock community",Experiment 47,Denmark,Sus scrofa domesticus,Feces,UBERON:0001988,Microbiome,EFO:0004982,Unspiked pig feces(P1) at 16 hours (-80°C),Unspiked pig feces(P1) at 64 hours (22°C),Unspiked P1 sample stored at a temperature of 22°C for 64 hours,1,1,NA,WMS,NA,Illumina,DESeq2,0.01,FALSE,NA,NA,NA,increased,NA,increased,increased,NA,NA,Signature 2,Figure 4,2 April 2024,Bolanle,Bolanle,lower abundance with increasing temperature and time was detected in samples processed immediately,decreased,k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella,2|976|200643|171549|171552|838,Complete,NA -bsdb:1048/48/1,Study 1048,laboratory experiment,34612701,10.1128%2FSpectrum.01387-21,https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8510183/,"Poulsen CS, Kaas RS, Aarestrup FM , Pamp SJ",Standard Sample Storage Conditions Have an Impact on Inferred Microbiome Composition and Antimicrobial Resistance Patterns,Microbiology spectrum,2021,"antimicrobial resistance, bacteria, complex samples, freezing, metagenomics, microbial community composition, microbiome, mock community, parasite, sample storage, spiking, synthetic mock community",Experiment 48,Denmark,Sus scrofa domesticus,Feces,UBERON:0001988,Microbiome,EFO:0004982,Unspiked pig feces(P1) at 64 hours (-80°C),Unspiked pig feces(P1) at 16 hours (-20°C),Unspiked P1 sample stored at a temperature of -20°C for 16 hours,1,1,NA,WMS,NA,Illumina,DESeq2,0.01,FALSE,NA,NA,NA,unchanged,NA,increased,unchanged,NA,NA,Signature 1,Figure 4,2 April 2024,Bolanle,Bolanle,higher abundance with increasing temperature and time was detected in samples processed immediately.,increased,"k__Bacteria|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Faecalibacterium,k__Bacteria|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Roseburia",2|1239|186801|186802|216572|216851;2|1239|186801|3085636|186803|841,Complete,NA -bsdb:1048/48/2,Study 1048,laboratory experiment,34612701,10.1128%2FSpectrum.01387-21,https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8510183/,"Poulsen CS, Kaas RS, Aarestrup FM , Pamp SJ",Standard Sample Storage Conditions Have an Impact on Inferred Microbiome Composition and Antimicrobial Resistance Patterns,Microbiology spectrum,2021,"antimicrobial resistance, bacteria, complex samples, freezing, metagenomics, microbial community composition, microbiome, mock community, parasite, sample storage, spiking, synthetic mock community",Experiment 48,Denmark,Sus scrofa domesticus,Feces,UBERON:0001988,Microbiome,EFO:0004982,Unspiked pig feces(P1) at 64 hours (-80°C),Unspiked pig feces(P1) at 16 hours (-20°C),Unspiked P1 sample stored at a temperature of -20°C for 16 hours,1,1,NA,WMS,NA,Illumina,DESeq2,0.01,FALSE,NA,NA,NA,unchanged,NA,increased,unchanged,NA,NA,Signature 2,Figure 4,2 April 2024,Bolanle,Bolanle,There was lower abundance of the taxa in frozen samples than what was detected in samples processed immediately.,decreased,"k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella,k__Bacteria|p__Spirochaetota|c__Spirochaetia|o__Spirochaetales|f__Treponemataceae|g__Treponema,k__Bacteria|p__Bacillota|c__Negativicutes|o__Acidaminococcales|f__Acidaminococcaceae|g__Phascolarctobacterium",2|976|200643|171549|171552|838;2|203691|203692|136|2845253|157;2|1239|909932|1843488|909930|33024,Complete,NA -bsdb:1048/49/1,Study 1048,laboratory experiment,34612701,10.1128%2FSpectrum.01387-21,https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8510183/,"Poulsen CS, Kaas RS, Aarestrup FM , Pamp SJ",Standard Sample Storage Conditions Have an Impact on Inferred Microbiome Composition and Antimicrobial Resistance Patterns,Microbiology spectrum,2021,"antimicrobial resistance, bacteria, complex samples, freezing, metagenomics, microbial community composition, microbiome, mock community, parasite, sample storage, spiking, synthetic mock community",Experiment 49,Denmark,Sus scrofa domesticus,Feces,UBERON:0001988,Microbiome,EFO:0004982,Unspiked pig feces(P1) at 64 hours (-80°C),Unspiked pig feces(P1) at 64 hours (-20°C),Unspiked P1 sample stored at a temperature of -20°C for 64 hours,1,1,NA,WMS,NA,Illumina,DESeq2,0.01,FALSE,NA,NA,NA,unchanged,NA,increased,unchanged,NA,NA,Signature 1,Figure 4,2 April 2024,Bolanle,Bolanle,higher abundance with increasing temperature and time was detected in samples processed immediately.,increased,"k__Bacteria|p__Spirochaetota|c__Spirochaetia|o__Spirochaetales|f__Treponemataceae|g__Treponema,k__Bacteria|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Faecalibacterium,k__Bacteria|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Roseburia",2|203691|203692|136|2845253|157;2|1239|186801|186802|216572|216851;2|1239|186801|3085636|186803|841,Complete,NA -bsdb:1048/49/2,Study 1048,laboratory experiment,34612701,10.1128%2FSpectrum.01387-21,https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8510183/,"Poulsen CS, Kaas RS, Aarestrup FM , Pamp SJ",Standard Sample Storage Conditions Have an Impact on Inferred Microbiome Composition and Antimicrobial Resistance Patterns,Microbiology spectrum,2021,"antimicrobial resistance, bacteria, complex samples, freezing, metagenomics, microbial community composition, microbiome, mock community, parasite, sample storage, spiking, synthetic mock community",Experiment 49,Denmark,Sus scrofa domesticus,Feces,UBERON:0001988,Microbiome,EFO:0004982,Unspiked pig feces(P1) at 64 hours (-80°C),Unspiked pig feces(P1) at 64 hours (-20°C),Unspiked P1 sample stored at a temperature of -20°C for 64 hours,1,1,NA,WMS,NA,Illumina,DESeq2,0.01,FALSE,NA,NA,NA,unchanged,NA,increased,unchanged,NA,NA,Signature 2,Figure 4,2 April 2024,Bolanle,Bolanle,There was lower abundance of the taxa in frozen samples than what was detected in samples processed immediately.,decreased,"k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella,k__Bacteria|p__Bacillota|c__Negativicutes|o__Acidaminococcales|f__Acidaminococcaceae|g__Phascolarctobacterium",2|976|200643|171549|171552|838;2|1239|909932|1843488|909930|33024,Complete,NA -bsdb:1048/50/1,Study 1048,laboratory experiment,34612701,10.1128%2FSpectrum.01387-21,https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8510183/,"Poulsen CS, Kaas RS, Aarestrup FM , Pamp SJ",Standard Sample Storage Conditions Have an Impact on Inferred Microbiome Composition and Antimicrobial Resistance Patterns,Microbiology spectrum,2021,"antimicrobial resistance, bacteria, complex samples, freezing, metagenomics, microbial community composition, microbiome, mock community, parasite, sample storage, spiking, synthetic mock community",Experiment 50,Denmark,Sus scrofa domesticus,Feces,UBERON:0001988,Microbiome,EFO:0004982,Unspiked pig feces(P1) at 64 hours (-80°C),Unspiked pig feces(P1) at 16 hours (5°C),Unspiked P1 sample stored at a temperature of 5°C for 16 hours,1,1,NA,WMS,NA,Illumina,DESeq2,0.01,FALSE,NA,NA,NA,increased,NA,increased,increased,NA,NA,Signature 1,Figure 4,2 April 2024,Bolanle,Bolanle,higher abundance with increasing temperature and time was detected in samples processed immediately.,increased,"k__Bacteria|p__Spirochaetota|c__Spirochaetia|o__Spirochaetales|f__Treponemataceae|g__Treponema,k__Bacteria|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Faecalibacterium,k__Bacteria|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Roseburia",2|203691|203692|136|2845253|157;2|1239|186801|186802|216572|216851;2|1239|186801|3085636|186803|841,Complete,NA -bsdb:1048/50/2,Study 1048,laboratory experiment,34612701,10.1128%2FSpectrum.01387-21,https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8510183/,"Poulsen CS, Kaas RS, Aarestrup FM , Pamp SJ",Standard Sample Storage Conditions Have an Impact on Inferred Microbiome Composition and Antimicrobial Resistance Patterns,Microbiology spectrum,2021,"antimicrobial resistance, bacteria, complex samples, freezing, metagenomics, microbial community composition, microbiome, mock community, parasite, sample storage, spiking, synthetic mock community",Experiment 50,Denmark,Sus scrofa domesticus,Feces,UBERON:0001988,Microbiome,EFO:0004982,Unspiked pig feces(P1) at 64 hours (-80°C),Unspiked pig feces(P1) at 16 hours (5°C),Unspiked P1 sample stored at a temperature of 5°C for 16 hours,1,1,NA,WMS,NA,Illumina,DESeq2,0.01,FALSE,NA,NA,NA,increased,NA,increased,increased,NA,NA,Signature 2,Figure 4,2 April 2024,Bolanle,Bolanle,There was lower abundance of the taxa in frozen samples than what was detected in samples processed immediately.,decreased,"k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella,k__Bacteria|p__Bacillota|c__Negativicutes|o__Acidaminococcales|f__Acidaminococcaceae|g__Phascolarctobacterium",2|976|200643|171549|171552|838;2|1239|909932|1843488|909930|33024,Complete,NA -bsdb:1048/51/1,Study 1048,laboratory experiment,34612701,10.1128%2FSpectrum.01387-21,https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8510183/,"Poulsen CS, Kaas RS, Aarestrup FM , Pamp SJ",Standard Sample Storage Conditions Have an Impact on Inferred Microbiome Composition and Antimicrobial Resistance Patterns,Microbiology spectrum,2021,"antimicrobial resistance, bacteria, complex samples, freezing, metagenomics, microbial community composition, microbiome, mock community, parasite, sample storage, spiking, synthetic mock community",Experiment 51,Denmark,Sus scrofa domesticus,Feces,UBERON:0001988,Microbiome,EFO:0004982,Unspiked pig feces(P1) at 64 hours (-80°C),Unspiked pig feces(P1) at 64 hours (5°C),Unspiked P1 sample stored at a temperature of 5°C for 64 hours,1,1,NA,WMS,NA,Illumina,DESeq2,0.01,FALSE,NA,NA,NA,increased,NA,increased,increased,NA,NA,Signature 1,Figure 4,2 April 2024,Bolanle,Bolanle,higher abundance with increasing temperature and time was detected in samples processed immediately.,increased,"k__Bacteria|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Faecalibacterium,k__Bacteria|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Roseburia",2|1239|186801|186802|216572|216851;2|1239|186801|3085636|186803|841,Complete,NA -bsdb:1048/51/2,Study 1048,laboratory experiment,34612701,10.1128%2FSpectrum.01387-21,https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8510183/,"Poulsen CS, Kaas RS, Aarestrup FM , Pamp SJ",Standard Sample Storage Conditions Have an Impact on Inferred Microbiome Composition and Antimicrobial Resistance Patterns,Microbiology spectrum,2021,"antimicrobial resistance, bacteria, complex samples, freezing, metagenomics, microbial community composition, microbiome, mock community, parasite, sample storage, spiking, synthetic mock community",Experiment 51,Denmark,Sus scrofa domesticus,Feces,UBERON:0001988,Microbiome,EFO:0004982,Unspiked pig feces(P1) at 64 hours (-80°C),Unspiked pig feces(P1) at 64 hours (5°C),Unspiked P1 sample stored at a temperature of 5°C for 64 hours,1,1,NA,WMS,NA,Illumina,DESeq2,0.01,FALSE,NA,NA,NA,increased,NA,increased,increased,NA,NA,Signature 2,Figure 4,2 April 2024,Bolanle,Bolanle,There was lower abundance of the taxa in frozen samples than what was detected in samples processed immediately.,decreased,"k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella,k__Bacteria|p__Spirochaetota|c__Spirochaetia|o__Spirochaetales|f__Treponemataceae|g__Treponema,k__Bacteria|p__Bacillota|c__Negativicutes|o__Acidaminococcales|f__Acidaminococcaceae|g__Phascolarctobacterium",2|976|200643|171549|171552|838;2|203691|203692|136|2845253|157;2|1239|909932|1843488|909930|33024,Complete,NA -bsdb:1048/52/1,Study 1048,laboratory experiment,34612701,10.1128%2FSpectrum.01387-21,https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8510183/,"Poulsen CS, Kaas RS, Aarestrup FM , Pamp SJ",Standard Sample Storage Conditions Have an Impact on Inferred Microbiome Composition and Antimicrobial Resistance Patterns,Microbiology spectrum,2021,"antimicrobial resistance, bacteria, complex samples, freezing, metagenomics, microbial community composition, microbiome, mock community, parasite, sample storage, spiking, synthetic mock community",Experiment 52,Denmark,Sus scrofa domesticus,Feces,UBERON:0001988,Microbiome,EFO:0004982,Unspiked pig feces(P1) at 64 hours (-80°C),Unspiked pig feces(P1) at 16 hours (22°C),Unspiked P1 sample stored at a temperature of 22°C for 16 hours,1,1,NA,WMS,NA,Illumina,DESeq2,0.01,FALSE,NA,NA,NA,increased,NA,increased,increased,NA,NA,Signature 1,Figure 4,2 April 2024,Bolanle,Bolanle,higher abundance with increasing temperature and time was detected in samples processed immediately.,increased,"k__Bacteria|p__Spirochaetota|c__Spirochaetia|o__Spirochaetales|f__Treponemataceae|g__Treponema,k__Bacteria|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Faecalibacterium,k__Bacteria|p__Bacillota|c__Negativicutes|o__Acidaminococcales|f__Acidaminococcaceae|g__Phascolarctobacterium,k__Bacteria|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Roseburia",2|203691|203692|136|2845253|157;2|1239|186801|186802|216572|216851;2|1239|909932|1843488|909930|33024;2|1239|186801|3085636|186803|841,Complete,NA -bsdb:1048/52/2,Study 1048,laboratory experiment,34612701,10.1128%2FSpectrum.01387-21,https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8510183/,"Poulsen CS, Kaas RS, Aarestrup FM , Pamp SJ",Standard Sample Storage Conditions Have an Impact on Inferred Microbiome Composition and Antimicrobial Resistance Patterns,Microbiology spectrum,2021,"antimicrobial resistance, bacteria, complex samples, freezing, metagenomics, microbial community composition, microbiome, mock community, parasite, sample storage, spiking, synthetic mock community",Experiment 52,Denmark,Sus scrofa domesticus,Feces,UBERON:0001988,Microbiome,EFO:0004982,Unspiked pig feces(P1) at 64 hours (-80°C),Unspiked pig feces(P1) at 16 hours (22°C),Unspiked P1 sample stored at a temperature of 22°C for 16 hours,1,1,NA,WMS,NA,Illumina,DESeq2,0.01,FALSE,NA,NA,NA,increased,NA,increased,increased,NA,NA,Signature 2,Figure 4,2 April 2024,Bolanle,Bolanle,There was lower abundance of the taxa in frozen samples than what was detected in samples processed immediately.,decreased,k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella,2|976|200643|171549|171552|838,Complete,NA -bsdb:1048/53/1,Study 1048,laboratory experiment,34612701,10.1128%2FSpectrum.01387-21,https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8510183/,"Poulsen CS, Kaas RS, Aarestrup FM , Pamp SJ",Standard Sample Storage Conditions Have an Impact on Inferred Microbiome Composition and Antimicrobial Resistance Patterns,Microbiology spectrum,2021,"antimicrobial resistance, bacteria, complex samples, freezing, metagenomics, microbial community composition, microbiome, mock community, parasite, sample storage, spiking, synthetic mock community",Experiment 53,Denmark,Sus scrofa domesticus,Feces,UBERON:0001988,Microbiome,EFO:0004982,Unspiked pig feces(P1) at 64 hours (-80°C),Unspiked pig feces(P1) at 64 hours (22°C),Unspiked P1 sample stored at a temperature of 22°C for 64 hours,1,1,NA,WMS,NA,Illumina,DESeq2,0.01,FALSE,NA,NA,NA,increased,NA,increased,increased,NA,NA,Signature 1,Figure 4,2 April 2024,Bolanle,Bolanle,higher abundance with increasing temperature and time was detected in samples processed immediately.,increased,"k__Bacteria|p__Spirochaetota|c__Spirochaetia|o__Spirochaetales|f__Treponemataceae|g__Treponema,k__Bacteria|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Faecalibacterium,k__Bacteria|p__Bacillota|c__Negativicutes|o__Acidaminococcales|f__Acidaminococcaceae|g__Phascolarctobacterium,k__Bacteria|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Roseburia",2|203691|203692|136|2845253|157;2|1239|186801|186802|216572|216851;2|1239|909932|1843488|909930|33024;2|1239|186801|3085636|186803|841,Complete,NA -bsdb:1048/53/2,Study 1048,laboratory experiment,34612701,10.1128%2FSpectrum.01387-21,https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8510183/,"Poulsen CS, Kaas RS, Aarestrup FM , Pamp SJ",Standard Sample Storage Conditions Have an Impact on Inferred Microbiome Composition and Antimicrobial Resistance Patterns,Microbiology spectrum,2021,"antimicrobial resistance, bacteria, complex samples, freezing, metagenomics, microbial community composition, microbiome, mock community, parasite, sample storage, spiking, synthetic mock community",Experiment 53,Denmark,Sus scrofa domesticus,Feces,UBERON:0001988,Microbiome,EFO:0004982,Unspiked pig feces(P1) at 64 hours (-80°C),Unspiked pig feces(P1) at 64 hours (22°C),Unspiked P1 sample stored at a temperature of 22°C for 64 hours,1,1,NA,WMS,NA,Illumina,DESeq2,0.01,FALSE,NA,NA,NA,increased,NA,increased,increased,NA,NA,Signature 2,Figure 4,2 April 2024,Bolanle,Bolanle,lower abundance with increasing temperature and time was detected in samples processed immediately.,decreased,k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella,2|976|200643|171549|171552|838,Complete,NA -bsdb:1048/54/1,Study 1048,laboratory experiment,34612701,10.1128%2FSpectrum.01387-21,https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8510183/,"Poulsen CS, Kaas RS, Aarestrup FM , Pamp SJ",Standard Sample Storage Conditions Have an Impact on Inferred Microbiome Composition and Antimicrobial Resistance Patterns,Microbiology spectrum,2021,"antimicrobial resistance, bacteria, complex samples, freezing, metagenomics, microbial community composition, microbiome, mock community, parasite, sample storage, spiking, synthetic mock community",Experiment 54,Denmark,Sus scrofa domesticus,Feces,UBERON:0001988,Microbiome,EFO:0004982,Unspiked pig feces(P1) at 16 hours (-20°C),Unspiked pig feces(P1) at 64 hours (-20°C),Unspiked P1 sample stored at a temperature of -20°C for 64 hours,1,1,NA,WMS,NA,Illumina,DESeq2,0.01,FALSE,NA,NA,NA,unchanged,NA,decreased,unchanged,NA,NA,Signature 1,Figure 4,2 April 2024,Bolanle,Bolanle,higher abundance with increasing temperature and time was detected in samples processed immediately.,increased,k__Bacteria|p__Spirochaetota|c__Spirochaetia|o__Spirochaetales|f__Treponemataceae|g__Treponema,2|203691|203692|136|2845253|157,Complete,NA -bsdb:1048/54/2,Study 1048,laboratory experiment,34612701,10.1128%2FSpectrum.01387-21,https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8510183/,"Poulsen CS, Kaas RS, Aarestrup FM , Pamp SJ",Standard Sample Storage Conditions Have an Impact on Inferred Microbiome Composition and Antimicrobial Resistance Patterns,Microbiology spectrum,2021,"antimicrobial resistance, bacteria, complex samples, freezing, metagenomics, microbial community composition, microbiome, mock community, parasite, sample storage, spiking, synthetic mock community",Experiment 54,Denmark,Sus scrofa domesticus,Feces,UBERON:0001988,Microbiome,EFO:0004982,Unspiked pig feces(P1) at 16 hours (-20°C),Unspiked pig feces(P1) at 64 hours (-20°C),Unspiked P1 sample stored at a temperature of -20°C for 64 hours,1,1,NA,WMS,NA,Illumina,DESeq2,0.01,FALSE,NA,NA,NA,unchanged,NA,decreased,unchanged,NA,NA,Signature 2,Figure 4,2 April 2024,Bolanle,Bolanle,There was lower abundance of the taxa in frozen samples than what was detected in samples processed immediately.,decreased,"k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella,k__Bacteria|p__Bacillota|c__Negativicutes|o__Acidaminococcales|f__Acidaminococcaceae|g__Phascolarctobacterium,k__Bacteria|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Faecalibacterium,k__Bacteria|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Roseburia",2|976|200643|171549|171552|838;2|1239|909932|1843488|909930|33024;2|1239|186801|186802|216572|216851;2|1239|186801|3085636|186803|841,Complete,NA -bsdb:1048/55/1,Study 1048,laboratory experiment,34612701,10.1128%2FSpectrum.01387-21,https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8510183/,"Poulsen CS, Kaas RS, Aarestrup FM , Pamp SJ",Standard Sample Storage Conditions Have an Impact on Inferred Microbiome Composition and Antimicrobial Resistance Patterns,Microbiology spectrum,2021,"antimicrobial resistance, bacteria, complex samples, freezing, metagenomics, microbial community composition, microbiome, mock community, parasite, sample storage, spiking, synthetic mock community",Experiment 55,Denmark,Sus scrofa domesticus,Feces,UBERON:0001988,Microbiome,EFO:0004982,Unspiked pig feces(P1) at 16 hours (-20°C),Unspiked pig feces(P1) at 16 hours (5°C),Unspiked P1 sample stored at a temperature of 5°C for 16 hours,1,1,NA,WMS,NA,Illumina,DESeq2,0.01,FALSE,NA,NA,NA,increased,NA,increased,increased,NA,NA,Signature 1,Figure 4,2 April 2024,Bolanle,Bolanle,higher abundance with increasing temperature and time was detected in samples processed immediately.,increased,"k__Bacteria|p__Spirochaetota|c__Spirochaetia|o__Spirochaetales|f__Treponemataceae|g__Treponema,k__Bacteria|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Faecalibacterium,k__Bacteria|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Roseburia",2|203691|203692|136|2845253|157;2|1239|186801|186802|216572|216851;2|1239|186801|3085636|186803|841,Complete,NA -bsdb:1048/55/2,Study 1048,laboratory experiment,34612701,10.1128%2FSpectrum.01387-21,https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8510183/,"Poulsen CS, Kaas RS, Aarestrup FM , Pamp SJ",Standard Sample Storage Conditions Have an Impact on Inferred Microbiome Composition and Antimicrobial Resistance Patterns,Microbiology spectrum,2021,"antimicrobial resistance, bacteria, complex samples, freezing, metagenomics, microbial community composition, microbiome, mock community, parasite, sample storage, spiking, synthetic mock community",Experiment 55,Denmark,Sus scrofa domesticus,Feces,UBERON:0001988,Microbiome,EFO:0004982,Unspiked pig feces(P1) at 16 hours (-20°C),Unspiked pig feces(P1) at 16 hours (5°C),Unspiked P1 sample stored at a temperature of 5°C for 16 hours,1,1,NA,WMS,NA,Illumina,DESeq2,0.01,FALSE,NA,NA,NA,increased,NA,increased,increased,NA,NA,Signature 2,Figure 4,2 April 2024,Bolanle,Bolanle,There was lower abundance of the taxa in frozen samples than what was detected in samples processed immediately.,decreased,"k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella,k__Bacteria|p__Bacillota|c__Negativicutes|o__Acidaminococcales|f__Acidaminococcaceae|g__Phascolarctobacterium",2|976|200643|171549|171552|838;2|1239|909932|1843488|909930|33024,Complete,NA -bsdb:1048/56/1,Study 1048,laboratory experiment,34612701,10.1128%2FSpectrum.01387-21,https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8510183/,"Poulsen CS, Kaas RS, Aarestrup FM , Pamp SJ",Standard Sample Storage Conditions Have an Impact on Inferred Microbiome Composition and Antimicrobial Resistance Patterns,Microbiology spectrum,2021,"antimicrobial resistance, bacteria, complex samples, freezing, metagenomics, microbial community composition, microbiome, mock community, parasite, sample storage, spiking, synthetic mock community",Experiment 56,Denmark,Sus scrofa domesticus,Feces,UBERON:0001988,Microbiome,EFO:0004982,Unspiked pig feces(P1) at 16 hours (-20°C),Unspiked pig feces(P1) at 64 hours (5°C),Unspiked P1 sample stored at a temperature of 5°C for 64 hours,1,1,NA,WMS,NA,Illumina,DESeq2,0.01,FALSE,NA,NA,NA,increased,NA,decreased,increased,NA,NA,Signature 1,Figure 4,2 April 2024,Bolanle,Bolanle,higher abundance with increasing temperature and time was detected in samples processed immediately.,increased,"k__Bacteria|p__Spirochaetota|c__Spirochaetia|o__Spirochaetales|f__Treponemataceae|g__Treponema,k__Bacteria|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Faecalibacterium,k__Bacteria|p__Bacillota|c__Negativicutes|o__Acidaminococcales|f__Acidaminococcaceae|g__Phascolarctobacterium,k__Bacteria|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Roseburia",2|203691|203692|136|2845253|157;2|1239|186801|186802|216572|216851;2|1239|909932|1843488|909930|33024;2|1239|186801|3085636|186803|841,Complete,NA -bsdb:1048/56/2,Study 1048,laboratory experiment,34612701,10.1128%2FSpectrum.01387-21,https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8510183/,"Poulsen CS, Kaas RS, Aarestrup FM , Pamp SJ",Standard Sample Storage Conditions Have an Impact on Inferred Microbiome Composition and Antimicrobial Resistance Patterns,Microbiology spectrum,2021,"antimicrobial resistance, bacteria, complex samples, freezing, metagenomics, microbial community composition, microbiome, mock community, parasite, sample storage, spiking, synthetic mock community",Experiment 56,Denmark,Sus scrofa domesticus,Feces,UBERON:0001988,Microbiome,EFO:0004982,Unspiked pig feces(P1) at 16 hours (-20°C),Unspiked pig feces(P1) at 64 hours (5°C),Unspiked P1 sample stored at a temperature of 5°C for 64 hours,1,1,NA,WMS,NA,Illumina,DESeq2,0.01,FALSE,NA,NA,NA,increased,NA,decreased,increased,NA,NA,Signature 2,Figure 4,2 April 2024,Bolanle,Bolanle,There was lower abundance of the taxa in frozen samples than what was detected in samples processed immediately.,decreased,k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella,2|976|200643|171549|171552|838,Complete,NA -bsdb:1048/57/1,Study 1048,laboratory experiment,34612701,10.1128%2FSpectrum.01387-21,https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8510183/,"Poulsen CS, Kaas RS, Aarestrup FM , Pamp SJ",Standard Sample Storage Conditions Have an Impact on Inferred Microbiome Composition and Antimicrobial Resistance Patterns,Microbiology spectrum,2021,"antimicrobial resistance, bacteria, complex samples, freezing, metagenomics, microbial community composition, microbiome, mock community, parasite, sample storage, spiking, synthetic mock community",Experiment 57,Denmark,Sus scrofa domesticus,Feces,UBERON:0001988,Microbiome,EFO:0004982,Unspiked pig feces(P1) at 16 hours (-20°C),Unspiked pig feces(P1) at 16 hours (22°C),Unspiked P1 sample stored at a temperature of 22°C for 16 hours,1,1,NA,WMS,NA,Illumina,DESeq2,0.01,FALSE,NA,NA,NA,increased,NA,decreased,increased,NA,NA,Signature 1,Figure 4,3 April 2024,Bolanle,Bolanle,higher abundance with increasing temperature and time was detected in samples processed immediately.,increased,"k__Bacteria|p__Spirochaetota|c__Spirochaetia|o__Spirochaetales|f__Treponemataceae|g__Treponema,k__Bacteria|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Faecalibacterium,k__Bacteria|p__Bacillota|c__Negativicutes|o__Acidaminococcales|f__Acidaminococcaceae|g__Phascolarctobacterium,k__Bacteria|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Roseburia",2|203691|203692|136|2845253|157;2|1239|186801|186802|216572|216851;2|1239|909932|1843488|909930|33024;2|1239|186801|3085636|186803|841,Complete,NA -bsdb:1048/57/2,Study 1048,laboratory experiment,34612701,10.1128%2FSpectrum.01387-21,https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8510183/,"Poulsen CS, Kaas RS, Aarestrup FM , Pamp SJ",Standard Sample Storage Conditions Have an Impact on Inferred Microbiome Composition and Antimicrobial Resistance Patterns,Microbiology spectrum,2021,"antimicrobial resistance, bacteria, complex samples, freezing, metagenomics, microbial community composition, microbiome, mock community, parasite, sample storage, spiking, synthetic mock community",Experiment 57,Denmark,Sus scrofa domesticus,Feces,UBERON:0001988,Microbiome,EFO:0004982,Unspiked pig feces(P1) at 16 hours (-20°C),Unspiked pig feces(P1) at 16 hours (22°C),Unspiked P1 sample stored at a temperature of 22°C for 16 hours,1,1,NA,WMS,NA,Illumina,DESeq2,0.01,FALSE,NA,NA,NA,increased,NA,decreased,increased,NA,NA,Signature 2,Figure 4,3 April 2024,Bolanle,Bolanle,There was lower abundance of the taxa in frozen samples than what was detected in samples processed immediately,decreased,k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella,2|976|200643|171549|171552|838,Complete,NA -bsdb:1048/58/1,Study 1048,laboratory experiment,34612701,10.1128%2FSpectrum.01387-21,https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8510183/,"Poulsen CS, Kaas RS, Aarestrup FM , Pamp SJ",Standard Sample Storage Conditions Have an Impact on Inferred Microbiome Composition and Antimicrobial Resistance Patterns,Microbiology spectrum,2021,"antimicrobial resistance, bacteria, complex samples, freezing, metagenomics, microbial community composition, microbiome, mock community, parasite, sample storage, spiking, synthetic mock community",Experiment 58,Denmark,Sus scrofa domesticus,Feces,UBERON:0001988,Microbiome,EFO:0004982,Unspiked pig feces(P1) at 16 hours (-20°C),Unspiked pig feces(P1) at 64 hours (22°C),Unspiked P1 sample stored at a temperature of 22°C for 64 hours,1,1,NA,WMS,NA,Illumina,DESeq2,0.01,FALSE,NA,NA,NA,increased,NA,decreased,increased,NA,NA,Signature 1,Figure 4,3 April 2024,Bolanle,Bolanle,higher abundance with increasing temperature and time was detected in samples processed immediately.,increased,"k__Bacteria|p__Spirochaetota|c__Spirochaetia|o__Spirochaetales|f__Treponemataceae|g__Treponema,k__Bacteria|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Faecalibacterium,k__Bacteria|p__Bacillota|c__Negativicutes|o__Acidaminococcales|f__Acidaminococcaceae|g__Phascolarctobacterium,k__Bacteria|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Roseburia",2|203691|203692|136|2845253|157;2|1239|186801|186802|216572|216851;2|1239|909932|1843488|909930|33024;2|1239|186801|3085636|186803|841,Complete,NA -bsdb:1048/58/2,Study 1048,laboratory experiment,34612701,10.1128%2FSpectrum.01387-21,https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8510183/,"Poulsen CS, Kaas RS, Aarestrup FM , Pamp SJ",Standard Sample Storage Conditions Have an Impact on Inferred Microbiome Composition and Antimicrobial Resistance Patterns,Microbiology spectrum,2021,"antimicrobial resistance, bacteria, complex samples, freezing, metagenomics, microbial community composition, microbiome, mock community, parasite, sample storage, spiking, synthetic mock community",Experiment 58,Denmark,Sus scrofa domesticus,Feces,UBERON:0001988,Microbiome,EFO:0004982,Unspiked pig feces(P1) at 16 hours (-20°C),Unspiked pig feces(P1) at 64 hours (22°C),Unspiked P1 sample stored at a temperature of 22°C for 64 hours,1,1,NA,WMS,NA,Illumina,DESeq2,0.01,FALSE,NA,NA,NA,increased,NA,decreased,increased,NA,NA,Signature 2,Figure 4,3 April 2024,Bolanle,Bolanle,There was lower abundance of the taxa in frozen samples than what was detected in samples processed immediately,decreased,k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella,2|976|200643|171549|171552|838,Complete,NA -bsdb:1048/59/NA,Study 1048,laboratory experiment,34612701,10.1128%2FSpectrum.01387-21,https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8510183/,"Poulsen CS, Kaas RS, Aarestrup FM , Pamp SJ",Standard Sample Storage Conditions Have an Impact on Inferred Microbiome Composition and Antimicrobial Resistance Patterns,Microbiology spectrum,2021,"antimicrobial resistance, bacteria, complex samples, freezing, metagenomics, microbial community composition, microbiome, mock community, parasite, sample storage, spiking, synthetic mock community",Experiment 59,Denmark,Sus scrofa domesticus,Feces,UBERON:0001988,NA,NA,Spiked pig feces(P1) at 16 hours (5°C),Spiked pig feces(P1) at 64 hours (5°C),P1 samplespiked with a mock community and stored at a temperature of 64 hours (5°C),1,1,NA,WMS,NA,Illumina,DESeq2,0.01,FALSE,NA,NA,NA,unchanged,NA,decreased,unchanged,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA -bsdb:1048/60/NA,Study 1048,laboratory experiment,34612701,10.1128%2FSpectrum.01387-21,https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8510183/,"Poulsen CS, Kaas RS, Aarestrup FM , Pamp SJ",Standard Sample Storage Conditions Have an Impact on Inferred Microbiome Composition and Antimicrobial Resistance Patterns,Microbiology spectrum,2021,"antimicrobial resistance, bacteria, complex samples, freezing, metagenomics, microbial community composition, microbiome, mock community, parasite, sample storage, spiking, synthetic mock community",Experiment 60,Denmark,Sus scrofa domesticus,Feces,UBERON:0001988,NA,NA,Spiked pig feces(P1) at 16 hours (5°C),Spiked pig feces(P1) at 16 hours (22°C),P1 sample spiked with a mock community and stored at a temperature of 16 hours (22°C),1,1,NA,WMS,NA,Illumina,DESeq2,0.01,FALSE,NA,NA,NA,unchanged,NA,decreased,unchanged,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA -bsdb:1048/61/NA,Study 1048,laboratory experiment,34612701,10.1128%2FSpectrum.01387-21,https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8510183/,"Poulsen CS, Kaas RS, Aarestrup FM , Pamp SJ",Standard Sample Storage Conditions Have an Impact on Inferred Microbiome Composition and Antimicrobial Resistance Patterns,Microbiology spectrum,2021,"antimicrobial resistance, bacteria, complex samples, freezing, metagenomics, microbial community composition, microbiome, mock community, parasite, sample storage, spiking, synthetic mock community",Experiment 61,Denmark,Sus scrofa domesticus,Feces,UBERON:0001988,NA,NA,Spiked pig feces(P1) at 64 hours (5°C),Spiked pig feces(P1) at 16 hours (22°C),P1 sample spiked with a mock community and stored at a temperature of 16 hours (22°C),1,1,NA,WMS,NA,Illumina,DESeq2,0.01,FALSE,NA,NA,NA,unchanged,NA,decreased,unchanged,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA -bsdb:1048/62/1,Study 1048,laboratory experiment,34612701,10.1128%2FSpectrum.01387-21,https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8510183/,"Poulsen CS, Kaas RS, Aarestrup FM , Pamp SJ",Standard Sample Storage Conditions Have an Impact on Inferred Microbiome Composition and Antimicrobial Resistance Patterns,Microbiology spectrum,2021,"antimicrobial resistance, bacteria, complex samples, freezing, metagenomics, microbial community composition, microbiome, mock community, parasite, sample storage, spiking, synthetic mock community",Experiment 62,Denmark,Sus scrofa domesticus,Feces,UBERON:0001988,Microbiome,EFO:0004982,Unspiked pig feces(P1) at 64 hours (-20°C),Unspiked pig feces(P1) at 16 hours (5°C),Unspiked P1 sample stored at a temperature of 5°C for 16 hours,1,1,NA,WMS,NA,Illumina,DESeq2,0.01,FALSE,NA,NA,NA,increased,NA,increased,increased,NA,NA,Signature 1,Figure 4,3 April 2024,Bolanle,Bolanle,higher abundance with increasing temperature and time was detected in samples processed immediately.,increased,"k__Bacteria|p__Spirochaetota|c__Spirochaetia|o__Spirochaetales|f__Treponemataceae|g__Treponema,k__Bacteria|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Faecalibacterium",2|203691|203692|136|2845253|157;2|1239|186801|186802|216572|216851,Complete,NA -bsdb:1048/62/2,Study 1048,laboratory experiment,34612701,10.1128%2FSpectrum.01387-21,https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8510183/,"Poulsen CS, Kaas RS, Aarestrup FM , Pamp SJ",Standard Sample Storage Conditions Have an Impact on Inferred Microbiome Composition and Antimicrobial Resistance Patterns,Microbiology spectrum,2021,"antimicrobial resistance, bacteria, complex samples, freezing, metagenomics, microbial community composition, microbiome, mock community, parasite, sample storage, spiking, synthetic mock community",Experiment 62,Denmark,Sus scrofa domesticus,Feces,UBERON:0001988,Microbiome,EFO:0004982,Unspiked pig feces(P1) at 64 hours (-20°C),Unspiked pig feces(P1) at 16 hours (5°C),Unspiked P1 sample stored at a temperature of 5°C for 16 hours,1,1,NA,WMS,NA,Illumina,DESeq2,0.01,FALSE,NA,NA,NA,increased,NA,increased,increased,NA,NA,Signature 2,Figure 4,3 April 2024,Bolanle,Bolanle,There was lower abundance of the taxa in frozen samples than what was detected in samples processed immediately,decreased,"k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella,k__Bacteria|p__Bacillota|c__Negativicutes|o__Acidaminococcales|f__Acidaminococcaceae|g__Phascolarctobacterium,k__Bacteria|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Roseburia",2|976|200643|171549|171552|838;2|1239|909932|1843488|909930|33024;2|1239|186801|3085636|186803|841,Complete,NA -bsdb:1048/63/NA,Study 1048,laboratory experiment,34612701,10.1128%2FSpectrum.01387-21,https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8510183/,"Poulsen CS, Kaas RS, Aarestrup FM , Pamp SJ",Standard Sample Storage Conditions Have an Impact on Inferred Microbiome Composition and Antimicrobial Resistance Patterns,Microbiology spectrum,2021,"antimicrobial resistance, bacteria, complex samples, freezing, metagenomics, microbial community composition, microbiome, mock community, parasite, sample storage, spiking, synthetic mock community",Experiment 63,Denmark,Sus scrofa domesticus,Feces,UBERON:0001988,NA,NA,Spiked pig feces(P1) at 16 hours (22°C),Spiked pig feces(P1) at 64 hours (22°C),P1 sample spiked with a mock community and stored at a temperature of 64 hours (22°C),1,1,NA,WMS,NA,Illumina,DESeq2,0.01,FALSE,NA,NA,NA,increased,NA,decreased,increased,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA -bsdb:1048/64/1,Study 1048,laboratory experiment,34612701,10.1128%2FSpectrum.01387-21,https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8510183/,"Poulsen CS, Kaas RS, Aarestrup FM , Pamp SJ",Standard Sample Storage Conditions Have an Impact on Inferred Microbiome Composition and Antimicrobial Resistance Patterns,Microbiology spectrum,2021,"antimicrobial resistance, bacteria, complex samples, freezing, metagenomics, microbial community composition, microbiome, mock community, parasite, sample storage, spiking, synthetic mock community",Experiment 64,Denmark,Sus scrofa domesticus,Feces,UBERON:0001988,Microbiome,EFO:0004982,Unspiked pig feces(P1) at 64 hours (-20°C),Unspiked pig feces(P1) at 64 hours (5°C),Unspiked P1 sample stored at a temperature of 5°C for 64 hours,1,1,NA,WMS,NA,Illumina,DESeq2,0.01,FALSE,NA,NA,NA,increased,NA,unchanged,increased,NA,NA,Signature 1,Figure 4,3 April 2024,Bolanle,Bolanle,higher abundance with increasing temperature and time was detected in samples processed immediately.,increased,"k__Bacteria|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Faecalibacterium,k__Bacteria|p__Bacillota|c__Negativicutes|o__Acidaminococcales|f__Acidaminococcaceae|g__Phascolarctobacterium,k__Bacteria|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Roseburia",2|1239|186801|186802|216572|216851;2|1239|909932|1843488|909930|33024;2|1239|186801|3085636|186803|841,Complete,NA -bsdb:1048/64/2,Study 1048,laboratory experiment,34612701,10.1128%2FSpectrum.01387-21,https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8510183/,"Poulsen CS, Kaas RS, Aarestrup FM , Pamp SJ",Standard Sample Storage Conditions Have an Impact on Inferred Microbiome Composition and Antimicrobial Resistance Patterns,Microbiology spectrum,2021,"antimicrobial resistance, bacteria, complex samples, freezing, metagenomics, microbial community composition, microbiome, mock community, parasite, sample storage, spiking, synthetic mock community",Experiment 64,Denmark,Sus scrofa domesticus,Feces,UBERON:0001988,Microbiome,EFO:0004982,Unspiked pig feces(P1) at 64 hours (-20°C),Unspiked pig feces(P1) at 64 hours (5°C),Unspiked P1 sample stored at a temperature of 5°C for 64 hours,1,1,NA,WMS,NA,Illumina,DESeq2,0.01,FALSE,NA,NA,NA,increased,NA,unchanged,increased,NA,NA,Signature 2,Figure 4,3 April 2024,Bolanle,Bolanle,There was lower abundance of the taxa in frozen samples than what was detected in samples processed immediately,decreased,"k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella,k__Bacteria|p__Spirochaetota|c__Spirochaetia|o__Spirochaetales|f__Treponemataceae|g__Treponema",2|976|200643|171549|171552|838;2|203691|203692|136|2845253|157,Complete,NA -bsdb:1048/65/1,Study 1048,laboratory experiment,34612701,10.1128%2FSpectrum.01387-21,https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8510183/,"Poulsen CS, Kaas RS, Aarestrup FM , Pamp SJ",Standard Sample Storage Conditions Have an Impact on Inferred Microbiome Composition and Antimicrobial Resistance Patterns,Microbiology spectrum,2021,"antimicrobial resistance, bacteria, complex samples, freezing, metagenomics, microbial community composition, microbiome, mock community, parasite, sample storage, spiking, synthetic mock community",Experiment 65,Denmark,Sus scrofa domesticus,Feces,UBERON:0001988,Microbiome,EFO:0004982,Unspiked pig feces(P1) at 64 hours (-20°C),Unspiked pig feces(P1) at 16 hours (22°C),Unspiked P1 sample stored at a temperature of 22°C for 16 hours,1,1,NA,WMS,NA,Illumina,DESeq2,0.01,FALSE,NA,NA,NA,increased,NA,unchanged,increased,NA,NA,Signature 1,Figure 4,3 April 2024,Bolanle,Bolanle,higher abundance with increasing temperature and time was detected in samples processed immediately.,increased,"k__Bacteria|p__Spirochaetota|c__Spirochaetia|o__Spirochaetales|f__Treponemataceae|g__Treponema,k__Bacteria|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Faecalibacterium,k__Bacteria|p__Bacillota|c__Negativicutes|o__Acidaminococcales|f__Acidaminococcaceae|g__Phascolarctobacterium,k__Bacteria|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Roseburia",2|203691|203692|136|2845253|157;2|1239|186801|186802|216572|216851;2|1239|909932|1843488|909930|33024;2|1239|186801|3085636|186803|841,Complete,NA -bsdb:1048/65/2,Study 1048,laboratory experiment,34612701,10.1128%2FSpectrum.01387-21,https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8510183/,"Poulsen CS, Kaas RS, Aarestrup FM , Pamp SJ",Standard Sample Storage Conditions Have an Impact on Inferred Microbiome Composition and Antimicrobial Resistance Patterns,Microbiology spectrum,2021,"antimicrobial resistance, bacteria, complex samples, freezing, metagenomics, microbial community composition, microbiome, mock community, parasite, sample storage, spiking, synthetic mock community",Experiment 65,Denmark,Sus scrofa domesticus,Feces,UBERON:0001988,Microbiome,EFO:0004982,Unspiked pig feces(P1) at 64 hours (-20°C),Unspiked pig feces(P1) at 16 hours (22°C),Unspiked P1 sample stored at a temperature of 22°C for 16 hours,1,1,NA,WMS,NA,Illumina,DESeq2,0.01,FALSE,NA,NA,NA,increased,NA,unchanged,increased,NA,NA,Signature 2,Figure 4,3 April 2024,Bolanle,Bolanle,There was lower abundance of the taxa in frozen samples than what was detected in samples processed immediately,decreased,k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella,2|976|200643|171549|171552|838,Complete,NA -bsdb:1048/66/1,Study 1048,laboratory experiment,34612701,10.1128%2FSpectrum.01387-21,https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8510183/,"Poulsen CS, Kaas RS, Aarestrup FM , Pamp SJ",Standard Sample Storage Conditions Have an Impact on Inferred Microbiome Composition and Antimicrobial Resistance Patterns,Microbiology spectrum,2021,"antimicrobial resistance, bacteria, complex samples, freezing, metagenomics, microbial community composition, microbiome, mock community, parasite, sample storage, spiking, synthetic mock community",Experiment 66,Denmark,Sus scrofa domesticus,Feces,UBERON:0001988,Microbiome,EFO:0004982,Unspiked pig feces(P1) at 64 hours (-20°C),Unspiked pig feces(P1) at 64 hours (22°C),Unspiked P1 sample stored at a temperature of 22°C for 64 hours,1,1,NA,WMS,NA,Illumina,DESeq2,0.01,FALSE,NA,NA,NA,increased,NA,increased,increased,NA,NA,Signature 1,Figure 4,3 April 2024,Bolanle,Bolanle,higher abundance with increasing temperature and time was detected in samples processed immediately,increased,"k__Bacteria|p__Spirochaetota|c__Spirochaetia|o__Spirochaetales|f__Treponemataceae|g__Treponema,k__Bacteria|p__Bacillota|c__Negativicutes|o__Acidaminococcales|f__Acidaminococcaceae|g__Phascolarctobacterium,k__Bacteria|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Faecalibacterium,k__Bacteria|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Roseburia",2|203691|203692|136|2845253|157;2|1239|909932|1843488|909930|33024;2|1239|186801|186802|216572|216851;2|1239|186801|3085636|186803|841,Complete,NA -bsdb:1048/66/2,Study 1048,laboratory experiment,34612701,10.1128%2FSpectrum.01387-21,https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8510183/,"Poulsen CS, Kaas RS, Aarestrup FM , Pamp SJ",Standard Sample Storage Conditions Have an Impact on Inferred Microbiome Composition and Antimicrobial Resistance Patterns,Microbiology spectrum,2021,"antimicrobial resistance, bacteria, complex samples, freezing, metagenomics, microbial community composition, microbiome, mock community, parasite, sample storage, spiking, synthetic mock community",Experiment 66,Denmark,Sus scrofa domesticus,Feces,UBERON:0001988,Microbiome,EFO:0004982,Unspiked pig feces(P1) at 64 hours (-20°C),Unspiked pig feces(P1) at 64 hours (22°C),Unspiked P1 sample stored at a temperature of 22°C for 64 hours,1,1,NA,WMS,NA,Illumina,DESeq2,0.01,FALSE,NA,NA,NA,increased,NA,increased,increased,NA,NA,Signature 2,Figure 4,3 April 2024,Bolanle,Bolanle,There was lower abundance of the taxa in frozen samples than what was detected in samples processed immediately,decreased,k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella,2|976|200643|171549|171552|838,Complete,NA -bsdb:1048/67/1,Study 1048,laboratory experiment,34612701,10.1128%2FSpectrum.01387-21,https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8510183/,"Poulsen CS, Kaas RS, Aarestrup FM , Pamp SJ",Standard Sample Storage Conditions Have an Impact on Inferred Microbiome Composition and Antimicrobial Resistance Patterns,Microbiology spectrum,2021,"antimicrobial resistance, bacteria, complex samples, freezing, metagenomics, microbial community composition, microbiome, mock community, parasite, sample storage, spiking, synthetic mock community",Experiment 67,Denmark,Sus scrofa domesticus,Feces,UBERON:0001988,Microbiome,EFO:0004982,Unspiked pig feces(P1) at 16 hours (5°C),Unspiked pig feces(P1) at 64 hours (5°C),Unspiked P1 sample stored at a temperature of 5°C for 64 hours,1,1,NA,WMS,NA,Illumina,DESeq2,0.01,FALSE,NA,NA,NA,increased,NA,decreased,increased,NA,NA,Signature 1,Figure 4,3 April 2024,Bolanle,Bolanle,higher abundance with increasing temperature and time was detected in samples processed immediately,increased,"k__Bacteria|p__Spirochaetota|c__Spirochaetia|o__Spirochaetales|f__Treponemataceae|g__Treponema,k__Bacteria|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Faecalibacterium,k__Bacteria|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Roseburia",2|203691|203692|136|2845253|157;2|1239|186801|186802|216572|216851;2|1239|186801|3085636|186803|841,Complete,NA -bsdb:1048/67/2,Study 1048,laboratory experiment,34612701,10.1128%2FSpectrum.01387-21,https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8510183/,"Poulsen CS, Kaas RS, Aarestrup FM , Pamp SJ",Standard Sample Storage Conditions Have an Impact on Inferred Microbiome Composition and Antimicrobial Resistance Patterns,Microbiology spectrum,2021,"antimicrobial resistance, bacteria, complex samples, freezing, metagenomics, microbial community composition, microbiome, mock community, parasite, sample storage, spiking, synthetic mock community",Experiment 67,Denmark,Sus scrofa domesticus,Feces,UBERON:0001988,Microbiome,EFO:0004982,Unspiked pig feces(P1) at 16 hours (5°C),Unspiked pig feces(P1) at 64 hours (5°C),Unspiked P1 sample stored at a temperature of 5°C for 64 hours,1,1,NA,WMS,NA,Illumina,DESeq2,0.01,FALSE,NA,NA,NA,increased,NA,decreased,increased,NA,NA,Signature 2,Figure 4,3 April 2024,Bolanle,Bolanle,There was lower abundance of the taxa in frozen samples than what was detected in samples processed immediately,decreased,"k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella,k__Bacteria|p__Bacillota|c__Negativicutes|o__Acidaminococcales|f__Acidaminococcaceae|g__Phascolarctobacterium",2|976|200643|171549|171552|838;2|1239|909932|1843488|909930|33024,Complete,NA -bsdb:1048/68/1,Study 1048,laboratory experiment,34612701,10.1128%2FSpectrum.01387-21,https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8510183/,"Poulsen CS, Kaas RS, Aarestrup FM , Pamp SJ",Standard Sample Storage Conditions Have an Impact on Inferred Microbiome Composition and Antimicrobial Resistance Patterns,Microbiology spectrum,2021,"antimicrobial resistance, bacteria, complex samples, freezing, metagenomics, microbial community composition, microbiome, mock community, parasite, sample storage, spiking, synthetic mock community",Experiment 68,Denmark,Sus scrofa domesticus,Feces,UBERON:0001988,Microbiome,EFO:0004982,Unspiked pig feces(P1) at 16 hours (5°C),Unspiked pig feces(P1) at 16 hours (22°C),Unspiked P1 sample stored at a temperature of 22°C for 16 hours,1,1,NA,WMS,NA,Illumina,DESeq2,0.01,FALSE,NA,NA,NA,increased,NA,decreased,increased,NA,NA,Signature 1,Figure 4,3 April 2024,Bolanle,Bolanle,higher abundance with increasing temperature and time was detected in samples processed immediately,increased,"k__Bacteria|p__Spirochaetota|c__Spirochaetia|o__Spirochaetales|f__Treponemataceae|g__Treponema,k__Bacteria|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Faecalibacterium,k__Bacteria|p__Bacillota|c__Negativicutes|o__Acidaminococcales|f__Acidaminococcaceae|g__Phascolarctobacterium,k__Bacteria|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Roseburia",2|203691|203692|136|2845253|157;2|1239|186801|186802|216572|216851;2|1239|909932|1843488|909930|33024;2|1239|186801|3085636|186803|841,Complete,NA -bsdb:1048/68/2,Study 1048,laboratory experiment,34612701,10.1128%2FSpectrum.01387-21,https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8510183/,"Poulsen CS, Kaas RS, Aarestrup FM , Pamp SJ",Standard Sample Storage Conditions Have an Impact on Inferred Microbiome Composition and Antimicrobial Resistance Patterns,Microbiology spectrum,2021,"antimicrobial resistance, bacteria, complex samples, freezing, metagenomics, microbial community composition, microbiome, mock community, parasite, sample storage, spiking, synthetic mock community",Experiment 68,Denmark,Sus scrofa domesticus,Feces,UBERON:0001988,Microbiome,EFO:0004982,Unspiked pig feces(P1) at 16 hours (5°C),Unspiked pig feces(P1) at 16 hours (22°C),Unspiked P1 sample stored at a temperature of 22°C for 16 hours,1,1,NA,WMS,NA,Illumina,DESeq2,0.01,FALSE,NA,NA,NA,increased,NA,decreased,increased,NA,NA,Signature 2,Figure 4,3 April 2024,Bolanle,Bolanle,There was lower abundance of the taxa in frozen samples than what was detected in samples processed immediately,decreased,k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella,2|976|200643|171549|171552|838,Complete,NA -bsdb:1048/69/1,Study 1048,laboratory experiment,34612701,10.1128%2FSpectrum.01387-21,https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8510183/,"Poulsen CS, Kaas RS, Aarestrup FM , Pamp SJ",Standard Sample Storage Conditions Have an Impact on Inferred Microbiome Composition and Antimicrobial Resistance Patterns,Microbiology spectrum,2021,"antimicrobial resistance, bacteria, complex samples, freezing, metagenomics, microbial community composition, microbiome, mock community, parasite, sample storage, spiking, synthetic mock community",Experiment 69,Denmark,Sus scrofa domesticus,Feces,UBERON:0001988,Microbiome,EFO:0004982,Unspiked pig feces(P1) at 16 hours (5°C),Unspiked pig feces(P1) at 64 hours (22°C),Unspiked P1 sample stored at a temperature of 22°C for 64 hours,1,1,NA,WMS,NA,Illumina,DESeq2,0.01,FALSE,NA,NA,NA,increased,NA,unchanged,increased,NA,NA,Signature 1,Figure 4,3 April 2024,Bolanle,Bolanle,higher abundance with increasing temperature and time was detected in samples processed immediately,increased,"k__Bacteria|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Faecalibacterium,k__Bacteria|p__Bacillota|c__Negativicutes|o__Acidaminococcales|f__Acidaminococcaceae|g__Phascolarctobacterium,k__Bacteria|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Roseburia",2|1239|186801|186802|216572|216851;2|1239|909932|1843488|909930|33024;2|1239|186801|3085636|186803|841,Complete,NA -bsdb:1048/69/2,Study 1048,laboratory experiment,34612701,10.1128%2FSpectrum.01387-21,https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8510183/,"Poulsen CS, Kaas RS, Aarestrup FM , Pamp SJ",Standard Sample Storage Conditions Have an Impact on Inferred Microbiome Composition and Antimicrobial Resistance Patterns,Microbiology spectrum,2021,"antimicrobial resistance, bacteria, complex samples, freezing, metagenomics, microbial community composition, microbiome, mock community, parasite, sample storage, spiking, synthetic mock community",Experiment 69,Denmark,Sus scrofa domesticus,Feces,UBERON:0001988,Microbiome,EFO:0004982,Unspiked pig feces(P1) at 16 hours (5°C),Unspiked pig feces(P1) at 64 hours (22°C),Unspiked P1 sample stored at a temperature of 22°C for 64 hours,1,1,NA,WMS,NA,Illumina,DESeq2,0.01,FALSE,NA,NA,NA,increased,NA,unchanged,increased,NA,NA,Signature 2,Figure 4,3 April 2024,Bolanle,Bolanle,There was lower abundance of the taxa in frozen samples than what was detected in samples processed immediately,decreased,"k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella,k__Bacteria|p__Spirochaetota|c__Spirochaetia|o__Spirochaetales|f__Treponemataceae|g__Treponema",2|976|200643|171549|171552|838;2|203691|203692|136|2845253|157,Complete,NA -bsdb:1048/70/1,Study 1048,laboratory experiment,34612701,10.1128%2FSpectrum.01387-21,https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8510183/,"Poulsen CS, Kaas RS, Aarestrup FM , Pamp SJ",Standard Sample Storage Conditions Have an Impact on Inferred Microbiome Composition and Antimicrobial Resistance Patterns,Microbiology spectrum,2021,"antimicrobial resistance, bacteria, complex samples, freezing, metagenomics, microbial community composition, microbiome, mock community, parasite, sample storage, spiking, synthetic mock community",Experiment 70,Denmark,Sus scrofa domesticus,Feces,UBERON:0001988,Microbiome,EFO:0004982,Unspiked pig feces(P1) at 64 hours (5°C),Unspiked pig feces(P1) at 16 hours (22°C),Unspiked P1 sample stored at a temperature of 22°C for 16 hours,1,1,NA,WMS,NA,Illumina,DESeq2,0.01,FALSE,NA,NA,NA,increased,NA,unchanged,increased,NA,NA,Signature 1,Figure 4,3 April 2024,Bolanle,Bolanle,higher abundance with increasing temperature and time was detected in samples processed immediately,increased,"k__Bacteria|p__Spirochaetota|c__Spirochaetia|o__Spirochaetales|f__Treponemataceae|g__Treponema,k__Bacteria|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Faecalibacterium",2|203691|203692|136|2845253|157;2|1239|186801|186802|216572|216851,Complete,NA -bsdb:1048/70/2,Study 1048,laboratory experiment,34612701,10.1128%2FSpectrum.01387-21,https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8510183/,"Poulsen CS, Kaas RS, Aarestrup FM , Pamp SJ",Standard Sample Storage Conditions Have an Impact on Inferred Microbiome Composition and Antimicrobial Resistance Patterns,Microbiology spectrum,2021,"antimicrobial resistance, bacteria, complex samples, freezing, metagenomics, microbial community composition, microbiome, mock community, parasite, sample storage, spiking, synthetic mock community",Experiment 70,Denmark,Sus scrofa domesticus,Feces,UBERON:0001988,Microbiome,EFO:0004982,Unspiked pig feces(P1) at 64 hours (5°C),Unspiked pig feces(P1) at 16 hours (22°C),Unspiked P1 sample stored at a temperature of 22°C for 16 hours,1,1,NA,WMS,NA,Illumina,DESeq2,0.01,FALSE,NA,NA,NA,increased,NA,unchanged,increased,NA,NA,Signature 2,Figure 4,3 April 2024,Bolanle,Bolanle,There was lower abundance of the taxa in frozen samples than what was detected in samples processed immediately,decreased,"k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella,k__Bacteria|p__Bacillota|c__Negativicutes|o__Acidaminococcales|f__Acidaminococcaceae|g__Phascolarctobacterium,k__Bacteria|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Roseburia",2|976|200643|171549|171552|838;2|1239|909932|1843488|909930|33024;2|1239|186801|3085636|186803|841,Complete,NA -bsdb:1048/71/1,Study 1048,laboratory experiment,34612701,10.1128%2FSpectrum.01387-21,https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8510183/,"Poulsen CS, Kaas RS, Aarestrup FM , Pamp SJ",Standard Sample Storage Conditions Have an Impact on Inferred Microbiome Composition and Antimicrobial Resistance Patterns,Microbiology spectrum,2021,"antimicrobial resistance, bacteria, complex samples, freezing, metagenomics, microbial community composition, microbiome, mock community, parasite, sample storage, spiking, synthetic mock community",Experiment 71,Denmark,Sus scrofa domesticus,Feces,UBERON:0001988,Microbiome,EFO:0004982,Unspiked pig feces(P1) at 64 hours (5°C),Unspiked pig feces(P1) at 64 hours (22°C),Unspiked P1 sample stored at a temperature of 22°C for 64 hours,1,1,NA,WMS,NA,Illumina,DESeq2,0.01,FALSE,NA,NA,NA,increased,NA,increased,increased,NA,NA,Signature 1,Figure 4,3 April 2024,Bolanle,Bolanle,higher abundance with increasing temperature and time was detected in samples processed immediately,increased,"k__Bacteria|p__Spirochaetota|c__Spirochaetia|o__Spirochaetales|f__Treponemataceae|g__Treponema,k__Bacteria|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Faecalibacterium",2|203691|203692|136|2845253|157;2|1239|186801|186802|216572|216851,Complete,NA -bsdb:1048/71/2,Study 1048,laboratory experiment,34612701,10.1128%2FSpectrum.01387-21,https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8510183/,"Poulsen CS, Kaas RS, Aarestrup FM , Pamp SJ",Standard Sample Storage Conditions Have an Impact on Inferred Microbiome Composition and Antimicrobial Resistance Patterns,Microbiology spectrum,2021,"antimicrobial resistance, bacteria, complex samples, freezing, metagenomics, microbial community composition, microbiome, mock community, parasite, sample storage, spiking, synthetic mock community",Experiment 71,Denmark,Sus scrofa domesticus,Feces,UBERON:0001988,Microbiome,EFO:0004982,Unspiked pig feces(P1) at 64 hours (5°C),Unspiked pig feces(P1) at 64 hours (22°C),Unspiked P1 sample stored at a temperature of 22°C for 64 hours,1,1,NA,WMS,NA,Illumina,DESeq2,0.01,FALSE,NA,NA,NA,increased,NA,increased,increased,NA,NA,Signature 2,Figure 4,3 April 2024,Bolanle,Bolanle,There was lower abundance of the taxa in frozen samples than what was detected in samples processed immediately,decreased,"k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella,k__Bacteria|p__Bacillota|c__Negativicutes|o__Acidaminococcales|f__Acidaminococcaceae|g__Phascolarctobacterium,k__Bacteria|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Roseburia",2|976|200643|171549|171552|838;2|1239|909932|1843488|909930|33024;2|1239|186801|3085636|186803|841,Complete,NA -bsdb:1048/72/1,Study 1048,laboratory experiment,34612701,10.1128%2FSpectrum.01387-21,https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8510183/,"Poulsen CS, Kaas RS, Aarestrup FM , Pamp SJ",Standard Sample Storage Conditions Have an Impact on Inferred Microbiome Composition and Antimicrobial Resistance Patterns,Microbiology spectrum,2021,"antimicrobial resistance, bacteria, complex samples, freezing, metagenomics, microbial community composition, microbiome, mock community, parasite, sample storage, spiking, synthetic mock community",Experiment 72,Denmark,Sus scrofa domesticus,Feces,UBERON:0001988,Microbiome,EFO:0004982,Unspiked pig feces(P1) at 16 hours (22°C),Unspiked pig feces(P1) at 64 hours (22°C),Unspiked P1 sample stored at a temperature of 22°C for 64 hours,1,1,NA,WMS,NA,Illumina,DESeq2,0.01,FALSE,NA,NA,NA,increased,NA,increased,increased,NA,NA,Signature 1,Figure 4,3 April 2024,Bolanle,Bolanle,higher abundance with increasing temperature and time was detected in samples processed immediately,increased,"k__Bacteria|p__Spirochaetota|c__Spirochaetia|o__Spirochaetales|f__Treponemataceae|g__Treponema,k__Bacteria|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Faecalibacterium",2|203691|203692|136|2845253|157;2|1239|186801|186802|216572|216851,Complete,NA -bsdb:1048/72/2,Study 1048,laboratory experiment,34612701,10.1128%2FSpectrum.01387-21,https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8510183/,"Poulsen CS, Kaas RS, Aarestrup FM , Pamp SJ",Standard Sample Storage Conditions Have an Impact on Inferred Microbiome Composition and Antimicrobial Resistance Patterns,Microbiology spectrum,2021,"antimicrobial resistance, bacteria, complex samples, freezing, metagenomics, microbial community composition, microbiome, mock community, parasite, sample storage, spiking, synthetic mock community",Experiment 72,Denmark,Sus scrofa domesticus,Feces,UBERON:0001988,Microbiome,EFO:0004982,Unspiked pig feces(P1) at 16 hours (22°C),Unspiked pig feces(P1) at 64 hours (22°C),Unspiked P1 sample stored at a temperature of 22°C for 64 hours,1,1,NA,WMS,NA,Illumina,DESeq2,0.01,FALSE,NA,NA,NA,increased,NA,increased,increased,NA,NA,Signature 2,Figure 4,3 April 2024,Bolanle,Bolanle,There was lower abundance of the taxa in frozen samples than what was detected in samples processed immediately,decreased,"k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella,k__Bacteria|p__Bacillota|c__Negativicutes|o__Acidaminococcales|f__Acidaminococcaceae|g__Phascolarctobacterium,k__Bacteria|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Roseburia",2|976|200643|171549|171552|838;2|1239|909932|1843488|909930|33024;2|1239|186801|3085636|186803|841,Complete,NA -bsdb:1048/73/NA,Study 1048,laboratory experiment,34612701,10.1128%2FSpectrum.01387-21,https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8510183/,"Poulsen CS, Kaas RS, Aarestrup FM , Pamp SJ",Standard Sample Storage Conditions Have an Impact on Inferred Microbiome Composition and Antimicrobial Resistance Patterns,Microbiology spectrum,2021,"antimicrobial resistance, bacteria, complex samples, freezing, metagenomics, microbial community composition, microbiome, mock community, parasite, sample storage, spiking, synthetic mock community",Experiment 73,Denmark,Sus scrofa domesticus,Feces,UBERON:0001988,NA,NA,Spiked pig feces(P2) at 0 hour,Spiked pig feces(P2) at 64 hours (-80°C),P2 sample spiked with a mock community and stored at a temperature of -80°C for 64 hours,1,1,NA,WMS,NA,Illumina,DESeq2,0.01,FALSE,NA,NA,NA,decreased,NA,increased,decreased,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA -bsdb:1048/74/NA,Study 1048,laboratory experiment,34612701,10.1128%2FSpectrum.01387-21,https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8510183/,"Poulsen CS, Kaas RS, Aarestrup FM , Pamp SJ",Standard Sample Storage Conditions Have an Impact on Inferred Microbiome Composition and Antimicrobial Resistance Patterns,Microbiology spectrum,2021,"antimicrobial resistance, bacteria, complex samples, freezing, metagenomics, microbial community composition, microbiome, mock community, parasite, sample storage, spiking, synthetic mock community",Experiment 74,Denmark,Sus scrofa domesticus,Feces,UBERON:0001988,NA,NA,Spiked pig feces(P2) at 0 hour,Spiked pig feces(P2) at 64 hours (22°C),P2 sample spiked with a mock community and stored at a temperature of 22°C for 64 hours,1,1,NA,WMS,NA,Illumina,DESeq2,0.01,FALSE,NA,NA,NA,increased,NA,decreased,increased,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA -bsdb:1048/75/NA,Study 1048,laboratory experiment,34612701,10.1128%2FSpectrum.01387-21,https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8510183/,"Poulsen CS, Kaas RS, Aarestrup FM , Pamp SJ",Standard Sample Storage Conditions Have an Impact on Inferred Microbiome Composition and Antimicrobial Resistance Patterns,Microbiology spectrum,2021,"antimicrobial resistance, bacteria, complex samples, freezing, metagenomics, microbial community composition, microbiome, mock community, parasite, sample storage, spiking, synthetic mock community",Experiment 75,Denmark,Sus scrofa domesticus,Feces,UBERON:0001988,NA,NA,Spiked pig feces(P2) at 0 hour,Spiked pig feces(P2) at 64 hours (5°C),P2 sample spiked with a mock community and stored at a temperature of 5°C for 64 hours,1,1,NA,WMS,NA,Illumina,DESeq2,0.01,FALSE,NA,NA,NA,increased,NA,decreased,increased,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA -bsdb:1048/76/NA,Study 1048,laboratory experiment,34612701,10.1128%2FSpectrum.01387-21,https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8510183/,"Poulsen CS, Kaas RS, Aarestrup FM , Pamp SJ",Standard Sample Storage Conditions Have an Impact on Inferred Microbiome Composition and Antimicrobial Resistance Patterns,Microbiology spectrum,2021,"antimicrobial resistance, bacteria, complex samples, freezing, metagenomics, microbial community composition, microbiome, mock community, parasite, sample storage, spiking, synthetic mock community",Experiment 76,Denmark,Sus scrofa domesticus,Feces,UBERON:0001988,NA,NA,Spiked pig feces(P2) at 0 hour,Spiked pig feces(P2) at 64 hours (-20°C),P2 sample spiked with a mock community and stored at a temperature of -20°C for 64 hours,1,1,NA,WMS,NA,Illumina,DESeq2,0.01,FALSE,NA,NA,NA,decreased,NA,increased,decreased,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA -bsdb:1048/77/NA,Study 1048,laboratory experiment,34612701,10.1128%2FSpectrum.01387-21,https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8510183/,"Poulsen CS, Kaas RS, Aarestrup FM , Pamp SJ",Standard Sample Storage Conditions Have an Impact on Inferred Microbiome Composition and Antimicrobial Resistance Patterns,Microbiology spectrum,2021,"antimicrobial resistance, bacteria, complex samples, freezing, metagenomics, microbial community composition, microbiome, mock community, parasite, sample storage, spiking, synthetic mock community",Experiment 77,Denmark,Sus scrofa domesticus,Feces,UBERON:0001988,NA,NA,Spiked pig feces(P2) at 0 hour,Spiked pig feces(P2) at 16 hours (-80°C),P2 sample spiked with a mock community and stored at a temperature of -80°C for 16 hours,1,1,NA,WMS,NA,Illumina,DESeq2,0.01,FALSE,NA,NA,NA,decreased,NA,decreased,decreased,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA -bsdb:1048/78/NA,Study 1048,laboratory experiment,34612701,10.1128%2FSpectrum.01387-21,https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8510183/,"Poulsen CS, Kaas RS, Aarestrup FM , Pamp SJ",Standard Sample Storage Conditions Have an Impact on Inferred Microbiome Composition and Antimicrobial Resistance Patterns,Microbiology spectrum,2021,"antimicrobial resistance, bacteria, complex samples, freezing, metagenomics, microbial community composition, microbiome, mock community, parasite, sample storage, spiking, synthetic mock community",Experiment 78,Denmark,Sus scrofa domesticus,Feces,UBERON:0001988,NA,NA,Spiked pig feces(P2) at 0 hour,Spiked pig feces(P2) at 16 hours (5°C),P2 sample spiked with a mock community and stored at a temperature of 5°C for 16 hours,1,1,NA,WMS,NA,Illumina,DESeq2,0.01,FALSE,NA,NA,NA,unchanged,NA,decreased,unchanged,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA -bsdb:1048/79/NA,Study 1048,laboratory experiment,34612701,10.1128%2FSpectrum.01387-21,https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8510183/,"Poulsen CS, Kaas RS, Aarestrup FM , Pamp SJ",Standard Sample Storage Conditions Have an Impact on Inferred Microbiome Composition and Antimicrobial Resistance Patterns,Microbiology spectrum,2021,"antimicrobial resistance, bacteria, complex samples, freezing, metagenomics, microbial community composition, microbiome, mock community, parasite, sample storage, spiking, synthetic mock community",Experiment 79,Denmark,Sus scrofa domesticus,Feces,UBERON:0001988,NA,NA,Spiked pig feces(P2) at 0 hour,Spiked pig feces(P2) at 16 hours (22°C),P2 sample spiked with a mock community and stored at a temperature of 22°C for 16 hours,1,1,NA,WMS,NA,Illumina,DESeq2,0.01,FALSE,NA,NA,NA,increased,NA,decreased,increased,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA -bsdb:1048/80/NA,Study 1048,laboratory experiment,34612701,10.1128%2FSpectrum.01387-21,https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8510183/,"Poulsen CS, Kaas RS, Aarestrup FM , Pamp SJ",Standard Sample Storage Conditions Have an Impact on Inferred Microbiome Composition and Antimicrobial Resistance Patterns,Microbiology spectrum,2021,"antimicrobial resistance, bacteria, complex samples, freezing, metagenomics, microbial community composition, microbiome, mock community, parasite, sample storage, spiking, synthetic mock community",Experiment 80,Denmark,Sus scrofa domesticus,Feces,UBERON:0001988,NA,NA,Spiked pig feces(P2) at 0 hour,Spiked pig feces(P2) at 16 hours (-20°C),P2 sample spiked with a mock community and stored at a temperature of -20°C for 16 hours,1,1,NA,WMS,NA,Illumina,DESeq2,0.01,FALSE,NA,NA,NA,decreased,NA,increased,decreased,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA -bsdb:1048/81/NA,Study 1048,laboratory experiment,34612701,10.1128%2FSpectrum.01387-21,https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8510183/,"Poulsen CS, Kaas RS, Aarestrup FM , Pamp SJ",Standard Sample Storage Conditions Have an Impact on Inferred Microbiome Composition and Antimicrobial Resistance Patterns,Microbiology spectrum,2021,"antimicrobial resistance, bacteria, complex samples, freezing, metagenomics, microbial community composition, microbiome, mock community, parasite, sample storage, spiking, synthetic mock community",Experiment 81,Denmark,Sus scrofa domesticus,Feces,UBERON:0001988,NA,NA,Spiked pig feces(P2) at 16 hours (-80°C),Spiked pig feces(P2) at 64 hours (22°C),P2 sample spiked with a mock community and stored at a temperature of 64 hours (22°C),1,1,NA,WMS,NA,Illumina,DESeq2,0.01,FALSE,NA,NA,NA,increased,NA,increased,increased,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA -bsdb:1048/82/NA,Study 1048,laboratory experiment,34612701,10.1128%2FSpectrum.01387-21,https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8510183/,"Poulsen CS, Kaas RS, Aarestrup FM , Pamp SJ",Standard Sample Storage Conditions Have an Impact on Inferred Microbiome Composition and Antimicrobial Resistance Patterns,Microbiology spectrum,2021,"antimicrobial resistance, bacteria, complex samples, freezing, metagenomics, microbial community composition, microbiome, mock community, parasite, sample storage, spiking, synthetic mock community",Experiment 82,Denmark,Sus scrofa domesticus,Feces,UBERON:0001988,NA,NA,Spiked pig feces(P2) at 16 hours (-80°C),Spiked pig feces(P2) at 64 hours (-80°C),P2 sample spiked with a mock community and stored at a temperature of 64 hours (-80°C),1,1,NA,WMS,NA,Illumina,DESeq2,0.01,FALSE,NA,NA,NA,decreased,NA,increased,decreased,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA -bsdb:1048/83/NA,Study 1048,laboratory experiment,34612701,10.1128%2FSpectrum.01387-21,https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8510183/,"Poulsen CS, Kaas RS, Aarestrup FM , Pamp SJ",Standard Sample Storage Conditions Have an Impact on Inferred Microbiome Composition and Antimicrobial Resistance Patterns,Microbiology spectrum,2021,"antimicrobial resistance, bacteria, complex samples, freezing, metagenomics, microbial community composition, microbiome, mock community, parasite, sample storage, spiking, synthetic mock community",Experiment 83,Denmark,Sus scrofa domesticus,Feces,UBERON:0001988,NA,NA,Spiked pig feces(P2) at 16 hours (-80°C),Spiked pig feces(P2) at 64 hours (-20°C),P2 sample spiked with a mock community and stored at a temperature of 64 hours (-20°C),1,1,NA,WMS,NA,Illumina,DESeq2,0.01,FALSE,NA,NA,NA,decreased,NA,increased,decreased,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA -bsdb:1048/84/NA,Study 1048,laboratory experiment,34612701,10.1128%2FSpectrum.01387-21,https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8510183/,"Poulsen CS, Kaas RS, Aarestrup FM , Pamp SJ",Standard Sample Storage Conditions Have an Impact on Inferred Microbiome Composition and Antimicrobial Resistance Patterns,Microbiology spectrum,2021,"antimicrobial resistance, bacteria, complex samples, freezing, metagenomics, microbial community composition, microbiome, mock community, parasite, sample storage, spiking, synthetic mock community",Experiment 84,Denmark,Sus scrofa domesticus,Feces,UBERON:0001988,NA,NA,Spiked pig feces(P2) at 16 hours (-80°C),Spiked pig feces(P2) at 16 hours (-20°C),P2 sample spiked with a mock community and stored at a temperature of 16 hours (-20°C),1,1,NA,WMS,NA,Illumina,DESeq2,0.01,FALSE,NA,NA,NA,unchanged,NA,increased,unchanged,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA -bsdb:1048/85/NA,Study 1048,laboratory experiment,34612701,10.1128%2FSpectrum.01387-21,https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8510183/,"Poulsen CS, Kaas RS, Aarestrup FM , Pamp SJ",Standard Sample Storage Conditions Have an Impact on Inferred Microbiome Composition and Antimicrobial Resistance Patterns,Microbiology spectrum,2021,"antimicrobial resistance, bacteria, complex samples, freezing, metagenomics, microbial community composition, microbiome, mock community, parasite, sample storage, spiking, synthetic mock community",Experiment 85,Denmark,Sus scrofa domesticus,Feces,UBERON:0001988,NA,NA,Spiked pig feces(P2) at 16 hours (-80°C),Spiked pig feces(P2) at 64 hours (5°C),P2 sample spiked with a mock community and stored at a temperature of 64 hours (5°C),1,1,NA,WMS,NA,Illumina,DESeq2,0.01,FALSE,NA,NA,NA,increased,NA,decreased,increased,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA -bsdb:1048/86/NA,Study 1048,laboratory experiment,34612701,10.1128%2FSpectrum.01387-21,https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8510183/,"Poulsen CS, Kaas RS, Aarestrup FM , Pamp SJ",Standard Sample Storage Conditions Have an Impact on Inferred Microbiome Composition and Antimicrobial Resistance Patterns,Microbiology spectrum,2021,"antimicrobial resistance, bacteria, complex samples, freezing, metagenomics, microbial community composition, microbiome, mock community, parasite, sample storage, spiking, synthetic mock community",Experiment 86,Denmark,Sus scrofa domesticus,Feces,UBERON:0001988,NA,NA,Spiked pig feces(P2) at 16 hours (-80°C),Spiked pig feces(P2) at 16 hours (22°C),P2 sample spiked with a mock community and stored at a temperature of 16 hours (22°C),1,1,NA,WMS,NA,Illumina,DESeq2,0.01,FALSE,NA,NA,NA,increased,NA,decreased,increased,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA -bsdb:1048/87/NA,Study 1048,laboratory experiment,34612701,10.1128%2FSpectrum.01387-21,https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8510183/,"Poulsen CS, Kaas RS, Aarestrup FM , Pamp SJ",Standard Sample Storage Conditions Have an Impact on Inferred Microbiome Composition and Antimicrobial Resistance Patterns,Microbiology spectrum,2021,"antimicrobial resistance, bacteria, complex samples, freezing, metagenomics, microbial community composition, microbiome, mock community, parasite, sample storage, spiking, synthetic mock community",Experiment 87,Denmark,Sus scrofa domesticus,Feces,UBERON:0001988,NA,NA,Spiked pig feces(P2) at 16 hours (-80°C),Spiked pig feces(P2) at 16 hours (5°C),P2 sample spiked with a mock community and stored at a temperature of 16 hours (5°C),1,1,NA,WMS,NA,Illumina,DESeq2,0.01,FALSE,NA,NA,NA,increased,NA,increased,increased,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA -bsdb:1048/88/NA,Study 1048,laboratory experiment,34612701,10.1128%2FSpectrum.01387-21,https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8510183/,"Poulsen CS, Kaas RS, Aarestrup FM , Pamp SJ",Standard Sample Storage Conditions Have an Impact on Inferred Microbiome Composition and Antimicrobial Resistance Patterns,Microbiology spectrum,2021,"antimicrobial resistance, bacteria, complex samples, freezing, metagenomics, microbial community composition, microbiome, mock community, parasite, sample storage, spiking, synthetic mock community",Experiment 88,Denmark,Sus scrofa domesticus,Feces,UBERON:0001988,NA,NA,Spiked pig feces(P2) at 64 hours (-80°C),Spiked pig feces(P2) at 16 hours (5°C),P2 sample spiked with a mock community and stored at a temperature of 16 hours (5°C),1,1,NA,WMS,NA,Illumina,DESeq2,0.01,FALSE,NA,NA,NA,increased,NA,decreased,increased,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA -bsdb:1048/89/NA,Study 1048,laboratory experiment,34612701,10.1128%2FSpectrum.01387-21,https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8510183/,"Poulsen CS, Kaas RS, Aarestrup FM , Pamp SJ",Standard Sample Storage Conditions Have an Impact on Inferred Microbiome Composition and Antimicrobial Resistance Patterns,Microbiology spectrum,2021,"antimicrobial resistance, bacteria, complex samples, freezing, metagenomics, microbial community composition, microbiome, mock community, parasite, sample storage, spiking, synthetic mock community",Experiment 89,Denmark,Sus scrofa domesticus,Feces,UBERON:0001988,NA,NA,Spiked pig feces(P2) at 64 hours (-80°C),Spiked pig feces(P2) at 16 hours (22°C),P2 sample spiked with a mock community and stored at a temperature of 16 hours (22°C),1,1,NA,WMS,NA,Illumina,DESeq2,0.01,FALSE,NA,NA,NA,increased,NA,decreased,increased,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA -bsdb:1048/90/NA,Study 1048,laboratory experiment,34612701,10.1128%2FSpectrum.01387-21,https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8510183/,"Poulsen CS, Kaas RS, Aarestrup FM , Pamp SJ",Standard Sample Storage Conditions Have an Impact on Inferred Microbiome Composition and Antimicrobial Resistance Patterns,Microbiology spectrum,2021,"antimicrobial resistance, bacteria, complex samples, freezing, metagenomics, microbial community composition, microbiome, mock community, parasite, sample storage, spiking, synthetic mock community",Experiment 90,Denmark,Sus scrofa domesticus,Feces,UBERON:0001988,NA,NA,Spiked pig feces(P2) at 64 hours (-80°C),Spiked pig feces(P2) at 64 hours (22°C),P2 sample spiked with a mock community and stored at a temperature of 64 hours (22°C),1,1,NA,WMS,NA,Illumina,DESeq2,0.01,FALSE,NA,NA,NA,increased,NA,decreased,increased,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA -bsdb:1048/91/NA,Study 1048,laboratory experiment,34612701,10.1128%2FSpectrum.01387-21,https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8510183/,"Poulsen CS, Kaas RS, Aarestrup FM , Pamp SJ",Standard Sample Storage Conditions Have an Impact on Inferred Microbiome Composition and Antimicrobial Resistance Patterns,Microbiology spectrum,2021,"antimicrobial resistance, bacteria, complex samples, freezing, metagenomics, microbial community composition, microbiome, mock community, parasite, sample storage, spiking, synthetic mock community",Experiment 91,Denmark,Sus scrofa domesticus,Feces,UBERON:0001988,NA,NA,Spiked pig feces(P2) at 16 hours (5°C),Spiked pig feces(P2) at 64 hours (22°C),P2 sample spiked with a mock community and stored at a temperature of 64 hours (22°C),1,1,NA,WMS,NA,Illumina,DESeq2,0.01,FALSE,NA,NA,NA,increased,NA,increased,increased,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA -bsdb:1048/92/NA,Study 1048,laboratory experiment,34612701,10.1128%2FSpectrum.01387-21,https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8510183/,"Poulsen CS, Kaas RS, Aarestrup FM , Pamp SJ",Standard Sample Storage Conditions Have an Impact on Inferred Microbiome Composition and Antimicrobial Resistance Patterns,Microbiology spectrum,2021,"antimicrobial resistance, bacteria, complex samples, freezing, metagenomics, microbial community composition, microbiome, mock community, parasite, sample storage, spiking, synthetic mock community",Experiment 92,Denmark,Sus scrofa domesticus,Feces,UBERON:0001988,NA,NA,Spiked pig feces(P2) at 16 hours (-20°C),Spiked pig feces(P2) at 64 hours (22°C),P2 sample spiked with a mock community and stored at a temperature of 64 hours (22°C),1,1,NA,WMS,NA,Illumina,DESeq2,0.01,FALSE,NA,NA,NA,increased,NA,increased,increased,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA -bsdb:1048/93/NA,Study 1048,laboratory experiment,34612701,10.1128%2FSpectrum.01387-21,https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8510183/,"Poulsen CS, Kaas RS, Aarestrup FM , Pamp SJ",Standard Sample Storage Conditions Have an Impact on Inferred Microbiome Composition and Antimicrobial Resistance Patterns,Microbiology spectrum,2021,"antimicrobial resistance, bacteria, complex samples, freezing, metagenomics, microbial community composition, microbiome, mock community, parasite, sample storage, spiking, synthetic mock community",Experiment 93,Denmark,Sus scrofa domesticus,Feces,UBERON:0001988,NA,NA,Spiked pig feces(P2) at 64 hours (22°C),Spiked pig feces(P2) at 64 hours (5°C),P2 sample spiked with a mock community and stored at a temperature of 64 hours (5°C),1,1,NA,WMS,NA,Illumina,DESeq2,0.01,FALSE,NA,NA,NA,increased,NA,increased,increased,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA -bsdb:1048/94/NA,Study 1048,laboratory experiment,34612701,10.1128%2FSpectrum.01387-21,https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8510183/,"Poulsen CS, Kaas RS, Aarestrup FM , Pamp SJ",Standard Sample Storage Conditions Have an Impact on Inferred Microbiome Composition and Antimicrobial Resistance Patterns,Microbiology spectrum,2021,"antimicrobial resistance, bacteria, complex samples, freezing, metagenomics, microbial community composition, microbiome, mock community, parasite, sample storage, spiking, synthetic mock community",Experiment 94,Denmark,Sus scrofa domesticus,Feces,UBERON:0001988,NA,NA,Spiked pig feces(P2) at 64 hours (-20°C),Spiked pig feces(P2) at 64 hours (22°C),P2 sample spiked with a mock community and stored at a temperature of 64 hours (22°C),1,1,NA,WMS,NA,Illumina,DESeq2,0.01,FALSE,NA,NA,NA,increased,NA,increased,increased,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA -bsdb:1048/95/NA,Study 1048,laboratory experiment,34612701,10.1128%2FSpectrum.01387-21,https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8510183/,"Poulsen CS, Kaas RS, Aarestrup FM , Pamp SJ",Standard Sample Storage Conditions Have an Impact on Inferred Microbiome Composition and Antimicrobial Resistance Patterns,Microbiology spectrum,2021,"antimicrobial resistance, bacteria, complex samples, freezing, metagenomics, microbial community composition, microbiome, mock community, parasite, sample storage, spiking, synthetic mock community",Experiment 95,Denmark,Sus scrofa domesticus,Feces,UBERON:0001988,NA,NA,Spiked pig feces(P2) at 16 hours (22°C),Spiked pig feces(P2) at 64 hours (-20°C),P2 sample spiked with a mock community and stored at a temperature of 64 hours (-20°C),1,1,NA,WMS,NA,Illumina,DESeq2,0.01,FALSE,NA,NA,NA,increased,NA,decreased,increased,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA -bsdb:1048/96/NA,Study 1048,laboratory experiment,34612701,10.1128%2FSpectrum.01387-21,https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8510183/,"Poulsen CS, Kaas RS, Aarestrup FM , Pamp SJ",Standard Sample Storage Conditions Have an Impact on Inferred Microbiome Composition and Antimicrobial Resistance Patterns,Microbiology spectrum,2021,"antimicrobial resistance, bacteria, complex samples, freezing, metagenomics, microbial community composition, microbiome, mock community, parasite, sample storage, spiking, synthetic mock community",Experiment 96,Denmark,Sus scrofa domesticus,Feces,UBERON:0001988,NA,NA,Spiked pig feces(P2) at 16 hours (-80°C),Spiked pig feces(P2) at 16 hours (22°C),P2 sample spiked with a mock community and stored at a temperature of 16 hours (22°C),1,1,NA,WMS,NA,Illumina,DESeq2,0.01,FALSE,NA,NA,NA,increased,NA,decreased,increased,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA -bsdb:1048/97/NA,Study 1048,laboratory experiment,34612701,10.1128%2FSpectrum.01387-21,https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8510183/,"Poulsen CS, Kaas RS, Aarestrup FM , Pamp SJ",Standard Sample Storage Conditions Have an Impact on Inferred Microbiome Composition and Antimicrobial Resistance Patterns,Microbiology spectrum,2021,"antimicrobial resistance, bacteria, complex samples, freezing, metagenomics, microbial community composition, microbiome, mock community, parasite, sample storage, spiking, synthetic mock community",Experiment 97,Denmark,Sus scrofa domesticus,Feces,UBERON:0001988,NA,NA,Spiked pig feces(P2) at 16 hours (-20°C),Spiked pig feces(P2) at 16 hours (22°C),P2 sample spiked with a mock community and stored at a temperature of 16 hours (22°C),1,1,NA,WMS,NA,Illumina,DESeq2,0.01,FALSE,NA,NA,NA,increased,NA,decreased,increased,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA -bsdb:1048/98/NA,Study 1048,laboratory experiment,34612701,10.1128%2FSpectrum.01387-21,https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8510183/,"Poulsen CS, Kaas RS, Aarestrup FM , Pamp SJ",Standard Sample Storage Conditions Have an Impact on Inferred Microbiome Composition and Antimicrobial Resistance Patterns,Microbiology spectrum,2021,"antimicrobial resistance, bacteria, complex samples, freezing, metagenomics, microbial community composition, microbiome, mock community, parasite, sample storage, spiking, synthetic mock community",Experiment 98,Denmark,Sus scrofa domesticus,Feces,UBERON:0001988,NA,NA,Spiked pig feces(P2) at 64 hours (-20°C),Spiked pig feces(P2) at 64 hours (5°C),P2 sample spiked with a mock community and stored at a temperature of 64 hours (5°C),1,1,NA,WMS,NA,Illumina,DESeq2,0.01,FALSE,NA,NA,NA,increased,NA,decreased,increased,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA -bsdb:1048/99/NA,Study 1048,laboratory experiment,34612701,10.1128%2FSpectrum.01387-21,https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8510183/,"Poulsen CS, Kaas RS, Aarestrup FM , Pamp SJ",Standard Sample Storage Conditions Have an Impact on Inferred Microbiome Composition and Antimicrobial Resistance Patterns,Microbiology spectrum,2021,"antimicrobial resistance, bacteria, complex samples, freezing, metagenomics, microbial community composition, microbiome, mock community, parasite, sample storage, spiking, synthetic mock community",Experiment 99,Denmark,Sus scrofa domesticus,Feces,UBERON:0001988,NA,NA,Spiked pig feces(P2) at 64 hours (-80°C),Spiked pig feces(P2) at 64 hours (5°C),P2 sample spiked with a mock community and stored at a temperature of 64 hours (5°C),1,1,NA,WMS,NA,Illumina,DESeq2,0.01,FALSE,NA,NA,NA,increased,NA,decreased,increased,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA -bsdb:1048/100/NA,Study 1048,laboratory experiment,34612701,10.1128%2FSpectrum.01387-21,https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8510183/,"Poulsen CS, Kaas RS, Aarestrup FM , Pamp SJ",Standard Sample Storage Conditions Have an Impact on Inferred Microbiome Composition and Antimicrobial Resistance Patterns,Microbiology spectrum,2021,"antimicrobial resistance, bacteria, complex samples, freezing, metagenomics, microbial community composition, microbiome, mock community, parasite, sample storage, spiking, synthetic mock community",Experiment 100,Denmark,Sus scrofa domesticus,Feces,UBERON:0001988,NA,NA,Spiked pig feces(P2) at 16 hours (-20°C),Spiked pig feces(P2) at 64 hours (5°C),P2 sample spiked with a mock community and stored at a temperature of 64 hours (5°C),1,1,NA,WMS,NA,Illumina,DESeq2,0.01,FALSE,NA,NA,NA,increased,NA,decreased,increased,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA -bsdb:1048/101/NA,Study 1048,laboratory experiment,34612701,10.1128%2FSpectrum.01387-21,https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8510183/,"Poulsen CS, Kaas RS, Aarestrup FM , Pamp SJ",Standard Sample Storage Conditions Have an Impact on Inferred Microbiome Composition and Antimicrobial Resistance Patterns,Microbiology spectrum,2021,"antimicrobial resistance, bacteria, complex samples, freezing, metagenomics, microbial community composition, microbiome, mock community, parasite, sample storage, spiking, synthetic mock community",Experiment 101,Denmark,Sus scrofa domesticus,Feces,UBERON:0001988,NA,NA,Spiked pig feces(P2) at 16 hours (5°C),Spiked pig feces(P2) at 64 hours (-20°C),P2 sample spiked with a mock community and stored at a temperature of 64 hours (-20°C),1,1,NA,WMS,NA,Illumina,DESeq2,0.01,FALSE,NA,NA,NA,increased,NA,decreased,increased,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA -bsdb:1048/102/NA,Study 1048,laboratory experiment,34612701,10.1128%2FSpectrum.01387-21,https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8510183/,"Poulsen CS, Kaas RS, Aarestrup FM , Pamp SJ",Standard Sample Storage Conditions Have an Impact on Inferred Microbiome Composition and Antimicrobial Resistance Patterns,Microbiology spectrum,2021,"antimicrobial resistance, bacteria, complex samples, freezing, metagenomics, microbial community composition, microbiome, mock community, parasite, sample storage, spiking, synthetic mock community",Experiment 102,Denmark,Sus scrofa domesticus,Feces,UBERON:0001988,NA,NA,Spiked pig feces(P2) at 64 hours (-80°C),Spiked pig feces(P2) at 16 hours (-20°C),P2 sample spiked with a mock community and stored at a temperature of 16 hours (-20°C),1,1,NA,WMS,NA,Illumina,DESeq2,0.01,FALSE,NA,NA,NA,unchanged,NA,decreased,increased,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA -bsdb:1048/103/NA,Study 1048,laboratory experiment,34612701,10.1128%2FSpectrum.01387-21,https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8510183/,"Poulsen CS, Kaas RS, Aarestrup FM , Pamp SJ",Standard Sample Storage Conditions Have an Impact on Inferred Microbiome Composition and Antimicrobial Resistance Patterns,Microbiology spectrum,2021,"antimicrobial resistance, bacteria, complex samples, freezing, metagenomics, microbial community composition, microbiome, mock community, parasite, sample storage, spiking, synthetic mock community",Experiment 103,Denmark,Sus scrofa domesticus,Feces,UBERON:0001988,NA,NA,Spiked pig feces(P2) at 64 hours (-80°C),Spiked pig feces(P2) at 64 hours (-20°C),P2 sample spiked with a mock community and stored at a temperature of 64 hours (-20°C),1,1,NA,WMS,NA,Illumina,DESeq2,0.01,FALSE,NA,NA,NA,decreased,NA,decreased,unchanged,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA -bsdb:1048/104/NA,Study 1048,laboratory experiment,34612701,10.1128%2FSpectrum.01387-21,https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8510183/,"Poulsen CS, Kaas RS, Aarestrup FM , Pamp SJ",Standard Sample Storage Conditions Have an Impact on Inferred Microbiome Composition and Antimicrobial Resistance Patterns,Microbiology spectrum,2021,"antimicrobial resistance, bacteria, complex samples, freezing, metagenomics, microbial community composition, microbiome, mock community, parasite, sample storage, spiking, synthetic mock community",Experiment 104,Denmark,Sus scrofa domesticus,Feces,UBERON:0001988,NA,NA,Spiked pig feces(P2) at 16 hours (-20°C),Spiked pig feces(P2) at 64 hours (-20°C),P2 sample spiked with a mock community and stored at a temperature of 64 hours (-20°C),1,1,NA,WMS,NA,Illumina,DESeq2,0.01,FALSE,NA,NA,NA,decreased,NA,decreased,decreased,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA -bsdb:1048/105/NA,Study 1048,laboratory experiment,34612701,10.1128%2FSpectrum.01387-21,https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8510183/,"Poulsen CS, Kaas RS, Aarestrup FM , Pamp SJ",Standard Sample Storage Conditions Have an Impact on Inferred Microbiome Composition and Antimicrobial Resistance Patterns,Microbiology spectrum,2021,"antimicrobial resistance, bacteria, complex samples, freezing, metagenomics, microbial community composition, microbiome, mock community, parasite, sample storage, spiking, synthetic mock community",Experiment 105,Denmark,Sus scrofa domesticus,Feces,UBERON:0001988,NA,NA,Spiked pig feces(P2) at 16 hours (5°C),Spiked pig feces(P2) at 64 hours (5°C),P2 sample spiked with a mock community and stored at a temperature of 64 hours (5°C),1,1,NA,WMS,NA,Illumina,DESeq2,0.01,FALSE,NA,NA,NA,increased,NA,decreased,unchanged,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA -bsdb:1048/106/NA,Study 1048,laboratory experiment,34612701,10.1128%2FSpectrum.01387-21,https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8510183/,"Poulsen CS, Kaas RS, Aarestrup FM , Pamp SJ",Standard Sample Storage Conditions Have an Impact on Inferred Microbiome Composition and Antimicrobial Resistance Patterns,Microbiology spectrum,2021,"antimicrobial resistance, bacteria, complex samples, freezing, metagenomics, microbial community composition, microbiome, mock community, parasite, sample storage, spiking, synthetic mock community",Experiment 106,Denmark,Sus scrofa domesticus,Feces,UBERON:0001988,NA,NA,Spiked pig feces(P2) at 16 hours (5°C),Spiked pig feces(P2) at 16 hours (22°C),P2 sample spiked with a mock community and stored at a temperature of 16 hours (22°C),1,1,NA,WMS,NA,Illumina,DESeq2,0.01,FALSE,NA,NA,NA,increased,NA,decreased,decreased,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA -bsdb:1048/107/NA,Study 1048,laboratory experiment,34612701,10.1128%2FSpectrum.01387-21,https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8510183/,"Poulsen CS, Kaas RS, Aarestrup FM , Pamp SJ",Standard Sample Storage Conditions Have an Impact on Inferred Microbiome Composition and Antimicrobial Resistance Patterns,Microbiology spectrum,2021,"antimicrobial resistance, bacteria, complex samples, freezing, metagenomics, microbial community composition, microbiome, mock community, parasite, sample storage, spiking, synthetic mock community",Experiment 107,Denmark,Sus scrofa domesticus,Feces,UBERON:0001988,NA,NA,Spiked pig feces(P2) at 64 hours (5°C),Spiked pig feces(P2) at 16 hours (22°C),P2 sample spiked with a mock community and stored at a temperature of 16 hours (22°C),1,1,NA,WMS,NA,Illumina,DESeq2,0.01,FALSE,NA,NA,NA,decreased,NA,decreased,decreased,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA -bsdb:1048/108/NA,Study 1048,laboratory experiment,34612701,10.1128%2FSpectrum.01387-21,https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8510183/,"Poulsen CS, Kaas RS, Aarestrup FM , Pamp SJ",Standard Sample Storage Conditions Have an Impact on Inferred Microbiome Composition and Antimicrobial Resistance Patterns,Microbiology spectrum,2021,"antimicrobial resistance, bacteria, complex samples, freezing, metagenomics, microbial community composition, microbiome, mock community, parasite, sample storage, spiking, synthetic mock community",Experiment 108,Denmark,Sus scrofa domesticus,Feces,UBERON:0001988,Microbiome,EFO:0004982,Spiked pig feces(P2) at 16 hours (22°C),Spiked pig feces(P2) at 64 hours (22°C),P2 sample spiked with a mock community and stored at a temperature of 64 hours (22°C),1,1,NA,WMS,NA,Illumina,DESeq2,0.01,FALSE,NA,NA,NA,decreased,NA,increased,decreased,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA -bsdb:1048/109/1,Study 1048,laboratory experiment,34612701,10.1128%2FSpectrum.01387-21,https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8510183/,"Poulsen CS, Kaas RS, Aarestrup FM , Pamp SJ",Standard Sample Storage Conditions Have an Impact on Inferred Microbiome Composition and Antimicrobial Resistance Patterns,Microbiology spectrum,2021,"antimicrobial resistance, bacteria, complex samples, freezing, metagenomics, microbial community composition, microbiome, mock community, parasite, sample storage, spiking, synthetic mock community",Experiment 109,Denmark,Sus scrofa domesticus,Feces,UBERON:0001988,Microbiome,EFO:0004982,Unspiked pig feces(P2) at 0 hour,Unspiked pig feces(P2) at 16 hours (-80°C),Unspiked P2 sample stored at a temperature of -80°C for 16 hours,1,1,NA,WMS,NA,Illumina,DESeq2,0.01,FALSE,NA,NA,NA,decreased,NA,increased,decreased,NA,NA,Signature 1,Figure 4,27 March 2024,Aleru Divine,Aleru Divine,Differential abundance of selected highly abundant bacteria between the storage conditions in unspiked pig feces P2,increased,"k__Bacteria|p__Bacillota|c__Negativicutes|o__Acidaminococcales|f__Acidaminococcaceae|g__Phascolarctobacterium,k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella,k__Bacteria|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Roseburia",2|1239|909932|1843488|909930|33024;2|976|200643|171549|171552|838;2|1239|186801|3085636|186803|841,Complete,NA -bsdb:1048/109/2,Study 1048,laboratory experiment,34612701,10.1128%2FSpectrum.01387-21,https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8510183/,"Poulsen CS, Kaas RS, Aarestrup FM , Pamp SJ",Standard Sample Storage Conditions Have an Impact on Inferred Microbiome Composition and Antimicrobial Resistance Patterns,Microbiology spectrum,2021,"antimicrobial resistance, bacteria, complex samples, freezing, metagenomics, microbial community composition, microbiome, mock community, parasite, sample storage, spiking, synthetic mock community",Experiment 109,Denmark,Sus scrofa domesticus,Feces,UBERON:0001988,Microbiome,EFO:0004982,Unspiked pig feces(P2) at 0 hour,Unspiked pig feces(P2) at 16 hours (-80°C),Unspiked P2 sample stored at a temperature of -80°C for 16 hours,1,1,NA,WMS,NA,Illumina,DESeq2,0.01,FALSE,NA,NA,NA,decreased,NA,increased,decreased,NA,NA,Signature 2,Figure 4,27 March 2024,Aleru Divine,Aleru Divine,Differential abundance of selected highly abundant bacteria between the storage conditions in unspiked pig feces P2,decreased,"k__Bacteria|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Faecalibacterium,k__Bacteria|p__Spirochaetota|c__Spirochaetia|o__Spirochaetales|f__Treponemataceae|g__Treponema",2|1239|186801|186802|216572|216851;2|203691|203692|136|2845253|157,Complete,NA -bsdb:1048/110/1,Study 1048,laboratory experiment,34612701,10.1128%2FSpectrum.01387-21,https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8510183/,"Poulsen CS, Kaas RS, Aarestrup FM , Pamp SJ",Standard Sample Storage Conditions Have an Impact on Inferred Microbiome Composition and Antimicrobial Resistance Patterns,Microbiology spectrum,2021,"antimicrobial resistance, bacteria, complex samples, freezing, metagenomics, microbial community composition, microbiome, mock community, parasite, sample storage, spiking, synthetic mock community",Experiment 110,Denmark,Sus scrofa domesticus,Feces,UBERON:0001988,Microbiome,EFO:0004982,Unspiked pig feces(P2) at 0 hour,Unspiked pig feces(P2) at 64 hours (-80°C),Unspiked P2 sample stored at a temperature of -80°C for 64 hours,1,1,NA,WMS,NA,Illumina,DESeq2,0.01,FALSE,NA,NA,NA,decreased,NA,unchanged,decreased,NA,NA,Signature 1,Figure 4,27 March 2024,Aleru Divine,Aleru Divine,Differential abundance of selected highly abundant bacteria between the storage conditions in unspiked pig feces P2,increased,k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella,2|976|200643|171549|171552|838,Complete,NA -bsdb:1048/110/2,Study 1048,laboratory experiment,34612701,10.1128%2FSpectrum.01387-21,https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8510183/,"Poulsen CS, Kaas RS, Aarestrup FM , Pamp SJ",Standard Sample Storage Conditions Have an Impact on Inferred Microbiome Composition and Antimicrobial Resistance Patterns,Microbiology spectrum,2021,"antimicrobial resistance, bacteria, complex samples, freezing, metagenomics, microbial community composition, microbiome, mock community, parasite, sample storage, spiking, synthetic mock community",Experiment 110,Denmark,Sus scrofa domesticus,Feces,UBERON:0001988,Microbiome,EFO:0004982,Unspiked pig feces(P2) at 0 hour,Unspiked pig feces(P2) at 64 hours (-80°C),Unspiked P2 sample stored at a temperature of -80°C for 64 hours,1,1,NA,WMS,NA,Illumina,DESeq2,0.01,FALSE,NA,NA,NA,decreased,NA,unchanged,decreased,NA,NA,Signature 2,Figure 4,27 March 2024,Aleru Divine,Aleru Divine,Differential abundance of selected highly abundant bacteria between the storage conditions in unspiked pig feces P2,decreased,"k__Bacteria|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Faecalibacterium,k__Bacteria|p__Bacillota|c__Negativicutes|o__Acidaminococcales|f__Acidaminococcaceae|g__Phascolarctobacterium,k__Bacteria|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Roseburia,k__Bacteria|p__Spirochaetota|c__Spirochaetia|o__Spirochaetales|f__Treponemataceae|g__Treponema",2|1239|186801|186802|216572|216851;2|1239|909932|1843488|909930|33024;2|1239|186801|3085636|186803|841;2|203691|203692|136|2845253|157,Complete,NA -bsdb:1048/111/1,Study 1048,laboratory experiment,34612701,10.1128%2FSpectrum.01387-21,https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8510183/,"Poulsen CS, Kaas RS, Aarestrup FM , Pamp SJ",Standard Sample Storage Conditions Have an Impact on Inferred Microbiome Composition and Antimicrobial Resistance Patterns,Microbiology spectrum,2021,"antimicrobial resistance, bacteria, complex samples, freezing, metagenomics, microbial community composition, microbiome, mock community, parasite, sample storage, spiking, synthetic mock community",Experiment 111,Denmark,Sus scrofa domesticus,Feces,UBERON:0001988,Microbiome,EFO:0004982,Unspiked pig feces(P2) at 0 hour,Unspiked pig feces(P2) at 16 hours (-20°C),Unspiked P2 sample stored at a temperature of -20°C for 16 hours,1,1,NA,WMS,NA,Illumina,DESeq2,0.01,FALSE,NA,NA,NA,decreased,NA,unchanged,decreased,NA,NA,Signature 1,Figure 4,27 March 2024,Aleru Divine,Aleru Divine,Differential abundance of selected highly abundant bacteria between the storage conditions in unspiked pig feces P2,increased,"k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella,k__Bacteria|p__Bacillota|c__Negativicutes|o__Acidaminococcales|f__Acidaminococcaceae|g__Phascolarctobacterium,k__Bacteria|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Roseburia",2|976|200643|171549|171552|838;2|1239|909932|1843488|909930|33024;2|1239|186801|3085636|186803|841,Complete,NA -bsdb:1048/111/2,Study 1048,laboratory experiment,34612701,10.1128%2FSpectrum.01387-21,https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8510183/,"Poulsen CS, Kaas RS, Aarestrup FM , Pamp SJ",Standard Sample Storage Conditions Have an Impact on Inferred Microbiome Composition and Antimicrobial Resistance Patterns,Microbiology spectrum,2021,"antimicrobial resistance, bacteria, complex samples, freezing, metagenomics, microbial community composition, microbiome, mock community, parasite, sample storage, spiking, synthetic mock community",Experiment 111,Denmark,Sus scrofa domesticus,Feces,UBERON:0001988,Microbiome,EFO:0004982,Unspiked pig feces(P2) at 0 hour,Unspiked pig feces(P2) at 16 hours (-20°C),Unspiked P2 sample stored at a temperature of -20°C for 16 hours,1,1,NA,WMS,NA,Illumina,DESeq2,0.01,FALSE,NA,NA,NA,decreased,NA,unchanged,decreased,NA,NA,Signature 2,Figure 4,27 March 2024,Aleru Divine,Aleru Divine,Differential abundance of selected highly abundant bacteria between the storage conditions in unspiked pig feces P2,decreased,"k__Bacteria|p__Spirochaetota|c__Spirochaetia|o__Spirochaetales|f__Treponemataceae|g__Treponema,k__Bacteria|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Faecalibacterium",2|203691|203692|136|2845253|157;2|1239|186801|186802|216572|216851,Complete,NA -bsdb:1048/112/1,Study 1048,laboratory experiment,34612701,10.1128%2FSpectrum.01387-21,https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8510183/,"Poulsen CS, Kaas RS, Aarestrup FM , Pamp SJ",Standard Sample Storage Conditions Have an Impact on Inferred Microbiome Composition and Antimicrobial Resistance Patterns,Microbiology spectrum,2021,"antimicrobial resistance, bacteria, complex samples, freezing, metagenomics, microbial community composition, microbiome, mock community, parasite, sample storage, spiking, synthetic mock community",Experiment 112,Denmark,Sus scrofa domesticus,Feces,UBERON:0001988,Microbiome,EFO:0004982,Unspiked pig feces(P2) at 0 hour,Unspiked pig feces(P2) at 64 hours (-20°C),Unspiked P2 sample stored at a temperature of -20°C for 64 hours,1,1,NA,WMS,NA,Illumina,DESeq2,0.01,FALSE,NA,NA,NA,decreased,NA,decreased,decreased,NA,NA,Signature 1,Figure 4,27 March 2024,Aleru Divine,Aleru Divine,Differential abundance of selected highly abundant bacteria between the storage conditions in unspiked pig feces P2,increased,"k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella,k__Bacteria|p__Bacillota|c__Negativicutes|o__Acidaminococcales|f__Acidaminococcaceae|g__Phascolarctobacterium",2|976|200643|171549|171552|838;2|1239|909932|1843488|909930|33024,Complete,NA -bsdb:1048/112/2,Study 1048,laboratory experiment,34612701,10.1128%2FSpectrum.01387-21,https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8510183/,"Poulsen CS, Kaas RS, Aarestrup FM , Pamp SJ",Standard Sample Storage Conditions Have an Impact on Inferred Microbiome Composition and Antimicrobial Resistance Patterns,Microbiology spectrum,2021,"antimicrobial resistance, bacteria, complex samples, freezing, metagenomics, microbial community composition, microbiome, mock community, parasite, sample storage, spiking, synthetic mock community",Experiment 112,Denmark,Sus scrofa domesticus,Feces,UBERON:0001988,Microbiome,EFO:0004982,Unspiked pig feces(P2) at 0 hour,Unspiked pig feces(P2) at 64 hours (-20°C),Unspiked P2 sample stored at a temperature of -20°C for 64 hours,1,1,NA,WMS,NA,Illumina,DESeq2,0.01,FALSE,NA,NA,NA,decreased,NA,decreased,decreased,NA,NA,Signature 2,Figure 4,27 March 2024,Aleru Divine,Aleru Divine,Differential abundance of selected highly abundant bacteria between the storage conditions in unspiked pig feces P2,decreased,"k__Bacteria|p__Spirochaetota|c__Spirochaetia|o__Spirochaetales|f__Treponemataceae|g__Treponema,k__Bacteria|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Faecalibacterium,k__Bacteria|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Roseburia",2|203691|203692|136|2845253|157;2|1239|186801|186802|216572|216851;2|1239|186801|3085636|186803|841,Complete,NA -bsdb:1048/113/1,Study 1048,laboratory experiment,34612701,10.1128%2FSpectrum.01387-21,https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8510183/,"Poulsen CS, Kaas RS, Aarestrup FM , Pamp SJ",Standard Sample Storage Conditions Have an Impact on Inferred Microbiome Composition and Antimicrobial Resistance Patterns,Microbiology spectrum,2021,"antimicrobial resistance, bacteria, complex samples, freezing, metagenomics, microbial community composition, microbiome, mock community, parasite, sample storage, spiking, synthetic mock community",Experiment 113,Denmark,Sus scrofa domesticus,Feces,UBERON:0001988,Microbiome,EFO:0004982,Unspiked pig feces(P2) at 0 hour,Unspiked pig feces(P2) at 16 hours (5°C),Unspiked P2 sample stored at a temperature of 5°C for 16 hours,1,1,NA,WMS,NA,Illumina,DESeq2,0.01,FALSE,NA,NA,NA,increased,NA,decreased,increased,NA,NA,Signature 1,Figure 4,27 March 2024,Aleru Divine,Aleru Divine,Differential abundance of selected highly abundant bacteria between the storage conditions in unspiked pig feces P2,increased,"k__Bacteria|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Faecalibacterium,k__Bacteria|p__Bacillota|c__Negativicutes|o__Acidaminococcales|f__Acidaminococcaceae|g__Phascolarctobacterium,k__Bacteria|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Roseburia",2|1239|186801|186802|216572|216851;2|1239|909932|1843488|909930|33024;2|1239|186801|3085636|186803|841,Complete,NA -bsdb:1048/113/2,Study 1048,laboratory experiment,34612701,10.1128%2FSpectrum.01387-21,https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8510183/,"Poulsen CS, Kaas RS, Aarestrup FM , Pamp SJ",Standard Sample Storage Conditions Have an Impact on Inferred Microbiome Composition and Antimicrobial Resistance Patterns,Microbiology spectrum,2021,"antimicrobial resistance, bacteria, complex samples, freezing, metagenomics, microbial community composition, microbiome, mock community, parasite, sample storage, spiking, synthetic mock community",Experiment 113,Denmark,Sus scrofa domesticus,Feces,UBERON:0001988,Microbiome,EFO:0004982,Unspiked pig feces(P2) at 0 hour,Unspiked pig feces(P2) at 16 hours (5°C),Unspiked P2 sample stored at a temperature of 5°C for 16 hours,1,1,NA,WMS,NA,Illumina,DESeq2,0.01,FALSE,NA,NA,NA,increased,NA,decreased,increased,NA,NA,Signature 2,Figure 4,27 March 2024,Aleru Divine,Aleru Divine,Differential abundance of selected highly abundant bacteria between the storage conditions in unspiked pig feces P2,decreased,"k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella,k__Bacteria|p__Spirochaetota|c__Spirochaetia|o__Spirochaetales|f__Treponemataceae|g__Treponema",2|976|200643|171549|171552|838;2|203691|203692|136|2845253|157,Complete,NA -bsdb:1048/114/1,Study 1048,laboratory experiment,34612701,10.1128%2FSpectrum.01387-21,https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8510183/,"Poulsen CS, Kaas RS, Aarestrup FM , Pamp SJ",Standard Sample Storage Conditions Have an Impact on Inferred Microbiome Composition and Antimicrobial Resistance Patterns,Microbiology spectrum,2021,"antimicrobial resistance, bacteria, complex samples, freezing, metagenomics, microbial community composition, microbiome, mock community, parasite, sample storage, spiking, synthetic mock community",Experiment 114,Denmark,Sus scrofa domesticus,Feces,UBERON:0001988,Microbiome,EFO:0004982,Unspiked pig feces(P2) at 0 hour,Unspiked pig feces(P2) at 64 hours (5°C),Unspiked P2 sample stored at a temperature of 5°C for 64 hours,1,1,NA,WMS,NA,Illumina,DESeq2,0.01,FALSE,NA,NA,NA,increased,NA,decreased,increased,NA,NA,Signature 1,Figure 4,27 March 2024,Aleru Divine,Aleru Divine,Differential abundance of selected highly abundant bacteria between the storage conditions in unspiked pig feces P2,increased,"k__Bacteria|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Faecalibacterium,k__Bacteria|p__Bacillota|c__Negativicutes|o__Acidaminococcales|f__Acidaminococcaceae|g__Phascolarctobacterium,k__Bacteria|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Roseburia",2|1239|186801|186802|216572|216851;2|1239|909932|1843488|909930|33024;2|1239|186801|3085636|186803|841,Complete,NA -bsdb:1048/114/2,Study 1048,laboratory experiment,34612701,10.1128%2FSpectrum.01387-21,https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8510183/,"Poulsen CS, Kaas RS, Aarestrup FM , Pamp SJ",Standard Sample Storage Conditions Have an Impact on Inferred Microbiome Composition and Antimicrobial Resistance Patterns,Microbiology spectrum,2021,"antimicrobial resistance, bacteria, complex samples, freezing, metagenomics, microbial community composition, microbiome, mock community, parasite, sample storage, spiking, synthetic mock community",Experiment 114,Denmark,Sus scrofa domesticus,Feces,UBERON:0001988,Microbiome,EFO:0004982,Unspiked pig feces(P2) at 0 hour,Unspiked pig feces(P2) at 64 hours (5°C),Unspiked P2 sample stored at a temperature of 5°C for 64 hours,1,1,NA,WMS,NA,Illumina,DESeq2,0.01,FALSE,NA,NA,NA,increased,NA,decreased,increased,NA,NA,Signature 2,Figure 4,27 March 2024,Aleru Divine,Aleru Divine,Differential abundance of selected highly abundant bacteria between the storage conditions in unspiked pig feces P2,decreased,"k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella,k__Bacteria|p__Spirochaetota|c__Spirochaetia|o__Spirochaetales|f__Treponemataceae|g__Treponema",2|976|200643|171549|171552|838;2|203691|203692|136|2845253|157,Complete,NA -bsdb:1048/115/1,Study 1048,laboratory experiment,34612701,10.1128%2FSpectrum.01387-21,https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8510183/,"Poulsen CS, Kaas RS, Aarestrup FM , Pamp SJ",Standard Sample Storage Conditions Have an Impact on Inferred Microbiome Composition and Antimicrobial Resistance Patterns,Microbiology spectrum,2021,"antimicrobial resistance, bacteria, complex samples, freezing, metagenomics, microbial community composition, microbiome, mock community, parasite, sample storage, spiking, synthetic mock community",Experiment 115,Denmark,Sus scrofa domesticus,Feces,UBERON:0001988,Microbiome,EFO:0004982,Unspiked pig feces(P2) at 0 hour,Unspiked pig feces(P2) at 16 hours (22°C),Unspiked P2 sample stored at a temperature of 22°C for 16 hours,1,1,NA,WMS,NA,Illumina,DESeq2,0.01,FALSE,NA,NA,NA,increased,NA,unchanged,increased,NA,NA,Signature 1,Figure 4,27 March 2024,Aleru Divine,Aleru Divine,Differential abundance of selected highly abundant bacteria between the storage conditions in unspiked pig feces P2,increased,"k__Bacteria|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Faecalibacterium,k__Bacteria|p__Bacillota|c__Negativicutes|o__Acidaminococcales|f__Acidaminococcaceae|g__Phascolarctobacterium,k__Bacteria|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Roseburia",2|1239|186801|186802|216572|216851;2|1239|909932|1843488|909930|33024;2|1239|186801|3085636|186803|841,Complete,NA -bsdb:1048/115/2,Study 1048,laboratory experiment,34612701,10.1128%2FSpectrum.01387-21,https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8510183/,"Poulsen CS, Kaas RS, Aarestrup FM , Pamp SJ",Standard Sample Storage Conditions Have an Impact on Inferred Microbiome Composition and Antimicrobial Resistance Patterns,Microbiology spectrum,2021,"antimicrobial resistance, bacteria, complex samples, freezing, metagenomics, microbial community composition, microbiome, mock community, parasite, sample storage, spiking, synthetic mock community",Experiment 115,Denmark,Sus scrofa domesticus,Feces,UBERON:0001988,Microbiome,EFO:0004982,Unspiked pig feces(P2) at 0 hour,Unspiked pig feces(P2) at 16 hours (22°C),Unspiked P2 sample stored at a temperature of 22°C for 16 hours,1,1,NA,WMS,NA,Illumina,DESeq2,0.01,FALSE,NA,NA,NA,increased,NA,unchanged,increased,NA,NA,Signature 2,Figure 4,27 March 2024,Aleru Divine,Aleru Divine,Differential abundance of selected highly abundant bacteria between the storage conditions in unspiked pig feces P2,decreased,"k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella,k__Bacteria|p__Spirochaetota|c__Spirochaetia|o__Spirochaetales|f__Treponemataceae|g__Treponema",2|976|200643|171549|171552|838;2|203691|203692|136|2845253|157,Complete,NA -bsdb:1048/116/1,Study 1048,laboratory experiment,34612701,10.1128%2FSpectrum.01387-21,https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8510183/,"Poulsen CS, Kaas RS, Aarestrup FM , Pamp SJ",Standard Sample Storage Conditions Have an Impact on Inferred Microbiome Composition and Antimicrobial Resistance Patterns,Microbiology spectrum,2021,"antimicrobial resistance, bacteria, complex samples, freezing, metagenomics, microbial community composition, microbiome, mock community, parasite, sample storage, spiking, synthetic mock community",Experiment 116,Denmark,Sus scrofa domesticus,Feces,UBERON:0001988,Microbiome,EFO:0004982,Unspiked pig feces(P2) at 0 hour,Unspiked pig feces(P2) at 64 hours (22°C),Unspiked P2 sample stored at a temperature of 22°C for 64 hours,1,1,NA,WMS,NA,Illumina,DESeq2,0.01,FALSE,NA,NA,NA,increased,NA,decreased,increased,NA,NA,Signature 1,Figure 4,27 March 2024,Aleru Divine,Aleru Divine,Differential abundance of selected highly abundant bacteria between the storage conditions in unspiked pig feces P2,increased,"k__Bacteria|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Faecalibacterium,k__Bacteria|p__Bacillota|c__Negativicutes|o__Acidaminococcales|f__Acidaminococcaceae|g__Phascolarctobacterium,k__Bacteria|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Roseburia",2|1239|186801|186802|216572|216851;2|1239|909932|1843488|909930|33024;2|1239|186801|3085636|186803|841,Complete,NA -bsdb:1048/116/2,Study 1048,laboratory experiment,34612701,10.1128%2FSpectrum.01387-21,https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8510183/,"Poulsen CS, Kaas RS, Aarestrup FM , Pamp SJ",Standard Sample Storage Conditions Have an Impact on Inferred Microbiome Composition and Antimicrobial Resistance Patterns,Microbiology spectrum,2021,"antimicrobial resistance, bacteria, complex samples, freezing, metagenomics, microbial community composition, microbiome, mock community, parasite, sample storage, spiking, synthetic mock community",Experiment 116,Denmark,Sus scrofa domesticus,Feces,UBERON:0001988,Microbiome,EFO:0004982,Unspiked pig feces(P2) at 0 hour,Unspiked pig feces(P2) at 64 hours (22°C),Unspiked P2 sample stored at a temperature of 22°C for 64 hours,1,1,NA,WMS,NA,Illumina,DESeq2,0.01,FALSE,NA,NA,NA,increased,NA,decreased,increased,NA,NA,Signature 2,Figure 4,27 March 2024,Aleru Divine,Aleru Divine,Differential abundance of selected highly abundant bacteria between the storage conditions in unspiked pig feces P2,decreased,"k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella,k__Bacteria|p__Spirochaetota|c__Spirochaetia|o__Spirochaetales|f__Treponemataceae|g__Treponema",2|976|200643|171549|171552|838;2|203691|203692|136|2845253|157,Complete,NA -bsdb:1048/117/1,Study 1048,laboratory experiment,34612701,10.1128%2FSpectrum.01387-21,https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8510183/,"Poulsen CS, Kaas RS, Aarestrup FM , Pamp SJ",Standard Sample Storage Conditions Have an Impact on Inferred Microbiome Composition and Antimicrobial Resistance Patterns,Microbiology spectrum,2021,"antimicrobial resistance, bacteria, complex samples, freezing, metagenomics, microbial community composition, microbiome, mock community, parasite, sample storage, spiking, synthetic mock community",Experiment 117,Denmark,Sus scrofa domesticus,Feces,UBERON:0001988,Microbiome,EFO:0004982,Unspiked pig feces(P2) at 16 hours (-80°C),Unspiked pig feces(P2) at 64 hours (80°C),Unspiked P2 sample stored at a temperature of -80°C for 64 hours,1,1,NA,WMS,NA,Illumina,DESeq2,0.01,FALSE,NA,NA,NA,decreased,NA,decreased,decreased,NA,NA,Signature 1,Figure 4,27 March 2024,Aleru Divine,Aleru Divine,Differential abundance of selected highly abundant bacteria between the storage conditions in unspiked pig feces P2,increased,k__Bacteria|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Faecalibacterium,2|1239|186801|186802|216572|216851,Complete,NA -bsdb:1048/117/2,Study 1048,laboratory experiment,34612701,10.1128%2FSpectrum.01387-21,https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8510183/,"Poulsen CS, Kaas RS, Aarestrup FM , Pamp SJ",Standard Sample Storage Conditions Have an Impact on Inferred Microbiome Composition and Antimicrobial Resistance Patterns,Microbiology spectrum,2021,"antimicrobial resistance, bacteria, complex samples, freezing, metagenomics, microbial community composition, microbiome, mock community, parasite, sample storage, spiking, synthetic mock community",Experiment 117,Denmark,Sus scrofa domesticus,Feces,UBERON:0001988,Microbiome,EFO:0004982,Unspiked pig feces(P2) at 16 hours (-80°C),Unspiked pig feces(P2) at 64 hours (80°C),Unspiked P2 sample stored at a temperature of -80°C for 64 hours,1,1,NA,WMS,NA,Illumina,DESeq2,0.01,FALSE,NA,NA,NA,decreased,NA,decreased,decreased,NA,NA,Signature 2,Figure 4,27 March 2024,Aleru Divine,Aleru Divine,Differential abundance of selected highly abundant bacteria between the storage conditions in unspiked pig feces P2,decreased,"k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella,k__Bacteria|p__Spirochaetota|c__Spirochaetia|o__Spirochaetales|f__Treponemataceae|g__Treponema,k__Bacteria|p__Bacillota|c__Negativicutes|o__Acidaminococcales|f__Acidaminococcaceae|g__Phascolarctobacterium,k__Bacteria|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Roseburia",2|976|200643|171549|171552|838;2|203691|203692|136|2845253|157;2|1239|909932|1843488|909930|33024;2|1239|186801|3085636|186803|841,Complete,NA -bsdb:1048/118/1,Study 1048,laboratory experiment,34612701,10.1128%2FSpectrum.01387-21,https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8510183/,"Poulsen CS, Kaas RS, Aarestrup FM , Pamp SJ",Standard Sample Storage Conditions Have an Impact on Inferred Microbiome Composition and Antimicrobial Resistance Patterns,Microbiology spectrum,2021,"antimicrobial resistance, bacteria, complex samples, freezing, metagenomics, microbial community composition, microbiome, mock community, parasite, sample storage, spiking, synthetic mock community",Experiment 118,Denmark,Sus scrofa domesticus,Feces,UBERON:0001988,Microbiome,EFO:0004982,Unspiked pig feces(P2) at 16 hours (-80°C),Unspiked pig feces(P2) at 16 hours (-20°C),Unspiked P2 sample stored at a temperature of -20°C for 16 hours,1,1,NA,WMS,NA,Illumina,DESeq2,0.01,FALSE,NA,NA,NA,decreased,NA,increased,decreased,NA,NA,Signature 1,Figure 4,27 March 2024,Aleru Divine,Aleru Divine,Differential abundance of selected highly abundant bacteria between the storage conditions in unspiked pig feces P2,increased,"k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella,k__Bacteria|p__Bacillota|c__Negativicutes|o__Acidaminococcales|f__Acidaminococcaceae|g__Phascolarctobacterium",2|976|200643|171549|171552|838;2|1239|909932|1843488|909930|33024,Complete,NA -bsdb:1048/118/2,Study 1048,laboratory experiment,34612701,10.1128%2FSpectrum.01387-21,https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8510183/,"Poulsen CS, Kaas RS, Aarestrup FM , Pamp SJ",Standard Sample Storage Conditions Have an Impact on Inferred Microbiome Composition and Antimicrobial Resistance Patterns,Microbiology spectrum,2021,"antimicrobial resistance, bacteria, complex samples, freezing, metagenomics, microbial community composition, microbiome, mock community, parasite, sample storage, spiking, synthetic mock community",Experiment 118,Denmark,Sus scrofa domesticus,Feces,UBERON:0001988,Microbiome,EFO:0004982,Unspiked pig feces(P2) at 16 hours (-80°C),Unspiked pig feces(P2) at 16 hours (-20°C),Unspiked P2 sample stored at a temperature of -20°C for 16 hours,1,1,NA,WMS,NA,Illumina,DESeq2,0.01,FALSE,NA,NA,NA,decreased,NA,increased,decreased,NA,NA,Signature 2,Figure 4,27 March 2024,Aleru Divine,Aleru Divine,Differential abundance of selected highly abundant bacteria between the storage conditions in unspiked pig feces P2,decreased,"k__Bacteria|p__Spirochaetota|c__Spirochaetia|o__Spirochaetales|f__Treponemataceae|g__Treponema,k__Bacteria|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Faecalibacterium,k__Bacteria|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Roseburia",2|203691|203692|136|2845253|157;2|1239|186801|186802|216572|216851;2|1239|186801|3085636|186803|841,Complete,NA -bsdb:1048/119/1,Study 1048,laboratory experiment,34612701,10.1128%2FSpectrum.01387-21,https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8510183/,"Poulsen CS, Kaas RS, Aarestrup FM , Pamp SJ",Standard Sample Storage Conditions Have an Impact on Inferred Microbiome Composition and Antimicrobial Resistance Patterns,Microbiology spectrum,2021,"antimicrobial resistance, bacteria, complex samples, freezing, metagenomics, microbial community composition, microbiome, mock community, parasite, sample storage, spiking, synthetic mock community",Experiment 119,Denmark,Sus scrofa domesticus,Feces,UBERON:0001988,Microbiome,EFO:0004982,Unspiked pig feces(P2) at 16 hours (-80°C),Unspiked pig feces(P2) at 64 hours (-20°C),Unspiked P2 sample stored at a temperature of -20°C for 64 hours,1,1,NA,WMS,NA,Illumina,DESeq2,0.01,FALSE,NA,NA,NA,decreased,NA,decreased,decreased,NA,NA,Signature 1,Figure 4,27 March 2024,Aleru Divine,Aleru Divine,Differential abundance of selected highly abundant bacteria between the storage conditions in unspiked pig feces P2,increased,"k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella,k__Bacteria|p__Bacillota|c__Negativicutes|o__Acidaminococcales|f__Acidaminococcaceae|g__Phascolarctobacterium",2|976|200643|171549|171552|838;2|1239|909932|1843488|909930|33024,Complete,NA -bsdb:1048/119/2,Study 1048,laboratory experiment,34612701,10.1128%2FSpectrum.01387-21,https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8510183/,"Poulsen CS, Kaas RS, Aarestrup FM , Pamp SJ",Standard Sample Storage Conditions Have an Impact on Inferred Microbiome Composition and Antimicrobial Resistance Patterns,Microbiology spectrum,2021,"antimicrobial resistance, bacteria, complex samples, freezing, metagenomics, microbial community composition, microbiome, mock community, parasite, sample storage, spiking, synthetic mock community",Experiment 119,Denmark,Sus scrofa domesticus,Feces,UBERON:0001988,Microbiome,EFO:0004982,Unspiked pig feces(P2) at 16 hours (-80°C),Unspiked pig feces(P2) at 64 hours (-20°C),Unspiked P2 sample stored at a temperature of -20°C for 64 hours,1,1,NA,WMS,NA,Illumina,DESeq2,0.01,FALSE,NA,NA,NA,decreased,NA,decreased,decreased,NA,NA,Signature 2,Figure 4,27 March 2024,Aleru Divine,Aleru Divine,Differential abundance of selected highly abundant bacteria between the storage conditions in unspiked pig feces P2,decreased,"k__Bacteria|p__Spirochaetota|c__Spirochaetia|o__Spirochaetales|f__Treponemataceae|g__Treponema,k__Bacteria|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Faecalibacterium,k__Bacteria|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Roseburia",2|203691|203692|136|2845253|157;2|1239|186801|186802|216572|216851;2|1239|186801|3085636|186803|841,Complete,NA -bsdb:1048/120/1,Study 1048,laboratory experiment,34612701,10.1128%2FSpectrum.01387-21,https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8510183/,"Poulsen CS, Kaas RS, Aarestrup FM , Pamp SJ",Standard Sample Storage Conditions Have an Impact on Inferred Microbiome Composition and Antimicrobial Resistance Patterns,Microbiology spectrum,2021,"antimicrobial resistance, bacteria, complex samples, freezing, metagenomics, microbial community composition, microbiome, mock community, parasite, sample storage, spiking, synthetic mock community",Experiment 120,Denmark,Sus scrofa domesticus,Feces,UBERON:0001988,Microbiome,EFO:0004982,Unspiked pig feces(P2) at 16 hours (-80°C),Unspiked pig feces(P2) at 16 hours (5°C),Unspiked P2 sample stored at a temperature of 5°C for 16 hours,1,1,NA,WMS,NA,Illumina,DESeq2,0.01,FALSE,NA,NA,NA,increased,NA,decreased,increased,NA,NA,Signature 1,Figure 4,27 March 2024,Aleru Divine,Aleru Divine,Differential abundance of selected highly abundant bacteria between the storage conditions in unspiked pig feces P2,increased,"k__Bacteria|p__Spirochaetota|c__Spirochaetia|o__Spirochaetales|f__Treponemataceae|g__Treponema,k__Bacteria|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Faecalibacterium,k__Bacteria|p__Bacillota|c__Negativicutes|o__Acidaminococcales|f__Acidaminococcaceae|g__Phascolarctobacterium,k__Bacteria|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Roseburia",2|203691|203692|136|2845253|157;2|1239|186801|186802|216572|216851;2|1239|909932|1843488|909930|33024;2|1239|186801|3085636|186803|841,Complete,NA -bsdb:1048/120/2,Study 1048,laboratory experiment,34612701,10.1128%2FSpectrum.01387-21,https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8510183/,"Poulsen CS, Kaas RS, Aarestrup FM , Pamp SJ",Standard Sample Storage Conditions Have an Impact on Inferred Microbiome Composition and Antimicrobial Resistance Patterns,Microbiology spectrum,2021,"antimicrobial resistance, bacteria, complex samples, freezing, metagenomics, microbial community composition, microbiome, mock community, parasite, sample storage, spiking, synthetic mock community",Experiment 120,Denmark,Sus scrofa domesticus,Feces,UBERON:0001988,Microbiome,EFO:0004982,Unspiked pig feces(P2) at 16 hours (-80°C),Unspiked pig feces(P2) at 16 hours (5°C),Unspiked P2 sample stored at a temperature of 5°C for 16 hours,1,1,NA,WMS,NA,Illumina,DESeq2,0.01,FALSE,NA,NA,NA,increased,NA,decreased,increased,NA,NA,Signature 2,Figure 4,27 March 2024,Aleru Divine,Aleru Divine,Differential abundance of selected highly abundant bacteria between the storage conditions in unspiked pig feces P2,decreased,k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella,2|976|200643|171549|171552|838,Complete,NA -bsdb:1048/121/1,Study 1048,laboratory experiment,34612701,10.1128%2FSpectrum.01387-21,https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8510183/,"Poulsen CS, Kaas RS, Aarestrup FM , Pamp SJ",Standard Sample Storage Conditions Have an Impact on Inferred Microbiome Composition and Antimicrobial Resistance Patterns,Microbiology spectrum,2021,"antimicrobial resistance, bacteria, complex samples, freezing, metagenomics, microbial community composition, microbiome, mock community, parasite, sample storage, spiking, synthetic mock community",Experiment 121,Denmark,Sus scrofa domesticus,Feces,UBERON:0001988,Microbiome,EFO:0004982,Unspiked pig feces(P2) at 16 hours (-80°C),Unspiked pig feces(P2) at 64 hours (5°C),Unspiked P2 sample stored at a temperature of 5°C for 64 hours,1,1,NA,WMS,NA,Illumina,DESeq2,0.01,FALSE,NA,NA,NA,increased,NA,decreased,increased,NA,NA,Signature 1,Figure 4,27 March 2024,Aleru Divine,Aleru Divine,Differential abundance of selected highly abundant bacteria between the storage conditions in unspiked pig feces P2,increased,"k__Bacteria|p__Spirochaetota|c__Spirochaetia|o__Spirochaetales|f__Treponemataceae|g__Treponema,k__Bacteria|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Faecalibacterium,k__Bacteria|p__Bacillota|c__Negativicutes|o__Acidaminococcales|f__Acidaminococcaceae|g__Phascolarctobacterium,k__Bacteria|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Roseburia",2|203691|203692|136|2845253|157;2|1239|186801|186802|216572|216851;2|1239|909932|1843488|909930|33024;2|1239|186801|3085636|186803|841,Complete,NA -bsdb:1048/121/2,Study 1048,laboratory experiment,34612701,10.1128%2FSpectrum.01387-21,https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8510183/,"Poulsen CS, Kaas RS, Aarestrup FM , Pamp SJ",Standard Sample Storage Conditions Have an Impact on Inferred Microbiome Composition and Antimicrobial Resistance Patterns,Microbiology spectrum,2021,"antimicrobial resistance, bacteria, complex samples, freezing, metagenomics, microbial community composition, microbiome, mock community, parasite, sample storage, spiking, synthetic mock community",Experiment 121,Denmark,Sus scrofa domesticus,Feces,UBERON:0001988,Microbiome,EFO:0004982,Unspiked pig feces(P2) at 16 hours (-80°C),Unspiked pig feces(P2) at 64 hours (5°C),Unspiked P2 sample stored at a temperature of 5°C for 64 hours,1,1,NA,WMS,NA,Illumina,DESeq2,0.01,FALSE,NA,NA,NA,increased,NA,decreased,increased,NA,NA,Signature 2,Figure 4,27 March 2024,Aleru Divine,Aleru Divine,Differential abundance of selected highly abundant bacteria between the storage conditions in unspiked pig feces P2,decreased,k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella,2|976|200643|171549|171552|838,Complete,NA -bsdb:1048/122/1,Study 1048,laboratory experiment,34612701,10.1128%2FSpectrum.01387-21,https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8510183/,"Poulsen CS, Kaas RS, Aarestrup FM , Pamp SJ",Standard Sample Storage Conditions Have an Impact on Inferred Microbiome Composition and Antimicrobial Resistance Patterns,Microbiology spectrum,2021,"antimicrobial resistance, bacteria, complex samples, freezing, metagenomics, microbial community composition, microbiome, mock community, parasite, sample storage, spiking, synthetic mock community",Experiment 122,Denmark,Sus scrofa domesticus,Feces,UBERON:0001988,Microbiome,EFO:0004982,Unspiked pig feces(P2) at 16 hours (-80°C),Unspiked pig feces(P2) at 16 hours (22°C),Unspiked P2 sample stored at a temperature of 22°C for 16 hours,1,1,NA,WMS,NA,Illumina,DESeq2,0.01,FALSE,NA,NA,NA,increased,NA,decreased,increased,NA,NA,Signature 1,Figure 4,27 March 2024,Aleru Divine,Aleru Divine,Differential abundance of selected highly abundant bacteria between the storage conditions in unspiked pig feces P2,increased,"k__Bacteria|p__Spirochaetota|c__Spirochaetia|o__Spirochaetales|f__Treponemataceae|g__Treponema,k__Bacteria|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Faecalibacterium,k__Bacteria|p__Bacillota|c__Negativicutes|o__Acidaminococcales|f__Acidaminococcaceae|g__Phascolarctobacterium,k__Bacteria|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Roseburia",2|203691|203692|136|2845253|157;2|1239|186801|186802|216572|216851;2|1239|909932|1843488|909930|33024;2|1239|186801|3085636|186803|841,Complete,NA -bsdb:1048/122/2,Study 1048,laboratory experiment,34612701,10.1128%2FSpectrum.01387-21,https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8510183/,"Poulsen CS, Kaas RS, Aarestrup FM , Pamp SJ",Standard Sample Storage Conditions Have an Impact on Inferred Microbiome Composition and Antimicrobial Resistance Patterns,Microbiology spectrum,2021,"antimicrobial resistance, bacteria, complex samples, freezing, metagenomics, microbial community composition, microbiome, mock community, parasite, sample storage, spiking, synthetic mock community",Experiment 122,Denmark,Sus scrofa domesticus,Feces,UBERON:0001988,Microbiome,EFO:0004982,Unspiked pig feces(P2) at 16 hours (-80°C),Unspiked pig feces(P2) at 16 hours (22°C),Unspiked P2 sample stored at a temperature of 22°C for 16 hours,1,1,NA,WMS,NA,Illumina,DESeq2,0.01,FALSE,NA,NA,NA,increased,NA,decreased,increased,NA,NA,Signature 2,Figure 4,27 March 2024,Aleru Divine,Aleru Divine,Differential abundance of selected highly abundant bacteria between the storage conditions in unspiked pig feces P2,decreased,k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella,2|976|200643|171549|171552|838,Complete,NA -bsdb:1048/123/1,Study 1048,laboratory experiment,34612701,10.1128%2FSpectrum.01387-21,https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8510183/,"Poulsen CS, Kaas RS, Aarestrup FM , Pamp SJ",Standard Sample Storage Conditions Have an Impact on Inferred Microbiome Composition and Antimicrobial Resistance Patterns,Microbiology spectrum,2021,"antimicrobial resistance, bacteria, complex samples, freezing, metagenomics, microbial community composition, microbiome, mock community, parasite, sample storage, spiking, synthetic mock community",Experiment 123,Denmark,Sus scrofa domesticus,Feces,UBERON:0001988,Microbiome,EFO:0004982,Unspiked pig feces(P2) at 16 hours (-80°C),Unspiked pig feces(P2) at 64 hours (22°C),Unspiked P2 sample stored at a temperature of 22°C for 64 hours,1,1,NA,WMS,NA,Illumina,DESeq2,0.01,FALSE,NA,NA,NA,increased,NA,decreased,increased,NA,NA,Signature 1,Figure 4,27 March 2024,Aleru Divine,Aleru Divine,Differential abundance of selected highly abundant bacteria between the storage conditions in unspiked pig feces P2,increased,"k__Bacteria|p__Spirochaetota|c__Spirochaetia|o__Spirochaetales|f__Treponemataceae|g__Treponema,k__Bacteria|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Faecalibacterium,k__Bacteria|p__Bacillota|c__Negativicutes|o__Acidaminococcales|f__Acidaminococcaceae|g__Phascolarctobacterium,k__Bacteria|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Roseburia",2|203691|203692|136|2845253|157;2|1239|186801|186802|216572|216851;2|1239|909932|1843488|909930|33024;2|1239|186801|3085636|186803|841,Complete,NA -bsdb:1048/123/2,Study 1048,laboratory experiment,34612701,10.1128%2FSpectrum.01387-21,https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8510183/,"Poulsen CS, Kaas RS, Aarestrup FM , Pamp SJ",Standard Sample Storage Conditions Have an Impact on Inferred Microbiome Composition and Antimicrobial Resistance Patterns,Microbiology spectrum,2021,"antimicrobial resistance, bacteria, complex samples, freezing, metagenomics, microbial community composition, microbiome, mock community, parasite, sample storage, spiking, synthetic mock community",Experiment 123,Denmark,Sus scrofa domesticus,Feces,UBERON:0001988,Microbiome,EFO:0004982,Unspiked pig feces(P2) at 16 hours (-80°C),Unspiked pig feces(P2) at 64 hours (22°C),Unspiked P2 sample stored at a temperature of 22°C for 64 hours,1,1,NA,WMS,NA,Illumina,DESeq2,0.01,FALSE,NA,NA,NA,increased,NA,decreased,increased,NA,NA,Signature 2,Figure 4,27 March 2024,Aleru Divine,Aleru Divine,Differential abundance of selected highly abundant bacteria between the storage conditions in unspiked pig feces P2,decreased,k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella,2|976|200643|171549|171552|838,Complete,NA -bsdb:1048/124/1,Study 1048,laboratory experiment,34612701,10.1128%2FSpectrum.01387-21,https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8510183/,"Poulsen CS, Kaas RS, Aarestrup FM , Pamp SJ",Standard Sample Storage Conditions Have an Impact on Inferred Microbiome Composition and Antimicrobial Resistance Patterns,Microbiology spectrum,2021,"antimicrobial resistance, bacteria, complex samples, freezing, metagenomics, microbial community composition, microbiome, mock community, parasite, sample storage, spiking, synthetic mock community",Experiment 124,Denmark,Sus scrofa domesticus,Feces,UBERON:0001988,Microbiome,EFO:0004982,Unspiked pig feces(P2) at 64 hours (-80°C),Unspiked pig feces(P2) at 16 hours (-20°C),Unspiked P2 sample stored at a temperature of -20°C for 16 hours,1,1,NA,WMS,NA,Illumina,DESeq2,0.01,FALSE,NA,NA,NA,unchanged,NA,increased,unchanged,NA,NA,Signature 1,Figure 4,28 March 2024,Aleru Divine,Aleru Divine,Differential abundance of selected highly abundant bacteria between the storage conditions in unspiked pig feces P2,increased,"k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella,k__Bacteria|p__Spirochaetota|c__Spirochaetia|o__Spirochaetales|f__Treponemataceae|g__Treponema,k__Bacteria|p__Bacillota|c__Negativicutes|o__Acidaminococcales|f__Acidaminococcaceae|g__Phascolarctobacterium,k__Bacteria|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Roseburia",2|976|200643|171549|171552|838;2|203691|203692|136|2845253|157;2|1239|909932|1843488|909930|33024;2|1239|186801|3085636|186803|841,Complete,NA -bsdb:1048/124/2,Study 1048,laboratory experiment,34612701,10.1128%2FSpectrum.01387-21,https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8510183/,"Poulsen CS, Kaas RS, Aarestrup FM , Pamp SJ",Standard Sample Storage Conditions Have an Impact on Inferred Microbiome Composition and Antimicrobial Resistance Patterns,Microbiology spectrum,2021,"antimicrobial resistance, bacteria, complex samples, freezing, metagenomics, microbial community composition, microbiome, mock community, parasite, sample storage, spiking, synthetic mock community",Experiment 124,Denmark,Sus scrofa domesticus,Feces,UBERON:0001988,Microbiome,EFO:0004982,Unspiked pig feces(P2) at 64 hours (-80°C),Unspiked pig feces(P2) at 16 hours (-20°C),Unspiked P2 sample stored at a temperature of -20°C for 16 hours,1,1,NA,WMS,NA,Illumina,DESeq2,0.01,FALSE,NA,NA,NA,unchanged,NA,increased,unchanged,NA,NA,Signature 2,Figure 4,28 March 2024,Aleru Divine,Aleru Divine,Differential abundance of selected highly abundant bacteria between the storage conditions in unspiked pig feces P2,decreased,k__Bacteria|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Faecalibacterium,2|1239|186801|186802|216572|216851,Complete,NA -bsdb:1048/125/1,Study 1048,laboratory experiment,34612701,10.1128%2FSpectrum.01387-21,https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8510183/,"Poulsen CS, Kaas RS, Aarestrup FM , Pamp SJ",Standard Sample Storage Conditions Have an Impact on Inferred Microbiome Composition and Antimicrobial Resistance Patterns,Microbiology spectrum,2021,"antimicrobial resistance, bacteria, complex samples, freezing, metagenomics, microbial community composition, microbiome, mock community, parasite, sample storage, spiking, synthetic mock community",Experiment 125,Denmark,Sus scrofa domesticus,Feces,UBERON:0001988,Microbiome,EFO:0004982,Unspiked pig feces(P2) at 64 hours (-80°C),Unspiked pig feces(P2) at 64 hours (-20°C),Unspiked P2 sample stored at a temperature of -20°C for 64 hours,1,1,NA,WMS,NA,Illumina,DESeq2,0.01,FALSE,NA,NA,NA,unchanged,NA,decreased,decreased,NA,NA,Signature 1,Figure 4,28 March 2024,Aleru Divine,Aleru Divine,Differential abundance of selected highly abundant bacteria between the storage conditions in unspiked pig feces P2,increased,"k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella,k__Bacteria|p__Spirochaetota|c__Spirochaetia|o__Spirochaetales|f__Treponemataceae|g__Treponema,k__Bacteria|p__Bacillota|c__Negativicutes|o__Acidaminococcales|f__Acidaminococcaceae|g__Phascolarctobacterium",2|976|200643|171549|171552|838;2|203691|203692|136|2845253|157;2|1239|909932|1843488|909930|33024,Complete,NA -bsdb:1048/125/2,Study 1048,laboratory experiment,34612701,10.1128%2FSpectrum.01387-21,https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8510183/,"Poulsen CS, Kaas RS, Aarestrup FM , Pamp SJ",Standard Sample Storage Conditions Have an Impact on Inferred Microbiome Composition and Antimicrobial Resistance Patterns,Microbiology spectrum,2021,"antimicrobial resistance, bacteria, complex samples, freezing, metagenomics, microbial community composition, microbiome, mock community, parasite, sample storage, spiking, synthetic mock community",Experiment 125,Denmark,Sus scrofa domesticus,Feces,UBERON:0001988,Microbiome,EFO:0004982,Unspiked pig feces(P2) at 64 hours (-80°C),Unspiked pig feces(P2) at 64 hours (-20°C),Unspiked P2 sample stored at a temperature of -20°C for 64 hours,1,1,NA,WMS,NA,Illumina,DESeq2,0.01,FALSE,NA,NA,NA,unchanged,NA,decreased,decreased,NA,NA,Signature 2,Figure 4,28 March 2024,Aleru Divine,Aleru Divine,Differential abundance of selected highly abundant bacteria between the storage conditions in unspiked pig feces P2,decreased,"k__Bacteria|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Faecalibacterium,k__Bacteria|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Roseburia",2|1239|186801|186802|216572|216851;2|1239|186801|3085636|186803|841,Complete,NA -bsdb:1048/126/1,Study 1048,laboratory experiment,34612701,10.1128%2FSpectrum.01387-21,https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8510183/,"Poulsen CS, Kaas RS, Aarestrup FM , Pamp SJ",Standard Sample Storage Conditions Have an Impact on Inferred Microbiome Composition and Antimicrobial Resistance Patterns,Microbiology spectrum,2021,"antimicrobial resistance, bacteria, complex samples, freezing, metagenomics, microbial community composition, microbiome, mock community, parasite, sample storage, spiking, synthetic mock community",Experiment 126,Denmark,Sus scrofa domesticus,Feces,UBERON:0001988,Microbiome,EFO:0004982,Unspiked pig feces(P2) at 64 hours (-80°C),Unspiked pig feces(P2) at 16 hours (5°C),Unspiked P2 sample stored at a temperature of 5°C for 16 hours,1,1,NA,WMS,NA,Illumina,DESeq2,0.01,FALSE,NA,NA,NA,increased,NA,decreased,increased,NA,NA,Signature 1,Figure 4,28 March 2024,Aleru Divine,Aleru Divine,Differential abundance of selected highly abundant bacteria between the storage conditions in unspiked pig feces P2,increased,"k__Bacteria|p__Spirochaetota|c__Spirochaetia|o__Spirochaetales|f__Treponemataceae|g__Treponema,k__Bacteria|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Faecalibacterium,k__Bacteria|p__Bacillota|c__Negativicutes|o__Acidaminococcales|f__Acidaminococcaceae|g__Phascolarctobacterium,k__Bacteria|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Roseburia",2|203691|203692|136|2845253|157;2|1239|186801|186802|216572|216851;2|1239|909932|1843488|909930|33024;2|1239|186801|3085636|186803|841,Complete,NA -bsdb:1048/126/2,Study 1048,laboratory experiment,34612701,10.1128%2FSpectrum.01387-21,https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8510183/,"Poulsen CS, Kaas RS, Aarestrup FM , Pamp SJ",Standard Sample Storage Conditions Have an Impact on Inferred Microbiome Composition and Antimicrobial Resistance Patterns,Microbiology spectrum,2021,"antimicrobial resistance, bacteria, complex samples, freezing, metagenomics, microbial community composition, microbiome, mock community, parasite, sample storage, spiking, synthetic mock community",Experiment 126,Denmark,Sus scrofa domesticus,Feces,UBERON:0001988,Microbiome,EFO:0004982,Unspiked pig feces(P2) at 64 hours (-80°C),Unspiked pig feces(P2) at 16 hours (5°C),Unspiked P2 sample stored at a temperature of 5°C for 16 hours,1,1,NA,WMS,NA,Illumina,DESeq2,0.01,FALSE,NA,NA,NA,increased,NA,decreased,increased,NA,NA,Signature 2,Figure 4,28 March 2024,Aleru Divine,Aleru Divine,Differential abundance of selected highly abundant bacteria between the storage conditions in unspiked pig feces P2,decreased,k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella,2|976|200643|171549|171552|838,Complete,NA -bsdb:1048/127/1,Study 1048,laboratory experiment,34612701,10.1128%2FSpectrum.01387-21,https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8510183/,"Poulsen CS, Kaas RS, Aarestrup FM , Pamp SJ",Standard Sample Storage Conditions Have an Impact on Inferred Microbiome Composition and Antimicrobial Resistance Patterns,Microbiology spectrum,2021,"antimicrobial resistance, bacteria, complex samples, freezing, metagenomics, microbial community composition, microbiome, mock community, parasite, sample storage, spiking, synthetic mock community",Experiment 127,Denmark,Sus scrofa domesticus,Feces,UBERON:0001988,Microbiome,EFO:0004982,Unspiked pig feces(P2) at 64 hours (-80°C),Unspiked pig feces(P2) at 64 hours (5°C),Unspiked P2 sample stored at a temperature of 5°C for 64 hours,1,1,NA,WMS,NA,Illumina,DESeq2,0.01,FALSE,NA,NA,NA,increased,NA,decreased,increased,NA,NA,Signature 1,Figure 4,28 March 2024,Aleru Divine,Aleru Divine,Differential abundance of selected highly abundant bacteria between the storage conditions in unspiked pig feces P2,increased,"k__Bacteria|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Faecalibacterium,k__Bacteria|p__Bacillota|c__Negativicutes|o__Acidaminococcales|f__Acidaminococcaceae|g__Phascolarctobacterium,k__Bacteria|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Roseburia,k__Bacteria|p__Spirochaetota|c__Spirochaetia|o__Spirochaetales|f__Treponemataceae|g__Treponema",2|1239|186801|186802|216572|216851;2|1239|909932|1843488|909930|33024;2|1239|186801|3085636|186803|841;2|203691|203692|136|2845253|157,Complete,NA -bsdb:1048/127/2,Study 1048,laboratory experiment,34612701,10.1128%2FSpectrum.01387-21,https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8510183/,"Poulsen CS, Kaas RS, Aarestrup FM , Pamp SJ",Standard Sample Storage Conditions Have an Impact on Inferred Microbiome Composition and Antimicrobial Resistance Patterns,Microbiology spectrum,2021,"antimicrobial resistance, bacteria, complex samples, freezing, metagenomics, microbial community composition, microbiome, mock community, parasite, sample storage, spiking, synthetic mock community",Experiment 127,Denmark,Sus scrofa domesticus,Feces,UBERON:0001988,Microbiome,EFO:0004982,Unspiked pig feces(P2) at 64 hours (-80°C),Unspiked pig feces(P2) at 64 hours (5°C),Unspiked P2 sample stored at a temperature of 5°C for 64 hours,1,1,NA,WMS,NA,Illumina,DESeq2,0.01,FALSE,NA,NA,NA,increased,NA,decreased,increased,NA,NA,Signature 2,Figure 4,29 March 2024,Aleru Divine,Aleru Divine,Differential abundance of selected highly abundant bacteria between the storage conditions in unspiked pig feces P2,decreased,k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella,2|976|200643|171549|171552|838,Complete,NA -bsdb:1048/128/1,Study 1048,laboratory experiment,34612701,10.1128%2FSpectrum.01387-21,https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8510183/,"Poulsen CS, Kaas RS, Aarestrup FM , Pamp SJ",Standard Sample Storage Conditions Have an Impact on Inferred Microbiome Composition and Antimicrobial Resistance Patterns,Microbiology spectrum,2021,"antimicrobial resistance, bacteria, complex samples, freezing, metagenomics, microbial community composition, microbiome, mock community, parasite, sample storage, spiking, synthetic mock community",Experiment 128,Denmark,Sus scrofa domesticus,Feces,UBERON:0001988,Microbiome,EFO:0004982,Unspiked pig feces(P2) at 64 hours (-80°C),Unspiked pig feces(P2) at 16 hours (22°C),Unspiked P2 sample stored at a temperature of 22°C for 16 hours,1,1,NA,WMS,NA,Illumina,DESeq2,0.01,FALSE,NA,NA,NA,increased,NA,increased,increased,NA,NA,Signature 1,Figure 4,29 March 2024,Aleru Divine,Aleru Divine,Differential abundance of selected highly abundant bacteria between the storage conditions in unspiked pig feces P2.,increased,"k__Bacteria|p__Spirochaetota|c__Spirochaetia|o__Spirochaetales|f__Treponemataceae|g__Treponema,k__Bacteria|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Faecalibacterium,k__Bacteria|p__Bacillota|c__Negativicutes|o__Acidaminococcales|f__Acidaminococcaceae|g__Phascolarctobacterium,k__Bacteria|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Roseburia",2|203691|203692|136|2845253|157;2|1239|186801|186802|216572|216851;2|1239|909932|1843488|909930|33024;2|1239|186801|3085636|186803|841,Complete,NA -bsdb:1048/128/2,Study 1048,laboratory experiment,34612701,10.1128%2FSpectrum.01387-21,https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8510183/,"Poulsen CS, Kaas RS, Aarestrup FM , Pamp SJ",Standard Sample Storage Conditions Have an Impact on Inferred Microbiome Composition and Antimicrobial Resistance Patterns,Microbiology spectrum,2021,"antimicrobial resistance, bacteria, complex samples, freezing, metagenomics, microbial community composition, microbiome, mock community, parasite, sample storage, spiking, synthetic mock community",Experiment 128,Denmark,Sus scrofa domesticus,Feces,UBERON:0001988,Microbiome,EFO:0004982,Unspiked pig feces(P2) at 64 hours (-80°C),Unspiked pig feces(P2) at 16 hours (22°C),Unspiked P2 sample stored at a temperature of 22°C for 16 hours,1,1,NA,WMS,NA,Illumina,DESeq2,0.01,FALSE,NA,NA,NA,increased,NA,increased,increased,NA,NA,Signature 2,Figure 4,29 March 2024,Aleru Divine,Aleru Divine,Differential abundance of selected highly abundant bacteria between the storage conditions in unspiked pig feces P2,decreased,k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella,2|976|200643|171549|171552|838,Complete,NA -bsdb:1048/129/1,Study 1048,laboratory experiment,34612701,10.1128%2FSpectrum.01387-21,https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8510183/,"Poulsen CS, Kaas RS, Aarestrup FM , Pamp SJ",Standard Sample Storage Conditions Have an Impact on Inferred Microbiome Composition and Antimicrobial Resistance Patterns,Microbiology spectrum,2021,"antimicrobial resistance, bacteria, complex samples, freezing, metagenomics, microbial community composition, microbiome, mock community, parasite, sample storage, spiking, synthetic mock community",Experiment 129,Denmark,Sus scrofa domesticus,Feces,UBERON:0001988,Microbiome,EFO:0004982,Unspiked pig feces(P2) at 64 hours (-80°C),Unspiked pig feces(P2) at 64 hours (22°C),Unspiked P2 sample stored at a temperature of 22°C for 64 hours,1,1,NA,WMS,NA,Illumina,DESeq2,0.01,FALSE,NA,NA,NA,increased,NA,decreased,increased,NA,NA,Signature 1,Figure 4,29 March 2024,Aleru Divine,Aleru Divine,Differential abundance of selected highly abundant bacteria between the storage conditions in unspiked pig feces P2,increased,"k__Bacteria|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Faecalibacterium,k__Bacteria|p__Bacillota|c__Negativicutes|o__Acidaminococcales|f__Acidaminococcaceae|g__Phascolarctobacterium,k__Bacteria|p__Spirochaetota|c__Spirochaetia|o__Spirochaetales|f__Treponemataceae|g__Treponema,k__Bacteria|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Roseburia",2|1239|186801|186802|216572|216851;2|1239|909932|1843488|909930|33024;2|203691|203692|136|2845253|157;2|1239|186801|3085636|186803|841,Complete,NA -bsdb:1048/129/2,Study 1048,laboratory experiment,34612701,10.1128%2FSpectrum.01387-21,https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8510183/,"Poulsen CS, Kaas RS, Aarestrup FM , Pamp SJ",Standard Sample Storage Conditions Have an Impact on Inferred Microbiome Composition and Antimicrobial Resistance Patterns,Microbiology spectrum,2021,"antimicrobial resistance, bacteria, complex samples, freezing, metagenomics, microbial community composition, microbiome, mock community, parasite, sample storage, spiking, synthetic mock community",Experiment 129,Denmark,Sus scrofa domesticus,Feces,UBERON:0001988,Microbiome,EFO:0004982,Unspiked pig feces(P2) at 64 hours (-80°C),Unspiked pig feces(P2) at 64 hours (22°C),Unspiked P2 sample stored at a temperature of 22°C for 64 hours,1,1,NA,WMS,NA,Illumina,DESeq2,0.01,FALSE,NA,NA,NA,increased,NA,decreased,increased,NA,NA,Signature 2,Figure 4,29 March 2024,Aleru Divine,Aleru Divine,Differential abundance of selected highly abundant bacteria between the storage conditions in unspiked pig feces P2,decreased,k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella,2|976|200643|171549|171552|838,Complete,NA -bsdb:1048/130/1,Study 1048,laboratory experiment,34612701,10.1128%2FSpectrum.01387-21,https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8510183/,"Poulsen CS, Kaas RS, Aarestrup FM , Pamp SJ",Standard Sample Storage Conditions Have an Impact on Inferred Microbiome Composition and Antimicrobial Resistance Patterns,Microbiology spectrum,2021,"antimicrobial resistance, bacteria, complex samples, freezing, metagenomics, microbial community composition, microbiome, mock community, parasite, sample storage, spiking, synthetic mock community",Experiment 130,Denmark,Sus scrofa domesticus,Feces,UBERON:0001988,Microbiome,EFO:0004982,Unspiked pig feces(P2) at 16 hours (-20°C),Unspiked pig feces(P2) at 64 hours (-20°C),Unspiked P2 sample stored at a temperature of -20°C for 64 hours,1,1,NA,WMS,NA,Illumina,DESeq2,0.01,FALSE,NA,NA,NA,increased,NA,decreased,decreased,NA,NA,Signature 1,Figure 4,29 March 2024,Aleru Divine,Aleru Divine,Differential abundance of selected highly abundant bacteria between the storage conditions in unspiked pig feces P2,increased,k__Bacteria|p__Bacillota|c__Negativicutes|o__Acidaminococcales|f__Acidaminococcaceae|g__Phascolarctobacterium,2|1239|909932|1843488|909930|33024,Complete,NA -bsdb:1048/130/2,Study 1048,laboratory experiment,34612701,10.1128%2FSpectrum.01387-21,https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8510183/,"Poulsen CS, Kaas RS, Aarestrup FM , Pamp SJ",Standard Sample Storage Conditions Have an Impact on Inferred Microbiome Composition and Antimicrobial Resistance Patterns,Microbiology spectrum,2021,"antimicrobial resistance, bacteria, complex samples, freezing, metagenomics, microbial community composition, microbiome, mock community, parasite, sample storage, spiking, synthetic mock community",Experiment 130,Denmark,Sus scrofa domesticus,Feces,UBERON:0001988,Microbiome,EFO:0004982,Unspiked pig feces(P2) at 16 hours (-20°C),Unspiked pig feces(P2) at 64 hours (-20°C),Unspiked P2 sample stored at a temperature of -20°C for 64 hours,1,1,NA,WMS,NA,Illumina,DESeq2,0.01,FALSE,NA,NA,NA,increased,NA,decreased,decreased,NA,NA,Signature 2,Figure 4,29 March 2024,Aleru Divine,Aleru Divine,Differential abundance of selected highly abundant bacteria between the storage conditions in unspiked pig feces P2,decreased,"k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella,k__Bacteria|p__Spirochaetota|c__Spirochaetia|o__Spirochaetales|f__Treponemataceae|g__Treponema,k__Bacteria|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Faecalibacterium,k__Bacteria|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Roseburia",2|976|200643|171549|171552|838;2|203691|203692|136|2845253|157;2|1239|186801|186802|216572|216851;2|1239|186801|3085636|186803|841,Complete,NA -bsdb:1048/131/1,Study 1048,laboratory experiment,34612701,10.1128%2FSpectrum.01387-21,https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8510183/,"Poulsen CS, Kaas RS, Aarestrup FM , Pamp SJ",Standard Sample Storage Conditions Have an Impact on Inferred Microbiome Composition and Antimicrobial Resistance Patterns,Microbiology spectrum,2021,"antimicrobial resistance, bacteria, complex samples, freezing, metagenomics, microbial community composition, microbiome, mock community, parasite, sample storage, spiking, synthetic mock community",Experiment 131,Denmark,Sus scrofa domesticus,Feces,UBERON:0001988,Microbiome,EFO:0004982,Unspiked pig feces(P2) at 16 hours (-20°C),Unspiked pig feces(P2) at 16 hours (5°C),Unspiked P2 sample stored at a temperature of 5°C for 16 hours,1,1,NA,WMS,NA,Illumina,DESeq2,0.01,FALSE,NA,NA,NA,increased,NA,decreased,increased,NA,NA,Signature 1,Figure 4,29 March 2024,Aleru Divine,Aleru Divine,Differential abundance of selected highly abundant bacteria between the storage conditions in unspiked pig feces P2,increased,"k__Bacteria|p__Spirochaetota|c__Spirochaetia|o__Spirochaetales|f__Treponemataceae|g__Treponema,k__Bacteria|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Faecalibacterium,k__Bacteria|p__Bacillota|c__Negativicutes|o__Acidaminococcales|f__Acidaminococcaceae|g__Phascolarctobacterium,k__Bacteria|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Roseburia",2|203691|203692|136|2845253|157;2|1239|186801|186802|216572|216851;2|1239|909932|1843488|909930|33024;2|1239|186801|3085636|186803|841,Complete,NA -bsdb:1048/131/2,Study 1048,laboratory experiment,34612701,10.1128%2FSpectrum.01387-21,https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8510183/,"Poulsen CS, Kaas RS, Aarestrup FM , Pamp SJ",Standard Sample Storage Conditions Have an Impact on Inferred Microbiome Composition and Antimicrobial Resistance Patterns,Microbiology spectrum,2021,"antimicrobial resistance, bacteria, complex samples, freezing, metagenomics, microbial community composition, microbiome, mock community, parasite, sample storage, spiking, synthetic mock community",Experiment 131,Denmark,Sus scrofa domesticus,Feces,UBERON:0001988,Microbiome,EFO:0004982,Unspiked pig feces(P2) at 16 hours (-20°C),Unspiked pig feces(P2) at 16 hours (5°C),Unspiked P2 sample stored at a temperature of 5°C for 16 hours,1,1,NA,WMS,NA,Illumina,DESeq2,0.01,FALSE,NA,NA,NA,increased,NA,decreased,increased,NA,NA,Signature 2,Figure 4,29 March 2024,Aleru Divine,Aleru Divine,Differential abundance of selected highly abundant bacteria between the storage conditions in unspiked pig feces P2,decreased,k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella,2|976|200643|171549|171552|838,Complete,NA -bsdb:1048/132/1,Study 1048,laboratory experiment,34612701,10.1128%2FSpectrum.01387-21,https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8510183/,"Poulsen CS, Kaas RS, Aarestrup FM , Pamp SJ",Standard Sample Storage Conditions Have an Impact on Inferred Microbiome Composition and Antimicrobial Resistance Patterns,Microbiology spectrum,2021,"antimicrobial resistance, bacteria, complex samples, freezing, metagenomics, microbial community composition, microbiome, mock community, parasite, sample storage, spiking, synthetic mock community",Experiment 132,Denmark,Sus scrofa domesticus,Feces,UBERON:0001988,Microbiome,EFO:0004982,Unspiked pig feces(P2) at 16 hours (-20°C),Unspiked pig feces(P2) at 64 hours (5°C),Unspiked P2 sample stored at a temperature of 5°C for 64 hours,1,1,NA,WMS,NA,Illumina,DESeq2,0.01,FALSE,NA,NA,NA,increased,NA,decreased,increased,NA,NA,Signature 1,Figure 4,29 March 2024,Aleru Divine,Aleru Divine,Differential abundance of selected highly abundant bacteria between the storage conditions in unspiked pig feces P2,increased,"k__Bacteria|p__Spirochaetota|c__Spirochaetia|o__Spirochaetales|f__Treponemataceae|g__Treponema,k__Bacteria|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Faecalibacterium,k__Bacteria|p__Bacillota|c__Negativicutes|o__Acidaminococcales|f__Acidaminococcaceae|g__Phascolarctobacterium,k__Bacteria|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Roseburia",2|203691|203692|136|2845253|157;2|1239|186801|186802|216572|216851;2|1239|909932|1843488|909930|33024;2|1239|186801|3085636|186803|841,Complete,NA -bsdb:1048/132/2,Study 1048,laboratory experiment,34612701,10.1128%2FSpectrum.01387-21,https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8510183/,"Poulsen CS, Kaas RS, Aarestrup FM , Pamp SJ",Standard Sample Storage Conditions Have an Impact on Inferred Microbiome Composition and Antimicrobial Resistance Patterns,Microbiology spectrum,2021,"antimicrobial resistance, bacteria, complex samples, freezing, metagenomics, microbial community composition, microbiome, mock community, parasite, sample storage, spiking, synthetic mock community",Experiment 132,Denmark,Sus scrofa domesticus,Feces,UBERON:0001988,Microbiome,EFO:0004982,Unspiked pig feces(P2) at 16 hours (-20°C),Unspiked pig feces(P2) at 64 hours (5°C),Unspiked P2 sample stored at a temperature of 5°C for 64 hours,1,1,NA,WMS,NA,Illumina,DESeq2,0.01,FALSE,NA,NA,NA,increased,NA,decreased,increased,NA,NA,Signature 2,Figure 4,29 March 2024,Aleru Divine,Aleru Divine,Differential abundance of selected highly abundant bacteria between the storage conditions in unspiked pig feces P2,decreased,k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella,2|976|200643|171549|171552|838,Complete,NA -bsdb:1048/133/1,Study 1048,laboratory experiment,34612701,10.1128%2FSpectrum.01387-21,https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8510183/,"Poulsen CS, Kaas RS, Aarestrup FM , Pamp SJ",Standard Sample Storage Conditions Have an Impact on Inferred Microbiome Composition and Antimicrobial Resistance Patterns,Microbiology spectrum,2021,"antimicrobial resistance, bacteria, complex samples, freezing, metagenomics, microbial community composition, microbiome, mock community, parasite, sample storage, spiking, synthetic mock community",Experiment 133,Denmark,Sus scrofa domesticus,Feces,UBERON:0001988,Microbiome,EFO:0004982,Unspiked pig feces(P2) at 16 hours (-20°C),Unspiked pig feces(P2) at 16 hours (22°C),Unspiked P2 sample stored at a temperature of 22°C for 16 hours,1,1,NA,WMS,NA,Illumina,DESeq2,0.01,FALSE,NA,NA,NA,increased,NA,decreased,increased,NA,NA,Signature 1,Figure 4,29 March 2024,Aleru Divine,Aleru Divine,Differential abundance of selected highly abundant bacteria between the storage conditions in unspiked pig feces P2,increased,"k__Bacteria|p__Spirochaetota|c__Spirochaetia|o__Spirochaetales|f__Treponemataceae|g__Treponema,k__Bacteria|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Faecalibacterium,k__Bacteria|p__Bacillota|c__Negativicutes|o__Acidaminococcales|f__Acidaminococcaceae|g__Phascolarctobacterium,k__Bacteria|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Roseburia",2|203691|203692|136|2845253|157;2|1239|186801|186802|216572|216851;2|1239|909932|1843488|909930|33024;2|1239|186801|3085636|186803|841,Complete,NA -bsdb:1048/133/2,Study 1048,laboratory experiment,34612701,10.1128%2FSpectrum.01387-21,https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8510183/,"Poulsen CS, Kaas RS, Aarestrup FM , Pamp SJ",Standard Sample Storage Conditions Have an Impact on Inferred Microbiome Composition and Antimicrobial Resistance Patterns,Microbiology spectrum,2021,"antimicrobial resistance, bacteria, complex samples, freezing, metagenomics, microbial community composition, microbiome, mock community, parasite, sample storage, spiking, synthetic mock community",Experiment 133,Denmark,Sus scrofa domesticus,Feces,UBERON:0001988,Microbiome,EFO:0004982,Unspiked pig feces(P2) at 16 hours (-20°C),Unspiked pig feces(P2) at 16 hours (22°C),Unspiked P2 sample stored at a temperature of 22°C for 16 hours,1,1,NA,WMS,NA,Illumina,DESeq2,0.01,FALSE,NA,NA,NA,increased,NA,decreased,increased,NA,NA,Signature 2,Figure 4,29 March 2024,Aleru Divine,Aleru Divine,Differential abundance of selected highly abundant bacteria between the storage conditions in unspiked pig feces P2,decreased,k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella,2|976|200643|171549|171552|838,Complete,NA -bsdb:1048/134/1,Study 1048,laboratory experiment,34612701,10.1128%2FSpectrum.01387-21,https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8510183/,"Poulsen CS, Kaas RS, Aarestrup FM , Pamp SJ",Standard Sample Storage Conditions Have an Impact on Inferred Microbiome Composition and Antimicrobial Resistance Patterns,Microbiology spectrum,2021,"antimicrobial resistance, bacteria, complex samples, freezing, metagenomics, microbial community composition, microbiome, mock community, parasite, sample storage, spiking, synthetic mock community",Experiment 134,Denmark,Sus scrofa domesticus,Feces,UBERON:0001988,Microbiome,EFO:0004982,Unspiked pig feces(P2) at 16 hours (-20°C),Unspiked pig feces(P2) at 64 hours (22°C),Unspiked P2 sample stored at a temperature of 22°C for 64 hours,1,1,NA,WMS,NA,Illumina,DESeq2,0.01,FALSE,NA,NA,NA,increased,NA,decreased,increased,NA,NA,Signature 1,Figure 4,29 March 2024,Aleru Divine,Aleru Divine,Differential abundance of selected highly abundant bacteria between the storage conditions in unspiked pig feces P2,increased,"k__Bacteria|p__Spirochaetota|c__Spirochaetia|o__Spirochaetales|f__Treponemataceae|g__Treponema,k__Bacteria|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Faecalibacterium,k__Bacteria|p__Bacillota|c__Negativicutes|o__Acidaminococcales|f__Acidaminococcaceae|g__Phascolarctobacterium,k__Bacteria|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Roseburia",2|203691|203692|136|2845253|157;2|1239|186801|186802|216572|216851;2|1239|909932|1843488|909930|33024;2|1239|186801|3085636|186803|841,Complete,NA -bsdb:1048/134/2,Study 1048,laboratory experiment,34612701,10.1128%2FSpectrum.01387-21,https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8510183/,"Poulsen CS, Kaas RS, Aarestrup FM , Pamp SJ",Standard Sample Storage Conditions Have an Impact on Inferred Microbiome Composition and Antimicrobial Resistance Patterns,Microbiology spectrum,2021,"antimicrobial resistance, bacteria, complex samples, freezing, metagenomics, microbial community composition, microbiome, mock community, parasite, sample storage, spiking, synthetic mock community",Experiment 134,Denmark,Sus scrofa domesticus,Feces,UBERON:0001988,Microbiome,EFO:0004982,Unspiked pig feces(P2) at 16 hours (-20°C),Unspiked pig feces(P2) at 64 hours (22°C),Unspiked P2 sample stored at a temperature of 22°C for 64 hours,1,1,NA,WMS,NA,Illumina,DESeq2,0.01,FALSE,NA,NA,NA,increased,NA,decreased,increased,NA,NA,Signature 2,Figure 4,29 March 2024,Aleru Divine,Aleru Divine,Differential abundance of selected highly abundant bacteria between the storage conditions in unspiked pig feces P2,decreased,k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella,2|976|200643|171549|171552|838,Complete,NA -bsdb:1048/135/1,Study 1048,laboratory experiment,34612701,10.1128%2FSpectrum.01387-21,https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8510183/,"Poulsen CS, Kaas RS, Aarestrup FM , Pamp SJ",Standard Sample Storage Conditions Have an Impact on Inferred Microbiome Composition and Antimicrobial Resistance Patterns,Microbiology spectrum,2021,"antimicrobial resistance, bacteria, complex samples, freezing, metagenomics, microbial community composition, microbiome, mock community, parasite, sample storage, spiking, synthetic mock community",Experiment 135,Denmark,Sus scrofa domesticus,Feces,UBERON:0001988,Microbiome,EFO:0004982,Unspiked pig feces(P2) at 64 hours (-20°C),Unspiked pig feces(P2) at 16 hours (5°C),Unspiked P2 sample stored at a temperature of 5°C for 16 hours,1,1,NA,WMS,NA,Illumina,DESeq2,0.01,FALSE,NA,NA,NA,increased,NA,increased,increased,NA,NA,Signature 1,Figure 4,30 March 2024,Aleru Divine,Aleru Divine,Differential abundance of selected highly abundant bacteria between the storage conditions in unspiked pig feces P2,increased,"k__Bacteria|p__Spirochaetota|c__Spirochaetia|o__Spirochaetales|f__Treponemataceae|g__Treponema,k__Bacteria|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Faecalibacterium,k__Bacteria|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Roseburia",2|203691|203692|136|2845253|157;2|1239|186801|186802|216572|216851;2|1239|186801|3085636|186803|841,Complete,NA -bsdb:1048/135/2,Study 1048,laboratory experiment,34612701,10.1128%2FSpectrum.01387-21,https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8510183/,"Poulsen CS, Kaas RS, Aarestrup FM , Pamp SJ",Standard Sample Storage Conditions Have an Impact on Inferred Microbiome Composition and Antimicrobial Resistance Patterns,Microbiology spectrum,2021,"antimicrobial resistance, bacteria, complex samples, freezing, metagenomics, microbial community composition, microbiome, mock community, parasite, sample storage, spiking, synthetic mock community",Experiment 135,Denmark,Sus scrofa domesticus,Feces,UBERON:0001988,Microbiome,EFO:0004982,Unspiked pig feces(P2) at 64 hours (-20°C),Unspiked pig feces(P2) at 16 hours (5°C),Unspiked P2 sample stored at a temperature of 5°C for 16 hours,1,1,NA,WMS,NA,Illumina,DESeq2,0.01,FALSE,NA,NA,NA,increased,NA,increased,increased,NA,NA,Signature 2,Figure 4,30 March 2024,Aleru Divine,Aleru Divine,Differential abundance of selected highly abundant bacteria between the storage conditions in unspiked pig feces P2,decreased,"k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella,k__Bacteria|p__Bacillota|c__Negativicutes|o__Acidaminococcales|f__Acidaminococcaceae|g__Phascolarctobacterium",2|976|200643|171549|171552|838;2|1239|909932|1843488|909930|33024,Complete,NA -bsdb:1048/136/1,Study 1048,laboratory experiment,34612701,10.1128%2FSpectrum.01387-21,https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8510183/,"Poulsen CS, Kaas RS, Aarestrup FM , Pamp SJ",Standard Sample Storage Conditions Have an Impact on Inferred Microbiome Composition and Antimicrobial Resistance Patterns,Microbiology spectrum,2021,"antimicrobial resistance, bacteria, complex samples, freezing, metagenomics, microbial community composition, microbiome, mock community, parasite, sample storage, spiking, synthetic mock community",Experiment 136,Denmark,Sus scrofa domesticus,Feces,UBERON:0001988,Microbiome,EFO:0004982,Unspiked pig feces(P2) at 64 hours (-20°C),Unspiked pig feces(P2) at 64 hours (5°C),Unspiked P2 sample stored at a temperature of 5°C for 64 hours,1,1,NA,WMS,NA,Illumina,DESeq2,0.01,FALSE,NA,NA,NA,increased,NA,increased,increased,NA,NA,Signature 1,Figure 4,30 March 2024,Aleru Divine,Aleru Divine,Differential abundance of selected highly abundant bacteria between the storage conditions in unspiked pig feces P2,increased,"k__Bacteria|p__Spirochaetota|c__Spirochaetia|o__Spirochaetales|f__Treponemataceae|g__Treponema,k__Bacteria|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Faecalibacterium,k__Bacteria|p__Bacillota|c__Negativicutes|o__Acidaminococcales|f__Acidaminococcaceae|g__Phascolarctobacterium,k__Bacteria|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Roseburia",2|203691|203692|136|2845253|157;2|1239|186801|186802|216572|216851;2|1239|909932|1843488|909930|33024;2|1239|186801|3085636|186803|841,Complete,NA -bsdb:1048/136/2,Study 1048,laboratory experiment,34612701,10.1128%2FSpectrum.01387-21,https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8510183/,"Poulsen CS, Kaas RS, Aarestrup FM , Pamp SJ",Standard Sample Storage Conditions Have an Impact on Inferred Microbiome Composition and Antimicrobial Resistance Patterns,Microbiology spectrum,2021,"antimicrobial resistance, bacteria, complex samples, freezing, metagenomics, microbial community composition, microbiome, mock community, parasite, sample storage, spiking, synthetic mock community",Experiment 136,Denmark,Sus scrofa domesticus,Feces,UBERON:0001988,Microbiome,EFO:0004982,Unspiked pig feces(P2) at 64 hours (-20°C),Unspiked pig feces(P2) at 64 hours (5°C),Unspiked P2 sample stored at a temperature of 5°C for 64 hours,1,1,NA,WMS,NA,Illumina,DESeq2,0.01,FALSE,NA,NA,NA,increased,NA,increased,increased,NA,NA,Signature 2,Figure 4,30 March 2024,Aleru Divine,Aleru Divine,Differential abundance of selected highly abundant bacteria between the storage conditions in unspiked pig feces P2,decreased,k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella,2|976|200643|171549|171552|838,Complete,NA -bsdb:1048/137/1,Study 1048,laboratory experiment,34612701,10.1128%2FSpectrum.01387-21,https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8510183/,"Poulsen CS, Kaas RS, Aarestrup FM , Pamp SJ",Standard Sample Storage Conditions Have an Impact on Inferred Microbiome Composition and Antimicrobial Resistance Patterns,Microbiology spectrum,2021,"antimicrobial resistance, bacteria, complex samples, freezing, metagenomics, microbial community composition, microbiome, mock community, parasite, sample storage, spiking, synthetic mock community",Experiment 137,Denmark,Sus scrofa domesticus,Feces,UBERON:0001988,Microbiome,EFO:0004982,Unspiked pig feces(P2) at 64 hours (-20°C),Unspiked pig feces(P2) at 16 hours (22°C),Unspiked P2 sample stored at a temperature of 22°C for 16 hours,1,1,NA,WMS,NA,Illumina,DESeq2,0.01,FALSE,NA,NA,NA,increased,NA,increased,increased,NA,NA,Signature 1,Figure 4,30 March 2024,Aleru Divine,Aleru Divine,Differential abundance of selected highly abundant bacteria between the storage conditions in unspiked pig feces P2,increased,"k__Bacteria|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Faecalibacterium,k__Bacteria|p__Spirochaetota|c__Spirochaetia|o__Spirochaetales|f__Treponemataceae|g__Treponema,k__Bacteria|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Roseburia,k__Bacteria|p__Bacillota|c__Negativicutes|o__Acidaminococcales|f__Acidaminococcaceae|g__Phascolarctobacterium",2|1239|186801|186802|216572|216851;2|203691|203692|136|2845253|157;2|1239|186801|3085636|186803|841;2|1239|909932|1843488|909930|33024,Complete,NA -bsdb:1048/137/2,Study 1048,laboratory experiment,34612701,10.1128%2FSpectrum.01387-21,https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8510183/,"Poulsen CS, Kaas RS, Aarestrup FM , Pamp SJ",Standard Sample Storage Conditions Have an Impact on Inferred Microbiome Composition and Antimicrobial Resistance Patterns,Microbiology spectrum,2021,"antimicrobial resistance, bacteria, complex samples, freezing, metagenomics, microbial community composition, microbiome, mock community, parasite, sample storage, spiking, synthetic mock community",Experiment 137,Denmark,Sus scrofa domesticus,Feces,UBERON:0001988,Microbiome,EFO:0004982,Unspiked pig feces(P2) at 64 hours (-20°C),Unspiked pig feces(P2) at 16 hours (22°C),Unspiked P2 sample stored at a temperature of 22°C for 16 hours,1,1,NA,WMS,NA,Illumina,DESeq2,0.01,FALSE,NA,NA,NA,increased,NA,increased,increased,NA,NA,Signature 2,Figure 4,30 March 2024,Aleru Divine,Aleru Divine,Differential abundance of selected highly abundant bacteria between the storage conditions in unspiked pig feces P2,decreased,k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella,2|976|200643|171549|171552|838,Complete,NA -bsdb:1048/138/1,Study 1048,laboratory experiment,34612701,10.1128%2FSpectrum.01387-21,https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8510183/,"Poulsen CS, Kaas RS, Aarestrup FM , Pamp SJ",Standard Sample Storage Conditions Have an Impact on Inferred Microbiome Composition and Antimicrobial Resistance Patterns,Microbiology spectrum,2021,"antimicrobial resistance, bacteria, complex samples, freezing, metagenomics, microbial community composition, microbiome, mock community, parasite, sample storage, spiking, synthetic mock community",Experiment 138,Denmark,Sus scrofa domesticus,Feces,UBERON:0001988,Microbiome,EFO:0004982,Unspiked pig feces(P2) at 64 hours (-20°C),Unspiked pig feces(P2) at 64 hours (22°C),Unspiked P2 sample stored at a temperature of 22°C for 64 hours,1,1,NA,WMS,NA,Illumina,DESeq2,0.01,FALSE,NA,NA,NA,increased,NA,increased,increased,NA,NA,Signature 1,Figure 4,30 March 2024,Aleru Divine,Aleru Divine,Differential abundance of selected highly abundant bacteria between the storage conditions in unspiked pig feces P2,increased,"k__Bacteria|p__Spirochaetota|c__Spirochaetia|o__Spirochaetales|f__Treponemataceae|g__Treponema,k__Bacteria|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Faecalibacterium,k__Bacteria|p__Bacillota|c__Negativicutes|o__Acidaminococcales|f__Acidaminococcaceae|g__Phascolarctobacterium,k__Bacteria|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Roseburia",2|203691|203692|136|2845253|157;2|1239|186801|186802|216572|216851;2|1239|909932|1843488|909930|33024;2|1239|186801|3085636|186803|841,Complete,NA -bsdb:1048/138/2,Study 1048,laboratory experiment,34612701,10.1128%2FSpectrum.01387-21,https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8510183/,"Poulsen CS, Kaas RS, Aarestrup FM , Pamp SJ",Standard Sample Storage Conditions Have an Impact on Inferred Microbiome Composition and Antimicrobial Resistance Patterns,Microbiology spectrum,2021,"antimicrobial resistance, bacteria, complex samples, freezing, metagenomics, microbial community composition, microbiome, mock community, parasite, sample storage, spiking, synthetic mock community",Experiment 138,Denmark,Sus scrofa domesticus,Feces,UBERON:0001988,Microbiome,EFO:0004982,Unspiked pig feces(P2) at 64 hours (-20°C),Unspiked pig feces(P2) at 64 hours (22°C),Unspiked P2 sample stored at a temperature of 22°C for 64 hours,1,1,NA,WMS,NA,Illumina,DESeq2,0.01,FALSE,NA,NA,NA,increased,NA,increased,increased,NA,NA,Signature 2,Figure 4,30 March 2024,Aleru Divine,Aleru Divine,Differential abundance of selected highly abundant bacteria between the storage conditions in unspiked pig feces P2,decreased,k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella,2|976|200643|171549|171552|838,Complete,NA -bsdb:1048/139/1,Study 1048,laboratory experiment,34612701,10.1128%2FSpectrum.01387-21,https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8510183/,"Poulsen CS, Kaas RS, Aarestrup FM , Pamp SJ",Standard Sample Storage Conditions Have an Impact on Inferred Microbiome Composition and Antimicrobial Resistance Patterns,Microbiology spectrum,2021,"antimicrobial resistance, bacteria, complex samples, freezing, metagenomics, microbial community composition, microbiome, mock community, parasite, sample storage, spiking, synthetic mock community",Experiment 139,Denmark,Sus scrofa domesticus,Feces,UBERON:0001988,Microbiome,EFO:0004982,Unspiked pig feces(P2) at 16 hours (5°C),Unspiked pig feces(P2) at 64 hours (5°C),Unspiked P2 sample stored at a temperature of 5°C for 64 hours,1,1,NA,WMS,NA,Illumina,DESeq2,0.01,FALSE,NA,NA,NA,increased,NA,decreased,increased,NA,NA,Signature 1,Figure 4,30 March 2024,Aleru Divine,Aleru Divine,Differential abundance of selected highly abundant bacteria between the storage conditions in unspiked pig feces P2,increased,"k__Bacteria|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Faecalibacterium,k__Bacteria|p__Bacillota|c__Negativicutes|o__Acidaminococcales|f__Acidaminococcaceae|g__Phascolarctobacterium,k__Bacteria|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Roseburia",2|1239|186801|186802|216572|216851;2|1239|909932|1843488|909930|33024;2|1239|186801|3085636|186803|841,Complete,NA -bsdb:1048/139/2,Study 1048,laboratory experiment,34612701,10.1128%2FSpectrum.01387-21,https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8510183/,"Poulsen CS, Kaas RS, Aarestrup FM , Pamp SJ",Standard Sample Storage Conditions Have an Impact on Inferred Microbiome Composition and Antimicrobial Resistance Patterns,Microbiology spectrum,2021,"antimicrobial resistance, bacteria, complex samples, freezing, metagenomics, microbial community composition, microbiome, mock community, parasite, sample storage, spiking, synthetic mock community",Experiment 139,Denmark,Sus scrofa domesticus,Feces,UBERON:0001988,Microbiome,EFO:0004982,Unspiked pig feces(P2) at 16 hours (5°C),Unspiked pig feces(P2) at 64 hours (5°C),Unspiked P2 sample stored at a temperature of 5°C for 64 hours,1,1,NA,WMS,NA,Illumina,DESeq2,0.01,FALSE,NA,NA,NA,increased,NA,decreased,increased,NA,NA,Signature 2,Figure 4,30 March 2024,Aleru Divine,Aleru Divine,Differential abundance of selected highly abundant bacteria between the storage conditions in unspiked pig feces P2,decreased,"k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella,k__Bacteria|p__Spirochaetota|c__Spirochaetia|o__Spirochaetales|f__Treponemataceae|g__Treponema",2|976|200643|171549|171552|838;2|203691|203692|136|2845253|157,Complete,NA -bsdb:1048/140/1,Study 1048,laboratory experiment,34612701,10.1128%2FSpectrum.01387-21,https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8510183/,"Poulsen CS, Kaas RS, Aarestrup FM , Pamp SJ",Standard Sample Storage Conditions Have an Impact on Inferred Microbiome Composition and Antimicrobial Resistance Patterns,Microbiology spectrum,2021,"antimicrobial resistance, bacteria, complex samples, freezing, metagenomics, microbial community composition, microbiome, mock community, parasite, sample storage, spiking, synthetic mock community",Experiment 140,Denmark,Sus scrofa domesticus,Feces,UBERON:0001988,Microbiome,EFO:0004982,Unspiked pig feces(P2) at 16 hours (5°C),Unspiked pig feces(P2) at 16 hours (22°C),Unspiked P2 sample stored at a temperature of 22°C for 16 hours,1,1,NA,WMS,NA,Illumina,DESeq2,0.01,FALSE,NA,NA,NA,increased,NA,increased,increased,NA,NA,Signature 1,Figure 4,30 March 2024,Aleru Divine,Aleru Divine,Differential abundance of selected highly abundant bacteria between the storage conditions in unspiked pig feces P2,increased,"k__Bacteria|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Faecalibacterium,k__Bacteria|p__Bacillota|c__Negativicutes|o__Acidaminococcales|f__Acidaminococcaceae|g__Phascolarctobacterium,k__Bacteria|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Roseburia",2|1239|186801|186802|216572|216851;2|1239|909932|1843488|909930|33024;2|1239|186801|3085636|186803|841,Complete,NA -bsdb:1048/140/2,Study 1048,laboratory experiment,34612701,10.1128%2FSpectrum.01387-21,https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8510183/,"Poulsen CS, Kaas RS, Aarestrup FM , Pamp SJ",Standard Sample Storage Conditions Have an Impact on Inferred Microbiome Composition and Antimicrobial Resistance Patterns,Microbiology spectrum,2021,"antimicrobial resistance, bacteria, complex samples, freezing, metagenomics, microbial community composition, microbiome, mock community, parasite, sample storage, spiking, synthetic mock community",Experiment 140,Denmark,Sus scrofa domesticus,Feces,UBERON:0001988,Microbiome,EFO:0004982,Unspiked pig feces(P2) at 16 hours (5°C),Unspiked pig feces(P2) at 16 hours (22°C),Unspiked P2 sample stored at a temperature of 22°C for 16 hours,1,1,NA,WMS,NA,Illumina,DESeq2,0.01,FALSE,NA,NA,NA,increased,NA,increased,increased,NA,NA,Signature 2,Figure 4,30 March 2024,Aleru Divine,Aleru Divine,Differential abundance of selected highly abundant bacteria between the storage conditions in unspiked pig feces P2,decreased,"k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella,k__Bacteria|p__Spirochaetota|c__Spirochaetia|o__Spirochaetales|f__Treponemataceae|g__Treponema",2|976|200643|171549|171552|838;2|203691|203692|136|2845253|157,Complete,NA -bsdb:1048/141/1,Study 1048,laboratory experiment,34612701,10.1128%2FSpectrum.01387-21,https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8510183/,"Poulsen CS, Kaas RS, Aarestrup FM , Pamp SJ",Standard Sample Storage Conditions Have an Impact on Inferred Microbiome Composition and Antimicrobial Resistance Patterns,Microbiology spectrum,2021,"antimicrobial resistance, bacteria, complex samples, freezing, metagenomics, microbial community composition, microbiome, mock community, parasite, sample storage, spiking, synthetic mock community",Experiment 141,Denmark,Sus scrofa domesticus,Feces,UBERON:0001988,Microbiome,EFO:0004982,Unspiked pig feces(P2) at 16 hours (5°C),Unspiked pig feces(P2) at 64 hours (22°C),Unspiked P2 sample stored at a temperature of 22°C for 64 hours,1,1,NA,WMS,NA,Illumina,DESeq2,0.01,FALSE,NA,NA,NA,increased,NA,increased,increased,NA,NA,Signature 1,Figure 4,30 March 2024,Aleru Divine,Aleru Divine,Differential abundance of selected highly abundant bacteria between the storage conditions in unspiked pig feces P2,increased,"k__Bacteria|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Faecalibacterium,k__Bacteria|p__Bacillota|c__Negativicutes|o__Acidaminococcales|f__Acidaminococcaceae|g__Phascolarctobacterium,k__Bacteria|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Roseburia",2|1239|186801|186802|216572|216851;2|1239|909932|1843488|909930|33024;2|1239|186801|3085636|186803|841,Complete,NA -bsdb:1048/141/2,Study 1048,laboratory experiment,34612701,10.1128%2FSpectrum.01387-21,https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8510183/,"Poulsen CS, Kaas RS, Aarestrup FM , Pamp SJ",Standard Sample Storage Conditions Have an Impact on Inferred Microbiome Composition and Antimicrobial Resistance Patterns,Microbiology spectrum,2021,"antimicrobial resistance, bacteria, complex samples, freezing, metagenomics, microbial community composition, microbiome, mock community, parasite, sample storage, spiking, synthetic mock community",Experiment 141,Denmark,Sus scrofa domesticus,Feces,UBERON:0001988,Microbiome,EFO:0004982,Unspiked pig feces(P2) at 16 hours (5°C),Unspiked pig feces(P2) at 64 hours (22°C),Unspiked P2 sample stored at a temperature of 22°C for 64 hours,1,1,NA,WMS,NA,Illumina,DESeq2,0.01,FALSE,NA,NA,NA,increased,NA,increased,increased,NA,NA,Signature 2,Figure 4,30 March 2024,Aleru Divine,Aleru Divine,Differential abundance of selected highly abundant bacteria between the storage conditions in unspiked pig feces P2,decreased,"k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella,k__Bacteria|p__Spirochaetota|c__Spirochaetia|o__Spirochaetales|f__Treponemataceae|g__Treponema",2|976|200643|171549|171552|838;2|203691|203692|136|2845253|157,Complete,NA -bsdb:1048/142/1,Study 1048,laboratory experiment,34612701,10.1128%2FSpectrum.01387-21,https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8510183/,"Poulsen CS, Kaas RS, Aarestrup FM , Pamp SJ",Standard Sample Storage Conditions Have an Impact on Inferred Microbiome Composition and Antimicrobial Resistance Patterns,Microbiology spectrum,2021,"antimicrobial resistance, bacteria, complex samples, freezing, metagenomics, microbial community composition, microbiome, mock community, parasite, sample storage, spiking, synthetic mock community",Experiment 142,Denmark,Sus scrofa domesticus,Feces,UBERON:0001988,Microbiome,EFO:0004982,Unspiked pig feces(P2) at 64 hours (5°C),Unspiked pig feces(P2) at 16 hours (22°C),Unspiked P2 sample stored at a temperature of 22°C for 16 hours,1,1,NA,WMS,NA,Illumina,DESeq2,0.01,FALSE,NA,NA,NA,decreased,NA,increased,decreased,NA,NA,Signature 1,Figure 4,30 March 2024,Aleru Divine,Aleru Divine,Differential abundance of selected highly abundant bacteria between the storage conditions in unspiked pig feces P2,increased,"k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella,k__Bacteria|p__Spirochaetota|c__Spirochaetia|o__Spirochaetales|f__Treponemataceae|g__Treponema",2|976|200643|171549|171552|838;2|203691|203692|136|2845253|157,Complete,NA -bsdb:1048/142/2,Study 1048,laboratory experiment,34612701,10.1128%2FSpectrum.01387-21,https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8510183/,"Poulsen CS, Kaas RS, Aarestrup FM , Pamp SJ",Standard Sample Storage Conditions Have an Impact on Inferred Microbiome Composition and Antimicrobial Resistance Patterns,Microbiology spectrum,2021,"antimicrobial resistance, bacteria, complex samples, freezing, metagenomics, microbial community composition, microbiome, mock community, parasite, sample storage, spiking, synthetic mock community",Experiment 142,Denmark,Sus scrofa domesticus,Feces,UBERON:0001988,Microbiome,EFO:0004982,Unspiked pig feces(P2) at 64 hours (5°C),Unspiked pig feces(P2) at 16 hours (22°C),Unspiked P2 sample stored at a temperature of 22°C for 16 hours,1,1,NA,WMS,NA,Illumina,DESeq2,0.01,FALSE,NA,NA,NA,decreased,NA,increased,decreased,NA,NA,Signature 2,Figure 4,30 March 2024,Aleru Divine,Aleru Divine,Differential abundance of selected highly abundant bacteria between the storage conditions in unspiked pig feces P2,decreased,"k__Bacteria|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Faecalibacterium,k__Bacteria|p__Bacillota|c__Negativicutes|o__Acidaminococcales|f__Acidaminococcaceae|g__Phascolarctobacterium,k__Bacteria|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Roseburia",2|1239|186801|186802|216572|216851;2|1239|909932|1843488|909930|33024;2|1239|186801|3085636|186803|841,Complete,NA -bsdb:1048/143/1,Study 1048,laboratory experiment,34612701,10.1128%2FSpectrum.01387-21,https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8510183/,"Poulsen CS, Kaas RS, Aarestrup FM , Pamp SJ",Standard Sample Storage Conditions Have an Impact on Inferred Microbiome Composition and Antimicrobial Resistance Patterns,Microbiology spectrum,2021,"antimicrobial resistance, bacteria, complex samples, freezing, metagenomics, microbial community composition, microbiome, mock community, parasite, sample storage, spiking, synthetic mock community",Experiment 143,Denmark,Sus scrofa domesticus,Feces,UBERON:0001988,Microbiome,EFO:0004982,Unspiked pig feces(P2) at 64 hours (5°C),Unspiked pig feces(P2) at 64 hours (22°C),Unspiked P2 sample stored at a temperature of 22°C for 64 hours,1,1,NA,WMS,NA,Illumina,DESeq2,0.01,FALSE,NA,NA,NA,increased,NA,unchanged,increased,NA,NA,Signature 1,Figure 4,30 March 2024,Aleru Divine,Aleru Divine,Differential abundance of selected highly abundant bacteria between the storage conditions in unspiked pig feces P2,increased,"k__Bacteria|p__Spirochaetota|c__Spirochaetia|o__Spirochaetales|f__Treponemataceae|g__Treponema,k__Bacteria|p__Bacillota|c__Negativicutes|o__Acidaminococcales|f__Acidaminococcaceae|g__Phascolarctobacterium",2|203691|203692|136|2845253|157;2|1239|909932|1843488|909930|33024,Complete,NA -bsdb:1048/143/2,Study 1048,laboratory experiment,34612701,10.1128%2FSpectrum.01387-21,https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8510183/,"Poulsen CS, Kaas RS, Aarestrup FM , Pamp SJ",Standard Sample Storage Conditions Have an Impact on Inferred Microbiome Composition and Antimicrobial Resistance Patterns,Microbiology spectrum,2021,"antimicrobial resistance, bacteria, complex samples, freezing, metagenomics, microbial community composition, microbiome, mock community, parasite, sample storage, spiking, synthetic mock community",Experiment 143,Denmark,Sus scrofa domesticus,Feces,UBERON:0001988,Microbiome,EFO:0004982,Unspiked pig feces(P2) at 64 hours (5°C),Unspiked pig feces(P2) at 64 hours (22°C),Unspiked P2 sample stored at a temperature of 22°C for 64 hours,1,1,NA,WMS,NA,Illumina,DESeq2,0.01,FALSE,NA,NA,NA,increased,NA,unchanged,increased,NA,NA,Signature 2,Figure 4,30 March 2024,Aleru Divine,Aleru Divine,Differential abundance of selected highly abundant bacteria between the storage conditions in unspiked pig feces P2,decreased,"k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella,k__Bacteria|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Faecalibacterium,k__Bacteria|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Roseburia",2|976|200643|171549|171552|838;2|1239|186801|186802|216572|216851;2|1239|186801|3085636|186803|841,Complete,NA -bsdb:1048/144/1,Study 1048,laboratory experiment,34612701,10.1128%2FSpectrum.01387-21,https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8510183/,"Poulsen CS, Kaas RS, Aarestrup FM , Pamp SJ",Standard Sample Storage Conditions Have an Impact on Inferred Microbiome Composition and Antimicrobial Resistance Patterns,Microbiology spectrum,2021,"antimicrobial resistance, bacteria, complex samples, freezing, metagenomics, microbial community composition, microbiome, mock community, parasite, sample storage, spiking, synthetic mock community",Experiment 144,Denmark,Sus scrofa domesticus,Feces,UBERON:0001988,Microbiome,EFO:0004982,Unspiked pig feces(P2) at 16 hours (22°C),Unspiked pig feces(P2) at 64 hours (22°C),Unspiked P2 sample stored at a temperature of 22°C for 64 hours,1,1,NA,WMS,NA,Illumina,DESeq2,0.01,FALSE,NA,NA,NA,increased,NA,decreased,increased,NA,NA,Signature 1,Figure 4,30 March 2024,Aleru Divine,Aleru Divine,Differential abundance of selected highly abundant bacteria between the storage conditions in unspiked pig feces P2,increased,"k__Bacteria|p__Spirochaetota|c__Spirochaetia|o__Spirochaetales|f__Treponemataceae|g__Treponema,k__Bacteria|p__Bacillota|c__Negativicutes|o__Acidaminococcales|f__Acidaminococcaceae|g__Phascolarctobacterium,k__Bacteria|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Roseburia",2|203691|203692|136|2845253|157;2|1239|909932|1843488|909930|33024;2|1239|186801|3085636|186803|841,Complete,NA -bsdb:1048/144/2,Study 1048,laboratory experiment,34612701,10.1128%2FSpectrum.01387-21,https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8510183/,"Poulsen CS, Kaas RS, Aarestrup FM , Pamp SJ",Standard Sample Storage Conditions Have an Impact on Inferred Microbiome Composition and Antimicrobial Resistance Patterns,Microbiology spectrum,2021,"antimicrobial resistance, bacteria, complex samples, freezing, metagenomics, microbial community composition, microbiome, mock community, parasite, sample storage, spiking, synthetic mock community",Experiment 144,Denmark,Sus scrofa domesticus,Feces,UBERON:0001988,Microbiome,EFO:0004982,Unspiked pig feces(P2) at 16 hours (22°C),Unspiked pig feces(P2) at 64 hours (22°C),Unspiked P2 sample stored at a temperature of 22°C for 64 hours,1,1,NA,WMS,NA,Illumina,DESeq2,0.01,FALSE,NA,NA,NA,increased,NA,decreased,increased,NA,NA,Signature 2,Figure 4,30 March 2024,Aleru Divine,Aleru Divine,Differential abundance of selected highly abundant bacteria between the storage conditions in unspiked pig feces P2,decreased,"k__Bacteria|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Faecalibacterium,k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella",2|1239|186801|186802|216572|216851;2|976|200643|171549|171552|838,Complete,NA -bsdb:1048/145/1,Study 1048,laboratory experiment,34612701,10.1128%2FSpectrum.01387-21,https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8510183/,"Poulsen CS, Kaas RS, Aarestrup FM , Pamp SJ",Standard Sample Storage Conditions Have an Impact on Inferred Microbiome Composition and Antimicrobial Resistance Patterns,Microbiology spectrum,2021,"antimicrobial resistance, bacteria, complex samples, freezing, metagenomics, microbial community composition, microbiome, mock community, parasite, sample storage, spiking, synthetic mock community",Experiment 145,Denmark,Not specified,NA,NA,Microbiome,EFO:0004982,Unspiked sewage samples (S1) at 0 hours,Unspiked sewage samples (S1) at 16 hours (-80°C),Unspiked S1 sample stored at a temperature of -80°C for 16 hours,1,1,NA,WMS,NA,Illumina,DESeq2,0.01,FALSE,NA,NA,NA,increased,NA,decreased,increased,NA,NA,Signature 1,Figure 4,3 April 2024,Bolanle,Bolanle,Differential abundance of selected highly abundant bacteria between the storage conditions in unspiked sewage sample S1,increased,"k__Bacteria|p__Campylobacterota|c__Epsilonproteobacteria|o__Campylobacterales|f__Arcobacteraceae|g__Arcobacter,k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella,k__Bacteria|p__Pseudomonadota|c__Gammaproteobacteria|o__Aeromonadales|f__Aeromonadaceae|g__Aeromonas",2|29547|3031852|213849|2808963|28196;2|976|200643|171549|171552|838;2|1224|1236|135624|84642|642,Complete,NA -bsdb:1048/145/2,Study 1048,laboratory experiment,34612701,10.1128%2FSpectrum.01387-21,https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8510183/,"Poulsen CS, Kaas RS, Aarestrup FM , Pamp SJ",Standard Sample Storage Conditions Have an Impact on Inferred Microbiome Composition and Antimicrobial Resistance Patterns,Microbiology spectrum,2021,"antimicrobial resistance, bacteria, complex samples, freezing, metagenomics, microbial community composition, microbiome, mock community, parasite, sample storage, spiking, synthetic mock community",Experiment 145,Denmark,Not specified,NA,NA,Microbiome,EFO:0004982,Unspiked sewage samples (S1) at 0 hours,Unspiked sewage samples (S1) at 16 hours (-80°C),Unspiked S1 sample stored at a temperature of -80°C for 16 hours,1,1,NA,WMS,NA,Illumina,DESeq2,0.01,FALSE,NA,NA,NA,increased,NA,decreased,increased,NA,NA,Signature 2,Figure 4,4 April 2024,Bolanle,Bolanle,Differential abundance of selected highly abundant bacteria between the storage conditions in unspiked sewage sample S1,decreased,"k__Bacteria|p__Pseudomonadota|c__Gammaproteobacteria|o__Moraxellales|f__Moraxellaceae|g__Acinetobacter,k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Tannerellaceae|g__Parabacteroides",2|1224|1236|2887326|468|469;2|976|200643|171549|2005525|375288,Complete,NA -bsdb:1048/146/1,Study 1048,laboratory experiment,34612701,10.1128%2FSpectrum.01387-21,https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8510183/,"Poulsen CS, Kaas RS, Aarestrup FM , Pamp SJ",Standard Sample Storage Conditions Have an Impact on Inferred Microbiome Composition and Antimicrobial Resistance Patterns,Microbiology spectrum,2021,"antimicrobial resistance, bacteria, complex samples, freezing, metagenomics, microbial community composition, microbiome, mock community, parasite, sample storage, spiking, synthetic mock community",Experiment 146,Denmark,Not specified,NA,NA,Microbiome,EFO:0004982,Unspiked sewage samples (S1) at 0 hours,Unspiked sewage samples (S1) at 64 hours (-80°C),Unspiked S1 sample stored at a temperature of -80°C for 64 hours,1,1,NA,WMS,NA,Illumina,DESeq2,0.01,FALSE,NA,NA,NA,increased,NA,increased,increased,NA,NA,Signature 1,Figure 4,4 April 2024,Bolanle,Bolanle,Differential abundance of selected highly abundant bacteria between the storage conditions in unspiked sewage sample S1,increased,"k__Bacteria|p__Campylobacterota|c__Epsilonproteobacteria|o__Campylobacterales|f__Arcobacteraceae|g__Arcobacter,k__Bacteria|p__Pseudomonadota|c__Gammaproteobacteria|o__Aeromonadales|f__Aeromonadaceae|g__Aeromonas",2|29547|3031852|213849|2808963|28196;2|1224|1236|135624|84642|642,Complete,NA -bsdb:1048/146/2,Study 1048,laboratory experiment,34612701,10.1128%2FSpectrum.01387-21,https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8510183/,"Poulsen CS, Kaas RS, Aarestrup FM , Pamp SJ",Standard Sample Storage Conditions Have an Impact on Inferred Microbiome Composition and Antimicrobial Resistance Patterns,Microbiology spectrum,2021,"antimicrobial resistance, bacteria, complex samples, freezing, metagenomics, microbial community composition, microbiome, mock community, parasite, sample storage, spiking, synthetic mock community",Experiment 146,Denmark,Not specified,NA,NA,Microbiome,EFO:0004982,Unspiked sewage samples (S1) at 0 hours,Unspiked sewage samples (S1) at 64 hours (-80°C),Unspiked S1 sample stored at a temperature of -80°C for 64 hours,1,1,NA,WMS,NA,Illumina,DESeq2,0.01,FALSE,NA,NA,NA,increased,NA,increased,increased,NA,NA,Signature 2,Figure 4,4 April 2024,Bolanle,Bolanle,Differential abundance of selected highly abundant bacteria between the storage conditions in unspiked sewage sample S1,decreased,"k__Bacteria|p__Pseudomonadota|c__Gammaproteobacteria|o__Moraxellales|f__Moraxellaceae|g__Acinetobacter,k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Tannerellaceae|g__Parabacteroides,k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella",2|1224|1236|2887326|468|469;2|976|200643|171549|2005525|375288;2|976|200643|171549|171552|838,Complete,NA -bsdb:1048/147/1,Study 1048,laboratory experiment,34612701,10.1128%2FSpectrum.01387-21,https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8510183/,"Poulsen CS, Kaas RS, Aarestrup FM , Pamp SJ",Standard Sample Storage Conditions Have an Impact on Inferred Microbiome Composition and Antimicrobial Resistance Patterns,Microbiology spectrum,2021,"antimicrobial resistance, bacteria, complex samples, freezing, metagenomics, microbial community composition, microbiome, mock community, parasite, sample storage, spiking, synthetic mock community",Experiment 147,Denmark,Not specified,NA,NA,Microbiome,EFO:0004982,Unspiked sewage samples (S1) at 0 hours,Unspiked sewage samples (S1) at 16 hours (-20°C),Unspiked S1 sample stored at a temperature of -20°C for 16 hours,1,1,NA,WMS,NA,Illumina,DESeq2,0.01,FALSE,NA,NA,NA,unchanged,NA,increased,increased,NA,NA,Signature 1,Figure 4,4 April 2024,Bolanle,Bolanle,Differential abundance of selected highly abundant bacteria between the storage conditions in unspiked sewage sample S1,increased,"k__Bacteria|p__Campylobacterota|c__Epsilonproteobacteria|o__Campylobacterales|f__Arcobacteraceae|g__Arcobacter,k__Bacteria|p__Pseudomonadota|c__Gammaproteobacteria|o__Aeromonadales|f__Aeromonadaceae|g__Aeromonas",2|29547|3031852|213849|2808963|28196;2|1224|1236|135624|84642|642,Complete,NA -bsdb:1048/147/2,Study 1048,laboratory experiment,34612701,10.1128%2FSpectrum.01387-21,https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8510183/,"Poulsen CS, Kaas RS, Aarestrup FM , Pamp SJ",Standard Sample Storage Conditions Have an Impact on Inferred Microbiome Composition and Antimicrobial Resistance Patterns,Microbiology spectrum,2021,"antimicrobial resistance, bacteria, complex samples, freezing, metagenomics, microbial community composition, microbiome, mock community, parasite, sample storage, spiking, synthetic mock community",Experiment 147,Denmark,Not specified,NA,NA,Microbiome,EFO:0004982,Unspiked sewage samples (S1) at 0 hours,Unspiked sewage samples (S1) at 16 hours (-20°C),Unspiked S1 sample stored at a temperature of -20°C for 16 hours,1,1,NA,WMS,NA,Illumina,DESeq2,0.01,FALSE,NA,NA,NA,unchanged,NA,increased,increased,NA,NA,Signature 2,Figure 4,4 April 2024,Bolanle,Bolanle,Differential abundance of selected highly abundant bacteria between the storage conditions in unspiked sewage sample S1,decreased,"k__Bacteria|p__Pseudomonadota|c__Gammaproteobacteria|o__Moraxellales|f__Moraxellaceae|g__Acinetobacter,k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Tannerellaceae|g__Parabacteroides,k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella",2|1224|1236|2887326|468|469;2|976|200643|171549|2005525|375288;2|976|200643|171549|171552|838,Complete,NA -bsdb:1048/148/1,Study 1048,laboratory experiment,34612701,10.1128%2FSpectrum.01387-21,https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8510183/,"Poulsen CS, Kaas RS, Aarestrup FM , Pamp SJ",Standard Sample Storage Conditions Have an Impact on Inferred Microbiome Composition and Antimicrobial Resistance Patterns,Microbiology spectrum,2021,"antimicrobial resistance, bacteria, complex samples, freezing, metagenomics, microbial community composition, microbiome, mock community, parasite, sample storage, spiking, synthetic mock community",Experiment 148,Denmark,Not specified,NA,NA,Microbiome,EFO:0004982,Unspiked sewage samples (S1) at 0 hours,Unspiked sewage samples (S1) at 64 hours (-20°C),Unspiked S1 sample stored at a temperature of -20°C for 64 hours,1,1,NA,WMS,NA,Illumina,DESeq2,0.01,FALSE,NA,NA,NA,unchanged,NA,increased,increased,NA,NA,Signature 1,Figure 4,4 April 2024,Bolanle,Bolanle,Differential abundance of selected highly abundant bacteria between the storage conditions in unspiked sewage sample S1,increased,"k__Bacteria|p__Campylobacterota|c__Epsilonproteobacteria|o__Campylobacterales|f__Arcobacteraceae|g__Arcobacter,k__Bacteria|p__Pseudomonadota|c__Gammaproteobacteria|o__Aeromonadales|f__Aeromonadaceae|g__Aeromonas,k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella",2|29547|3031852|213849|2808963|28196;2|1224|1236|135624|84642|642;2|976|200643|171549|171552|838,Complete,NA -bsdb:1048/148/2,Study 1048,laboratory experiment,34612701,10.1128%2FSpectrum.01387-21,https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8510183/,"Poulsen CS, Kaas RS, Aarestrup FM , Pamp SJ",Standard Sample Storage Conditions Have an Impact on Inferred Microbiome Composition and Antimicrobial Resistance Patterns,Microbiology spectrum,2021,"antimicrobial resistance, bacteria, complex samples, freezing, metagenomics, microbial community composition, microbiome, mock community, parasite, sample storage, spiking, synthetic mock community",Experiment 148,Denmark,Not specified,NA,NA,Microbiome,EFO:0004982,Unspiked sewage samples (S1) at 0 hours,Unspiked sewage samples (S1) at 64 hours (-20°C),Unspiked S1 sample stored at a temperature of -20°C for 64 hours,1,1,NA,WMS,NA,Illumina,DESeq2,0.01,FALSE,NA,NA,NA,unchanged,NA,increased,increased,NA,NA,Signature 2,Figure 4,4 April 2024,Bolanle,Bolanle,Differential abundance of selected highly abundant bacteria between the storage conditions in unspiked sewage sample S1,decreased,"k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Tannerellaceae|g__Parabacteroides,k__Bacteria|p__Pseudomonadota|c__Gammaproteobacteria|o__Moraxellales|f__Moraxellaceae|g__Acinetobacter",2|976|200643|171549|2005525|375288;2|1224|1236|2887326|468|469,Complete,NA -bsdb:1048/149/1,Study 1048,laboratory experiment,34612701,10.1128%2FSpectrum.01387-21,https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8510183/,"Poulsen CS, Kaas RS, Aarestrup FM , Pamp SJ",Standard Sample Storage Conditions Have an Impact on Inferred Microbiome Composition and Antimicrobial Resistance Patterns,Microbiology spectrum,2021,"antimicrobial resistance, bacteria, complex samples, freezing, metagenomics, microbial community composition, microbiome, mock community, parasite, sample storage, spiking, synthetic mock community",Experiment 149,Denmark,Not specified,NA,NA,Microbiome,EFO:0004982,Unspiked sewage samples (S1) at 0 hours,Unspiked sewage samples (S1) at 16 hours (5°C),Unspiked S1 sample stored at a temperature of 5°C for 16 hours,1,1,NA,WMS,NA,Illumina,DESeq2,0.01,FALSE,NA,NA,NA,unchanged,NA,increased,increased,NA,NA,Signature 1,Figure 4,4 April 2024,Bolanle,Bolanle,Differential abundance of selected highly abundant bacteria between the storage conditions in unspiked sewage sample S1,increased,"k__Bacteria|p__Campylobacterota|c__Epsilonproteobacteria|o__Campylobacterales|f__Arcobacteraceae|g__Arcobacter,k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella,k__Bacteria|p__Pseudomonadota|c__Gammaproteobacteria|o__Aeromonadales|f__Aeromonadaceae|g__Aeromonas",2|29547|3031852|213849|2808963|28196;2|976|200643|171549|171552|838;2|1224|1236|135624|84642|642,Complete,NA -bsdb:1048/149/2,Study 1048,laboratory experiment,34612701,10.1128%2FSpectrum.01387-21,https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8510183/,"Poulsen CS, Kaas RS, Aarestrup FM , Pamp SJ",Standard Sample Storage Conditions Have an Impact on Inferred Microbiome Composition and Antimicrobial Resistance Patterns,Microbiology spectrum,2021,"antimicrobial resistance, bacteria, complex samples, freezing, metagenomics, microbial community composition, microbiome, mock community, parasite, sample storage, spiking, synthetic mock community",Experiment 149,Denmark,Not specified,NA,NA,Microbiome,EFO:0004982,Unspiked sewage samples (S1) at 0 hours,Unspiked sewage samples (S1) at 16 hours (5°C),Unspiked S1 sample stored at a temperature of 5°C for 16 hours,1,1,NA,WMS,NA,Illumina,DESeq2,0.01,FALSE,NA,NA,NA,unchanged,NA,increased,increased,NA,NA,Signature 2,Figure 4,4 April 2024,Bolanle,Bolanle,Differential abundance of selected highly abundant bacteria between the storage conditions in unspiked sewage sample S1,decreased,"k__Bacteria|p__Pseudomonadota|c__Gammaproteobacteria|o__Moraxellales|f__Moraxellaceae|g__Acinetobacter,k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Tannerellaceae|g__Parabacteroides",2|1224|1236|2887326|468|469;2|976|200643|171549|2005525|375288,Complete,NA -bsdb:1048/150/1,Study 1048,laboratory experiment,34612701,10.1128%2FSpectrum.01387-21,https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8510183/,"Poulsen CS, Kaas RS, Aarestrup FM , Pamp SJ",Standard Sample Storage Conditions Have an Impact on Inferred Microbiome Composition and Antimicrobial Resistance Patterns,Microbiology spectrum,2021,"antimicrobial resistance, bacteria, complex samples, freezing, metagenomics, microbial community composition, microbiome, mock community, parasite, sample storage, spiking, synthetic mock community",Experiment 150,Denmark,Not specified,NA,NA,Microbiome,EFO:0004982,Unspiked sewage samples (S1) at 0 hours,Unspiked sewage samples (S1) at 64 hours (5°C),Unspiked S1 sample stored at a temperature of 5°C for 64 hours,1,1,NA,WMS,NA,Illumina,DESeq2,0.01,FALSE,NA,NA,NA,unchanged,NA,increased,unchanged,NA,NA,Signature 1,Figure 4,7 April 2024,Bolanle,Bolanle,Differential abundance of selected highly abundant bacteria between the storage conditions in unspiked sewage sample S1,increased,"k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Tannerellaceae|g__Parabacteroides,k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella,k__Bacteria|p__Pseudomonadota|c__Gammaproteobacteria|o__Aeromonadales|f__Aeromonadaceae|g__Aeromonas",2|976|200643|171549|2005525|375288;2|976|200643|171549|171552|838;2|1224|1236|135624|84642|642,Complete,NA -bsdb:1048/150/2,Study 1048,laboratory experiment,34612701,10.1128%2FSpectrum.01387-21,https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8510183/,"Poulsen CS, Kaas RS, Aarestrup FM , Pamp SJ",Standard Sample Storage Conditions Have an Impact on Inferred Microbiome Composition and Antimicrobial Resistance Patterns,Microbiology spectrum,2021,"antimicrobial resistance, bacteria, complex samples, freezing, metagenomics, microbial community composition, microbiome, mock community, parasite, sample storage, spiking, synthetic mock community",Experiment 150,Denmark,Not specified,NA,NA,Microbiome,EFO:0004982,Unspiked sewage samples (S1) at 0 hours,Unspiked sewage samples (S1) at 64 hours (5°C),Unspiked S1 sample stored at a temperature of 5°C for 64 hours,1,1,NA,WMS,NA,Illumina,DESeq2,0.01,FALSE,NA,NA,NA,unchanged,NA,increased,unchanged,NA,NA,Signature 2,Figure 4,7 April 2024,Bolanle,Bolanle,Differential abundance of selected highly abundant bacteria between the storage conditions in unspiked sewage sample S1,decreased,"k__Bacteria|p__Campylobacterota|c__Epsilonproteobacteria|o__Campylobacterales|f__Arcobacteraceae|g__Arcobacter,k__Bacteria|p__Pseudomonadota|c__Gammaproteobacteria|o__Moraxellales|f__Moraxellaceae|g__Acinetobacter",2|29547|3031852|213849|2808963|28196;2|1224|1236|2887326|468|469,Complete,NA -bsdb:1048/151/1,Study 1048,laboratory experiment,34612701,10.1128%2FSpectrum.01387-21,https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8510183/,"Poulsen CS, Kaas RS, Aarestrup FM , Pamp SJ",Standard Sample Storage Conditions Have an Impact on Inferred Microbiome Composition and Antimicrobial Resistance Patterns,Microbiology spectrum,2021,"antimicrobial resistance, bacteria, complex samples, freezing, metagenomics, microbial community composition, microbiome, mock community, parasite, sample storage, spiking, synthetic mock community",Experiment 151,Denmark,Not specified,NA,NA,Microbiome,EFO:0004982,Unspiked sewage samples (S1) at 0 hours,Unspiked sewage samples (S1) at 16 hours (22°C),Unspiked S1 sample stored at a temperature of 22°C for 16 hours,1,1,NA,WMS,NA,Illumina,DESeq2,0.01,FALSE,NA,NA,NA,unchanged,NA,decreased,increased,NA,NA,Signature 1,Figure 4,7 April 2024,Bolanle,Bolanle,Differential abundance of selected highly abundant bacteria between the storage conditions in unspiked sewage sample S1,increased,"k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Tannerellaceae|g__Parabacteroides,k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella,k__Bacteria|p__Pseudomonadota|c__Gammaproteobacteria|o__Aeromonadales|f__Aeromonadaceae|g__Aeromonas",2|976|200643|171549|2005525|375288;2|976|200643|171549|171552|838;2|1224|1236|135624|84642|642,Complete,NA -bsdb:1048/151/2,Study 1048,laboratory experiment,34612701,10.1128%2FSpectrum.01387-21,https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8510183/,"Poulsen CS, Kaas RS, Aarestrup FM , Pamp SJ",Standard Sample Storage Conditions Have an Impact on Inferred Microbiome Composition and Antimicrobial Resistance Patterns,Microbiology spectrum,2021,"antimicrobial resistance, bacteria, complex samples, freezing, metagenomics, microbial community composition, microbiome, mock community, parasite, sample storage, spiking, synthetic mock community",Experiment 151,Denmark,Not specified,NA,NA,Microbiome,EFO:0004982,Unspiked sewage samples (S1) at 0 hours,Unspiked sewage samples (S1) at 16 hours (22°C),Unspiked S1 sample stored at a temperature of 22°C for 16 hours,1,1,NA,WMS,NA,Illumina,DESeq2,0.01,FALSE,NA,NA,NA,unchanged,NA,decreased,increased,NA,NA,Signature 2,Figure 4,7 April 2024,Bolanle,Bolanle,Differential abundance of selected highly abundant bacteria between the storage conditions in unspiked sewage sample S1,decreased,"k__Bacteria|p__Campylobacterota|c__Epsilonproteobacteria|o__Campylobacterales|f__Arcobacteraceae|g__Arcobacter,k__Bacteria|p__Pseudomonadota|c__Gammaproteobacteria|o__Moraxellales|f__Moraxellaceae|g__Acinetobacter",2|29547|3031852|213849|2808963|28196;2|1224|1236|2887326|468|469,Complete,NA -bsdb:1048/152/1,Study 1048,laboratory experiment,34612701,10.1128%2FSpectrum.01387-21,https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8510183/,"Poulsen CS, Kaas RS, Aarestrup FM , Pamp SJ",Standard Sample Storage Conditions Have an Impact on Inferred Microbiome Composition and Antimicrobial Resistance Patterns,Microbiology spectrum,2021,"antimicrobial resistance, bacteria, complex samples, freezing, metagenomics, microbial community composition, microbiome, mock community, parasite, sample storage, spiking, synthetic mock community",Experiment 152,Denmark,Not specified,NA,NA,Microbiome,EFO:0004982,Unspiked sewage samples (S1) at 0 hours,Unspiked sewage samples (S1) at 64 hours (22°C),Unspiked S1 sample stored at a temperature of 22°C for 64 hours,1,1,NA,WMS,NA,Illumina,DESeq2,0.01,FALSE,NA,NA,NA,increased,NA,unchanged,increased,NA,NA,Signature 1,Figure 4,7 April 2024,Bolanle,Bolanle,Differential abundance of selected highly abundant bacteria between the storage conditions in unspiked sewage sample S1,increased,"k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella,k__Bacteria|p__Pseudomonadota|c__Gammaproteobacteria|o__Aeromonadales|f__Aeromonadaceae|g__Aeromonas",2|976|200643|171549|171552|838;2|1224|1236|135624|84642|642,Complete,NA -bsdb:1048/152/2,Study 1048,laboratory experiment,34612701,10.1128%2FSpectrum.01387-21,https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8510183/,"Poulsen CS, Kaas RS, Aarestrup FM , Pamp SJ",Standard Sample Storage Conditions Have an Impact on Inferred Microbiome Composition and Antimicrobial Resistance Patterns,Microbiology spectrum,2021,"antimicrobial resistance, bacteria, complex samples, freezing, metagenomics, microbial community composition, microbiome, mock community, parasite, sample storage, spiking, synthetic mock community",Experiment 152,Denmark,Not specified,NA,NA,Microbiome,EFO:0004982,Unspiked sewage samples (S1) at 0 hours,Unspiked sewage samples (S1) at 64 hours (22°C),Unspiked S1 sample stored at a temperature of 22°C for 64 hours,1,1,NA,WMS,NA,Illumina,DESeq2,0.01,FALSE,NA,NA,NA,increased,NA,unchanged,increased,NA,NA,Signature 2,Figure 4,7 April 2024,Bolanle,Bolanle,Differential abundance of selected highly abundant bacteria between the storage conditions in unspiked sewage sample S1,decreased,"k__Bacteria|p__Campylobacterota|c__Epsilonproteobacteria|o__Campylobacterales|f__Arcobacteraceae|g__Arcobacter,k__Bacteria|p__Pseudomonadota|c__Gammaproteobacteria|o__Moraxellales|f__Moraxellaceae|g__Acinetobacter,k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Tannerellaceae|g__Parabacteroides",2|29547|3031852|213849|2808963|28196;2|1224|1236|2887326|468|469;2|976|200643|171549|2005525|375288,Complete,NA -bsdb:1048/153/1,Study 1048,laboratory experiment,34612701,10.1128%2FSpectrum.01387-21,https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8510183/,"Poulsen CS, Kaas RS, Aarestrup FM , Pamp SJ",Standard Sample Storage Conditions Have an Impact on Inferred Microbiome Composition and Antimicrobial Resistance Patterns,Microbiology spectrum,2021,"antimicrobial resistance, bacteria, complex samples, freezing, metagenomics, microbial community composition, microbiome, mock community, parasite, sample storage, spiking, synthetic mock community",Experiment 153,Denmark,Not specified,NA,NA,Microbiome,EFO:0004982,Unspiked sewage samples (S1) at 16 hours (-80°C),Unspiked sewage samples (S1) at 64 hours (-80°C),Unspiked S1 sample stored at a temperature of -80°C for 64 hours,1,1,NA,WMS,NA,Illumina,DESeq2,0.01,FALSE,NA,NA,NA,decreased,NA,increased,unchanged,NA,NA,Signature 1,Figure 4,17 April 2024,Bolanle,Bolanle,NA,increased,k__Bacteria|p__Pseudomonadota|c__Gammaproteobacteria|o__Aeromonadales|f__Aeromonadaceae|g__Aeromonas,2|1224|1236|135624|84642|642,Complete,NA -bsdb:1048/153/2,Study 1048,laboratory experiment,34612701,10.1128%2FSpectrum.01387-21,https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8510183/,"Poulsen CS, Kaas RS, Aarestrup FM , Pamp SJ",Standard Sample Storage Conditions Have an Impact on Inferred Microbiome Composition and Antimicrobial Resistance Patterns,Microbiology spectrum,2021,"antimicrobial resistance, bacteria, complex samples, freezing, metagenomics, microbial community composition, microbiome, mock community, parasite, sample storage, spiking, synthetic mock community",Experiment 153,Denmark,Not specified,NA,NA,Microbiome,EFO:0004982,Unspiked sewage samples (S1) at 16 hours (-80°C),Unspiked sewage samples (S1) at 64 hours (-80°C),Unspiked S1 sample stored at a temperature of -80°C for 64 hours,1,1,NA,WMS,NA,Illumina,DESeq2,0.01,FALSE,NA,NA,NA,decreased,NA,increased,unchanged,NA,NA,Signature 2,Figure 4,17 April 2024,Bolanle,Bolanle,Differential abundance of selected highly abundant bacteria between the storage conditions in unspiked sewage sample S1,decreased,"k__Bacteria|p__Campylobacterota|c__Epsilonproteobacteria|o__Campylobacterales|f__Arcobacteraceae|g__Arcobacter,k__Bacteria|p__Pseudomonadota|c__Gammaproteobacteria|o__Moraxellales|f__Moraxellaceae|g__Acinetobacter,k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Tannerellaceae|g__Parabacteroides,k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella",2|29547|3031852|213849|2808963|28196;2|1224|1236|2887326|468|469;2|976|200643|171549|2005525|375288;2|976|200643|171549|171552|838,Complete,NA -bsdb:1048/154/1,Study 1048,laboratory experiment,34612701,10.1128%2FSpectrum.01387-21,https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8510183/,"Poulsen CS, Kaas RS, Aarestrup FM , Pamp SJ",Standard Sample Storage Conditions Have an Impact on Inferred Microbiome Composition and Antimicrobial Resistance Patterns,Microbiology spectrum,2021,"antimicrobial resistance, bacteria, complex samples, freezing, metagenomics, microbial community composition, microbiome, mock community, parasite, sample storage, spiking, synthetic mock community",Experiment 154,Denmark,Not specified,NA,NA,Microbiome,EFO:0004982,Unspiked sewage samples (S1) at 16 hours (-80°C),Unspiked sewage samples (S1) at 16 hours (-20°C),Unspiked S1 sample stored at a temperature of -20°C for 16 hours,1,1,NA,WMS,NA,Illumina,DESeq2,0.01,FALSE,NA,NA,NA,decreased,NA,increased,unchanged,NA,NA,Signature 1,Figure 4,17 April 2024,Bolanle,Bolanle,Differential abundance of selected highly abundant bacteria between the storage conditions in unspiked sewage sample S1,increased,k__Bacteria|p__Pseudomonadota|c__Gammaproteobacteria|o__Moraxellales|f__Moraxellaceae|g__Acinetobacter,2|1224|1236|2887326|468|469,Complete,NA -bsdb:1048/154/2,Study 1048,laboratory experiment,34612701,10.1128%2FSpectrum.01387-21,https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8510183/,"Poulsen CS, Kaas RS, Aarestrup FM , Pamp SJ",Standard Sample Storage Conditions Have an Impact on Inferred Microbiome Composition and Antimicrobial Resistance Patterns,Microbiology spectrum,2021,"antimicrobial resistance, bacteria, complex samples, freezing, metagenomics, microbial community composition, microbiome, mock community, parasite, sample storage, spiking, synthetic mock community",Experiment 154,Denmark,Not specified,NA,NA,Microbiome,EFO:0004982,Unspiked sewage samples (S1) at 16 hours (-80°C),Unspiked sewage samples (S1) at 16 hours (-20°C),Unspiked S1 sample stored at a temperature of -20°C for 16 hours,1,1,NA,WMS,NA,Illumina,DESeq2,0.01,FALSE,NA,NA,NA,decreased,NA,increased,unchanged,NA,NA,Signature 2,Figure 4,17 April 2024,Bolanle,Bolanle,Differential abundance of selected highly abundant bacteria between the storage conditions in unspiked sewage sample S1,decreased,"k__Bacteria|p__Campylobacterota|c__Epsilonproteobacteria|o__Campylobacterales|f__Arcobacteraceae|g__Arcobacter,k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Tannerellaceae|g__Parabacteroides,k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella,k__Bacteria|p__Pseudomonadota|c__Gammaproteobacteria|o__Aeromonadales|f__Aeromonadaceae|g__Aeromonas",2|29547|3031852|213849|2808963|28196;2|976|200643|171549|2005525|375288;2|976|200643|171549|171552|838;2|1224|1236|135624|84642|642,Complete,NA -bsdb:1048/155/1,Study 1048,laboratory experiment,34612701,10.1128%2FSpectrum.01387-21,https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8510183/,"Poulsen CS, Kaas RS, Aarestrup FM , Pamp SJ",Standard Sample Storage Conditions Have an Impact on Inferred Microbiome Composition and Antimicrobial Resistance Patterns,Microbiology spectrum,2021,"antimicrobial resistance, bacteria, complex samples, freezing, metagenomics, microbial community composition, microbiome, mock community, parasite, sample storage, spiking, synthetic mock community",Experiment 155,Denmark,Not specified,NA,NA,Microbiome,EFO:0004982,Unspiked sewage samples (S1) at 16 hours (-80°C),Unspiked sewage samples (S1) at 64 hours (-20°C),Unspiked S1 sample stored at a temperature of -20°C for 64 hours,1,1,NA,WMS,NA,Illumina,DESeq2,0.01,FALSE,NA,NA,NA,decreased,NA,increased,unchanged,NA,NA,Signature 1,Figure 4,17 April 2024,Bolanle,Bolanle,Differential abundance of selected highly abundant bacteria between the storage conditions in unspiked sewage sample S1,increased,k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella,2|976|200643|171549|171552|838,Complete,NA -bsdb:1048/155/2,Study 1048,laboratory experiment,34612701,10.1128%2FSpectrum.01387-21,https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8510183/,"Poulsen CS, Kaas RS, Aarestrup FM , Pamp SJ",Standard Sample Storage Conditions Have an Impact on Inferred Microbiome Composition and Antimicrobial Resistance Patterns,Microbiology spectrum,2021,"antimicrobial resistance, bacteria, complex samples, freezing, metagenomics, microbial community composition, microbiome, mock community, parasite, sample storage, spiking, synthetic mock community",Experiment 155,Denmark,Not specified,NA,NA,Microbiome,EFO:0004982,Unspiked sewage samples (S1) at 16 hours (-80°C),Unspiked sewage samples (S1) at 64 hours (-20°C),Unspiked S1 sample stored at a temperature of -20°C for 64 hours,1,1,NA,WMS,NA,Illumina,DESeq2,0.01,FALSE,NA,NA,NA,decreased,NA,increased,unchanged,NA,NA,Signature 2,Figure 4,17 April 2024,Bolanle,Bolanle,Differential abundance of selected highly abundant bacteria between the storage conditions in unspiked sewage sample S1,decreased,"k__Bacteria|p__Campylobacterota|c__Epsilonproteobacteria|o__Campylobacterales|f__Arcobacteraceae|g__Arcobacter,k__Bacteria|p__Pseudomonadota|c__Gammaproteobacteria|o__Moraxellales|f__Moraxellaceae|g__Acinetobacter,k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Tannerellaceae|g__Parabacteroides,k__Bacteria|p__Pseudomonadota|c__Gammaproteobacteria|o__Aeromonadales|f__Aeromonadaceae|g__Aeromonas",2|29547|3031852|213849|2808963|28196;2|1224|1236|2887326|468|469;2|976|200643|171549|2005525|375288;2|1224|1236|135624|84642|642,Complete,NA -bsdb:1048/156/1,Study 1048,laboratory experiment,34612701,10.1128%2FSpectrum.01387-21,https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8510183/,"Poulsen CS, Kaas RS, Aarestrup FM , Pamp SJ",Standard Sample Storage Conditions Have an Impact on Inferred Microbiome Composition and Antimicrobial Resistance Patterns,Microbiology spectrum,2021,"antimicrobial resistance, bacteria, complex samples, freezing, metagenomics, microbial community composition, microbiome, mock community, parasite, sample storage, spiking, synthetic mock community",Experiment 156,Denmark,Not specified,NA,NA,Microbiome,EFO:0004982,Unspiked sewage samples (S1) at 16 hours (-80°C),Unspiked sewage samples (S1) at 16 hours (5°C),Unspiked S1 sample stored at a temperature of 5°C for 16 hours,1,1,NA,WMS,NA,Illumina,DESeq2,0.01,FALSE,NA,NA,NA,decreased,NA,increased,decreased,NA,NA,Signature 1,Figure 4,17 April 2024,Bolanle,Bolanle,Differential abundance of selected highly abundant bacteria between the storage conditions in unspiked sewage sample S1,increased,"k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Tannerellaceae|g__Parabacteroides,k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella",2|976|200643|171549|2005525|375288;2|976|200643|171549|171552|838,Complete,NA -bsdb:1048/156/2,Study 1048,laboratory experiment,34612701,10.1128%2FSpectrum.01387-21,https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8510183/,"Poulsen CS, Kaas RS, Aarestrup FM , Pamp SJ",Standard Sample Storage Conditions Have an Impact on Inferred Microbiome Composition and Antimicrobial Resistance Patterns,Microbiology spectrum,2021,"antimicrobial resistance, bacteria, complex samples, freezing, metagenomics, microbial community composition, microbiome, mock community, parasite, sample storage, spiking, synthetic mock community",Experiment 156,Denmark,Not specified,NA,NA,Microbiome,EFO:0004982,Unspiked sewage samples (S1) at 16 hours (-80°C),Unspiked sewage samples (S1) at 16 hours (5°C),Unspiked S1 sample stored at a temperature of 5°C for 16 hours,1,1,NA,WMS,NA,Illumina,DESeq2,0.01,FALSE,NA,NA,NA,decreased,NA,increased,decreased,NA,NA,Signature 2,Figure 4,17 April 2024,Bolanle,Bolanle,Differential abundance of selected highly abundant bacteria between the storage conditions in unspiked sewage sample S1,decreased,"k__Bacteria|p__Campylobacterota|c__Epsilonproteobacteria|o__Campylobacterales|f__Arcobacteraceae|g__Arcobacter,k__Bacteria|p__Pseudomonadota|c__Gammaproteobacteria|o__Moraxellales|f__Moraxellaceae|g__Acinetobacter,k__Bacteria|p__Pseudomonadota|c__Gammaproteobacteria|o__Aeromonadales|f__Aeromonadaceae|g__Aeromonas",2|29547|3031852|213849|2808963|28196;2|1224|1236|2887326|468|469;2|1224|1236|135624|84642|642,Complete,NA -bsdb:1048/157/1,Study 1048,laboratory experiment,34612701,10.1128%2FSpectrum.01387-21,https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8510183/,"Poulsen CS, Kaas RS, Aarestrup FM , Pamp SJ",Standard Sample Storage Conditions Have an Impact on Inferred Microbiome Composition and Antimicrobial Resistance Patterns,Microbiology spectrum,2021,"antimicrobial resistance, bacteria, complex samples, freezing, metagenomics, microbial community composition, microbiome, mock community, parasite, sample storage, spiking, synthetic mock community",Experiment 157,Denmark,Not specified,NA,NA,Microbiome,EFO:0004982,Unspiked sewage samples (S1) at 16 hours (-80°C),Unspiked sewage samples (S1) at 64 hours (5°C),Unspiked S1 sample stored at a temperature of 5°C for 64 hours,1,1,NA,WMS,NA,Illumina,DESeq2,0.01,FALSE,NA,NA,NA,decreased,NA,increased,decreased,NA,NA,Signature 1,Figure 4,17 April 2024,Bolanle,Bolanle,Differential abundance of selected highly abundant bacteria between the storage conditions in unspiked sewage sample S1,increased,k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Tannerellaceae|g__Parabacteroides,2|976|200643|171549|2005525|375288,Complete,NA -bsdb:1048/157/2,Study 1048,laboratory experiment,34612701,10.1128%2FSpectrum.01387-21,https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8510183/,"Poulsen CS, Kaas RS, Aarestrup FM , Pamp SJ",Standard Sample Storage Conditions Have an Impact on Inferred Microbiome Composition and Antimicrobial Resistance Patterns,Microbiology spectrum,2021,"antimicrobial resistance, bacteria, complex samples, freezing, metagenomics, microbial community composition, microbiome, mock community, parasite, sample storage, spiking, synthetic mock community",Experiment 157,Denmark,Not specified,NA,NA,Microbiome,EFO:0004982,Unspiked sewage samples (S1) at 16 hours (-80°C),Unspiked sewage samples (S1) at 64 hours (5°C),Unspiked S1 sample stored at a temperature of 5°C for 64 hours,1,1,NA,WMS,NA,Illumina,DESeq2,0.01,FALSE,NA,NA,NA,decreased,NA,increased,decreased,NA,NA,Signature 2,Figure 4,17 April 2024,Bolanle,Bolanle,Differential abundance of selected highly abundant bacteria between the storage conditions in unspiked sewage sample S1,decreased,"k__Bacteria|p__Campylobacterota|c__Epsilonproteobacteria|o__Campylobacterales|f__Arcobacteraceae|g__Arcobacter,k__Bacteria|p__Pseudomonadota|c__Gammaproteobacteria|o__Moraxellales|f__Moraxellaceae|g__Acinetobacter,k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella,k__Bacteria|p__Pseudomonadota|c__Gammaproteobacteria|o__Aeromonadales|f__Aeromonadaceae|g__Aeromonas",2|29547|3031852|213849|2808963|28196;2|1224|1236|2887326|468|469;2|976|200643|171549|171552|838;2|1224|1236|135624|84642|642,Complete,NA -bsdb:1048/158/1,Study 1048,laboratory experiment,34612701,10.1128%2FSpectrum.01387-21,https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8510183/,"Poulsen CS, Kaas RS, Aarestrup FM , Pamp SJ",Standard Sample Storage Conditions Have an Impact on Inferred Microbiome Composition and Antimicrobial Resistance Patterns,Microbiology spectrum,2021,"antimicrobial resistance, bacteria, complex samples, freezing, metagenomics, microbial community composition, microbiome, mock community, parasite, sample storage, spiking, synthetic mock community",Experiment 158,Denmark,Not specified,NA,NA,Microbiome,EFO:0004982,Unspiked sewage samples (S1) at 16 hours (-80°C),Unspiked sewage samples (S1) at 16 hours (22°C),Unspiked S1 sample stored at a temperature of 22°C for 16 hours,1,1,NA,WMS,NA,Illumina,DESeq2,0.01,FALSE,NA,NA,NA,decreased,NA,increased,unchanged,NA,NA,Signature 1,Figure 4,17 April 2024,Bolanle,Bolanle,Differential abundance of selected highly abundant bacteria between the storage conditions in unspiked sewage sample S1,increased,"k__Bacteria|p__Pseudomonadota|c__Gammaproteobacteria|o__Moraxellales|f__Moraxellaceae|g__Acinetobacter,k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Tannerellaceae|g__Parabacteroides,k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella",2|1224|1236|2887326|468|469;2|976|200643|171549|2005525|375288;2|976|200643|171549|171552|838,Complete,NA -bsdb:1048/158/2,Study 1048,laboratory experiment,34612701,10.1128%2FSpectrum.01387-21,https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8510183/,"Poulsen CS, Kaas RS, Aarestrup FM , Pamp SJ",Standard Sample Storage Conditions Have an Impact on Inferred Microbiome Composition and Antimicrobial Resistance Patterns,Microbiology spectrum,2021,"antimicrobial resistance, bacteria, complex samples, freezing, metagenomics, microbial community composition, microbiome, mock community, parasite, sample storage, spiking, synthetic mock community",Experiment 158,Denmark,Not specified,NA,NA,Microbiome,EFO:0004982,Unspiked sewage samples (S1) at 16 hours (-80°C),Unspiked sewage samples (S1) at 16 hours (22°C),Unspiked S1 sample stored at a temperature of 22°C for 16 hours,1,1,NA,WMS,NA,Illumina,DESeq2,0.01,FALSE,NA,NA,NA,decreased,NA,increased,unchanged,NA,NA,Signature 2,Figure 4,17 April 2024,Bolanle,Bolanle,Differential abundance of selected highly abundant bacteria between the storage conditions in unspiked sewage sample S1,decreased,"k__Bacteria|p__Campylobacterota|c__Epsilonproteobacteria|o__Campylobacterales|f__Arcobacteraceae|g__Arcobacter,k__Bacteria|p__Pseudomonadota|c__Gammaproteobacteria|o__Aeromonadales|f__Aeromonadaceae|g__Aeromonas",2|29547|3031852|213849|2808963|28196;2|1224|1236|135624|84642|642,Complete,NA -bsdb:1048/159/1,Study 1048,laboratory experiment,34612701,10.1128%2FSpectrum.01387-21,https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8510183/,"Poulsen CS, Kaas RS, Aarestrup FM , Pamp SJ",Standard Sample Storage Conditions Have an Impact on Inferred Microbiome Composition and Antimicrobial Resistance Patterns,Microbiology spectrum,2021,"antimicrobial resistance, bacteria, complex samples, freezing, metagenomics, microbial community composition, microbiome, mock community, parasite, sample storage, spiking, synthetic mock community",Experiment 159,Denmark,Not specified,NA,NA,Microbiome,EFO:0004982,Unspiked sewage samples (S1) at 16 hours (-80°C),Unspiked sewage samples (S1) at 64 hours (22°C),Unspiked S1 sample stored at a temperature of 22°C for 64 hours,1,1,NA,WMS,NA,Illumina,DESeq2,0.01,FALSE,NA,NA,NA,increased,NA,increased,increased,NA,NA,Signature 1,Figure 4,17 April 2024,Bolanle,Bolanle,Differential abundance of selected highly abundant bacteria between the storage conditions in unspiked sewage sample S1,increased,"k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella,k__Bacteria|p__Pseudomonadota|c__Gammaproteobacteria|o__Aeromonadales|f__Aeromonadaceae|g__Aeromonas",2|976|200643|171549|171552|838;2|1224|1236|135624|84642|642,Complete,NA -bsdb:1048/159/2,Study 1048,laboratory experiment,34612701,10.1128%2FSpectrum.01387-21,https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8510183/,"Poulsen CS, Kaas RS, Aarestrup FM , Pamp SJ",Standard Sample Storage Conditions Have an Impact on Inferred Microbiome Composition and Antimicrobial Resistance Patterns,Microbiology spectrum,2021,"antimicrobial resistance, bacteria, complex samples, freezing, metagenomics, microbial community composition, microbiome, mock community, parasite, sample storage, spiking, synthetic mock community",Experiment 159,Denmark,Not specified,NA,NA,Microbiome,EFO:0004982,Unspiked sewage samples (S1) at 16 hours (-80°C),Unspiked sewage samples (S1) at 64 hours (22°C),Unspiked S1 sample stored at a temperature of 22°C for 64 hours,1,1,NA,WMS,NA,Illumina,DESeq2,0.01,FALSE,NA,NA,NA,increased,NA,increased,increased,NA,NA,Signature 2,Figure 4,19 April 2024,Bolanle,Bolanle,NA,decreased,"k__Bacteria|p__Campylobacterota|c__Epsilonproteobacteria|o__Campylobacterales|f__Arcobacteraceae|g__Arcobacter,k__Bacteria|p__Pseudomonadota|c__Gammaproteobacteria|o__Moraxellales|f__Moraxellaceae|g__Acinetobacter,k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Tannerellaceae|g__Parabacteroides",2|29547|3031852|213849|2808963|28196;2|1224|1236|2887326|468|469;2|976|200643|171549|2005525|375288,Complete,NA -bsdb:1048/160/1,Study 1048,laboratory experiment,34612701,10.1128%2FSpectrum.01387-21,https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8510183/,"Poulsen CS, Kaas RS, Aarestrup FM , Pamp SJ",Standard Sample Storage Conditions Have an Impact on Inferred Microbiome Composition and Antimicrobial Resistance Patterns,Microbiology spectrum,2021,"antimicrobial resistance, bacteria, complex samples, freezing, metagenomics, microbial community composition, microbiome, mock community, parasite, sample storage, spiking, synthetic mock community",Experiment 160,Denmark,Not specified,NA,NA,Microbiome,EFO:0004982,Unspiked sewage samples (S1) at 64 hours (-80°C),Unspiked sewage samples (S1) at 16 hours (-20°C),Unspiked S1 sample stored at a temperature of -20°C for 16 hours,1,1,NA,WMS,NA,Illumina,DESeq2,0.01,FALSE,NA,NA,NA,decreased,NA,decreased,decreased,NA,NA,Signature 1,Figure 4,20 April 2024,Bolanle,Bolanle,NA,increased,"k__Bacteria|p__Campylobacterota|c__Epsilonproteobacteria|o__Campylobacterales|f__Arcobacteraceae|g__Arcobacter,k__Bacteria|p__Pseudomonadota|c__Gammaproteobacteria|o__Moraxellales|f__Moraxellaceae|g__Acinetobacter,k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Tannerellaceae|g__Parabacteroides,k__Bacteria|p__Pseudomonadota|c__Gammaproteobacteria|o__Aeromonadales|f__Aeromonadaceae|g__Aeromonas",2|29547|3031852|213849|2808963|28196;2|1224|1236|2887326|468|469;2|976|200643|171549|2005525|375288;2|1224|1236|135624|84642|642,Complete,NA -bsdb:1048/160/2,Study 1048,laboratory experiment,34612701,10.1128%2FSpectrum.01387-21,https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8510183/,"Poulsen CS, Kaas RS, Aarestrup FM , Pamp SJ",Standard Sample Storage Conditions Have an Impact on Inferred Microbiome Composition and Antimicrobial Resistance Patterns,Microbiology spectrum,2021,"antimicrobial resistance, bacteria, complex samples, freezing, metagenomics, microbial community composition, microbiome, mock community, parasite, sample storage, spiking, synthetic mock community",Experiment 160,Denmark,Not specified,NA,NA,Microbiome,EFO:0004982,Unspiked sewage samples (S1) at 64 hours (-80°C),Unspiked sewage samples (S1) at 16 hours (-20°C),Unspiked S1 sample stored at a temperature of -20°C for 16 hours,1,1,NA,WMS,NA,Illumina,DESeq2,0.01,FALSE,NA,NA,NA,decreased,NA,decreased,decreased,NA,NA,Signature 2,Figure 4,20 April 2024,Bolanle,Bolanle,NA,decreased,k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella,2|976|200643|171549|171552|838,Complete,NA -bsdb:1048/161/1,Study 1048,laboratory experiment,34612701,10.1128%2FSpectrum.01387-21,https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8510183/,"Poulsen CS, Kaas RS, Aarestrup FM , Pamp SJ",Standard Sample Storage Conditions Have an Impact on Inferred Microbiome Composition and Antimicrobial Resistance Patterns,Microbiology spectrum,2021,"antimicrobial resistance, bacteria, complex samples, freezing, metagenomics, microbial community composition, microbiome, mock community, parasite, sample storage, spiking, synthetic mock community",Experiment 161,Denmark,Not specified,NA,NA,Microbiome,EFO:0004982,Unspiked sewage samples (S1) at 64 hours (-80°C),Unspiked sewage samples (S1) at 64 hours (-20°C),Unspiked S1 sample stored at a temperature of -20°C for 64 hours,1,1,NA,WMS,NA,Illumina,DESeq2,0.01,FALSE,NA,NA,NA,decreased,NA,decreased,decreased,NA,NA,Signature 1,Figure 4,27 April 2024,Bolanle,Bolanle,Differential abundance of selected highly abundant bacteria between the storage conditions in unspiked sewage sample S1,increased,"k__Bacteria|p__Campylobacterota|c__Epsilonproteobacteria|o__Campylobacterales|f__Arcobacteraceae|g__Arcobacter,k__Bacteria|p__Pseudomonadota|c__Gammaproteobacteria|o__Moraxellales|f__Moraxellaceae|g__Acinetobacter,k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Tannerellaceae|g__Parabacteroides,k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella",2|29547|3031852|213849|2808963|28196;2|1224|1236|2887326|468|469;2|976|200643|171549|2005525|375288;2|976|200643|171549|171552|838,Complete,NA -bsdb:1048/161/2,Study 1048,laboratory experiment,34612701,10.1128%2FSpectrum.01387-21,https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8510183/,"Poulsen CS, Kaas RS, Aarestrup FM , Pamp SJ",Standard Sample Storage Conditions Have an Impact on Inferred Microbiome Composition and Antimicrobial Resistance Patterns,Microbiology spectrum,2021,"antimicrobial resistance, bacteria, complex samples, freezing, metagenomics, microbial community composition, microbiome, mock community, parasite, sample storage, spiking, synthetic mock community",Experiment 161,Denmark,Not specified,NA,NA,Microbiome,EFO:0004982,Unspiked sewage samples (S1) at 64 hours (-80°C),Unspiked sewage samples (S1) at 64 hours (-20°C),Unspiked S1 sample stored at a temperature of -20°C for 64 hours,1,1,NA,WMS,NA,Illumina,DESeq2,0.01,FALSE,NA,NA,NA,decreased,NA,decreased,decreased,NA,NA,Signature 2,Figure 4,27 April 2024,Bolanle,Bolanle,Differential abundance of selected highly abundant bacteria between the storage conditions in unspiked sewage sample S1,decreased,k__Bacteria|p__Pseudomonadota|c__Gammaproteobacteria|o__Aeromonadales|f__Aeromonadaceae|g__Aeromonas,2|1224|1236|135624|84642|642,Complete,NA -bsdb:1048/162/1,Study 1048,laboratory experiment,34612701,10.1128%2FSpectrum.01387-21,https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8510183/,"Poulsen CS, Kaas RS, Aarestrup FM , Pamp SJ",Standard Sample Storage Conditions Have an Impact on Inferred Microbiome Composition and Antimicrobial Resistance Patterns,Microbiology spectrum,2021,"antimicrobial resistance, bacteria, complex samples, freezing, metagenomics, microbial community composition, microbiome, mock community, parasite, sample storage, spiking, synthetic mock community",Experiment 162,Denmark,Not specified,NA,NA,Microbiome,EFO:0004982,Unspiked sewage samples (S1) at 64 hours (-80°C),Unspiked sewage samples (S1) at 16 hours (5°C),Unspiked S1 sample stored at a temperature of 5°C for 16 hours,1,1,NA,WMS,NA,Illumina,DESeq2,0.01,FALSE,NA,NA,NA,decreased,NA,decreased,decreased,NA,NA,Signature 1,Figure 4,27 April 2024,Bolanle,Bolanle," -: Differential abundance of selected highly abundant bacteria between the storage conditions in unspiked sewage sample S1 -",increased,"k__Bacteria|p__Campylobacterota|c__Epsilonproteobacteria|o__Campylobacterales|f__Arcobacteraceae|g__Arcobacter,k__Bacteria|p__Pseudomonadota|c__Gammaproteobacteria|o__Moraxellales|f__Moraxellaceae|g__Acinetobacter,k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Tannerellaceae|g__Parabacteroides,k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella",2|29547|3031852|213849|2808963|28196;2|1224|1236|2887326|468|469;2|976|200643|171549|2005525|375288;2|976|200643|171549|171552|838,Complete,NA -bsdb:1048/162/2,Study 1048,laboratory experiment,34612701,10.1128%2FSpectrum.01387-21,https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8510183/,"Poulsen CS, Kaas RS, Aarestrup FM , Pamp SJ",Standard Sample Storage Conditions Have an Impact on Inferred Microbiome Composition and Antimicrobial Resistance Patterns,Microbiology spectrum,2021,"antimicrobial resistance, bacteria, complex samples, freezing, metagenomics, microbial community composition, microbiome, mock community, parasite, sample storage, spiking, synthetic mock community",Experiment 162,Denmark,Not specified,NA,NA,Microbiome,EFO:0004982,Unspiked sewage samples (S1) at 64 hours (-80°C),Unspiked sewage samples (S1) at 16 hours (5°C),Unspiked S1 sample stored at a temperature of 5°C for 16 hours,1,1,NA,WMS,NA,Illumina,DESeq2,0.01,FALSE,NA,NA,NA,decreased,NA,decreased,decreased,NA,NA,Signature 2,Figure 4,28 April 2024,Bolanle,Bolanle,Differential abundance of selected highly abundant bacteria between the storage conditions in unspiked sewage sample S1,decreased,k__Bacteria|p__Pseudomonadota|c__Gammaproteobacteria|o__Aeromonadales|f__Aeromonadaceae|g__Aeromonas,2|1224|1236|135624|84642|642,Complete,NA -bsdb:1048/163/NA,Study 1048,laboratory experiment,34612701,10.1128%2FSpectrum.01387-21,https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8510183/,"Poulsen CS, Kaas RS, Aarestrup FM , Pamp SJ",Standard Sample Storage Conditions Have an Impact on Inferred Microbiome Composition and Antimicrobial Resistance Patterns,Microbiology spectrum,2021,"antimicrobial resistance, bacteria, complex samples, freezing, metagenomics, microbial community composition, microbiome, mock community, parasite, sample storage, spiking, synthetic mock community",Experiment 163,Denmark,Not specified,NA,NA,Microbiome,EFO:0004982,Unspiked sewage samples (S1) at 64 hours (-80°C),Unspiked sewage samples (S1) at 64 hours (5°C),Unspiked S1 sample stored at a temperature of 5°C for 64 hours,1,1,NA,WMS,NA,Illumina,DESeq2,0.01,FALSE,NA,NA,NA,decreased,NA,unchanged,decreased,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA -bsdb:1048/164/NA,Study 1048,laboratory experiment,34612701,10.1128%2FSpectrum.01387-21,https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8510183/,"Poulsen CS, Kaas RS, Aarestrup FM , Pamp SJ",Standard Sample Storage Conditions Have an Impact on Inferred Microbiome Composition and Antimicrobial Resistance Patterns,Microbiology spectrum,2021,"antimicrobial resistance, bacteria, complex samples, freezing, metagenomics, microbial community composition, microbiome, mock community, parasite, sample storage, spiking, synthetic mock community",Experiment 164,Denmark,Not specified,NA,NA,Microbiome,EFO:0004982,Unspiked sewage samples (S1) at 64 hours (-80°C),Unspiked sewage samples (S1) at 16 hours (22°C),Unspiked S1 sample stored at a temperature of 22°C for 16 hours,1,1,NA,WMS,NA,Illumina,DESeq2,0.01,FALSE,NA,NA,NA,decreased,NA,decreased,decreased,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA -bsdb:1048/165/NA,Study 1048,laboratory experiment,34612701,10.1128%2FSpectrum.01387-21,https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8510183/,"Poulsen CS, Kaas RS, Aarestrup FM , Pamp SJ",Standard Sample Storage Conditions Have an Impact on Inferred Microbiome Composition and Antimicrobial Resistance Patterns,Microbiology spectrum,2021,"antimicrobial resistance, bacteria, complex samples, freezing, metagenomics, microbial community composition, microbiome, mock community, parasite, sample storage, spiking, synthetic mock community",Experiment 165,Denmark,Not specified,NA,NA,Microbiome,EFO:0004982,Unspiked sewage samples (S1) at 64 hours (-80°C),Unspiked sewage samples (S1) at 64 hours (22°C),Unspiked S1 sample stored at a temperature of 22°C for 64 hours,1,1,NA,WMS,NA,Illumina,DESeq2,0.01,FALSE,NA,NA,NA,increased,NA,decreased,increased,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA -bsdb:1048/166/NA,Study 1048,laboratory experiment,34612701,10.1128%2FSpectrum.01387-21,https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8510183/,"Poulsen CS, Kaas RS, Aarestrup FM , Pamp SJ",Standard Sample Storage Conditions Have an Impact on Inferred Microbiome Composition and Antimicrobial Resistance Patterns,Microbiology spectrum,2021,"antimicrobial resistance, bacteria, complex samples, freezing, metagenomics, microbial community composition, microbiome, mock community, parasite, sample storage, spiking, synthetic mock community",Experiment 166,Denmark,Not specified,NA,NA,Microbiome,EFO:0004982,Unspiked sewage samples (S1) at 16 hours (-20°C),Unspiked sewage samples (S1) at 64 hours (-20°C),Unspiked S1 sample stored at a temperature of -20°C for 64 hours,1,1,NA,WMS,NA,Illumina,DESeq2,0.01,FALSE,NA,NA,NA,unchanged,NA,increased,unchanged,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA -bsdb:1048/167/NA,Study 1048,laboratory experiment,34612701,10.1128%2FSpectrum.01387-21,https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8510183/,"Poulsen CS, Kaas RS, Aarestrup FM , Pamp SJ",Standard Sample Storage Conditions Have an Impact on Inferred Microbiome Composition and Antimicrobial Resistance Patterns,Microbiology spectrum,2021,"antimicrobial resistance, bacteria, complex samples, freezing, metagenomics, microbial community composition, microbiome, mock community, parasite, sample storage, spiking, synthetic mock community",Experiment 167,Denmark,Not specified,NA,NA,Microbiome,EFO:0004982,Unspiked sewage samples (S1) at 16 hours (-20°C),Unspiked sewage samples (S1) at 16 hours (5°C),Unspiked S1 sample stored at a temperature of 5°C for 16 hours,1,1,NA,WMS,NA,Illumina,DESeq2,0.01,FALSE,NA,NA,NA,unchanged,NA,unchanged,unchanged,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA -bsdb:1048/168/NA,Study 1048,laboratory experiment,34612701,10.1128%2FSpectrum.01387-21,https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8510183/,"Poulsen CS, Kaas RS, Aarestrup FM , Pamp SJ",Standard Sample Storage Conditions Have an Impact on Inferred Microbiome Composition and Antimicrobial Resistance Patterns,Microbiology spectrum,2021,"antimicrobial resistance, bacteria, complex samples, freezing, metagenomics, microbial community composition, microbiome, mock community, parasite, sample storage, spiking, synthetic mock community",Experiment 168,Denmark,Not specified,NA,NA,Microbiome,EFO:0004982,Unspiked sewage samples (S1) at 16 hours (-20°C),Unspiked sewage samples (S1) at 64 hours (5°C),Unspiked S1 sample stored at a temperature of 5°C for 64 hours,1,1,NA,WMS,NA,Illumina,DESeq2,0.01,FALSE,NA,NA,NA,unchanged,NA,increased,decreased,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA -bsdb:1048/169/NA,Study 1048,laboratory experiment,34612701,10.1128%2FSpectrum.01387-21,https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8510183/,"Poulsen CS, Kaas RS, Aarestrup FM , Pamp SJ",Standard Sample Storage Conditions Have an Impact on Inferred Microbiome Composition and Antimicrobial Resistance Patterns,Microbiology spectrum,2021,"antimicrobial resistance, bacteria, complex samples, freezing, metagenomics, microbial community composition, microbiome, mock community, parasite, sample storage, spiking, synthetic mock community",Experiment 169,Denmark,Not specified,NA,NA,Microbiome,EFO:0004982,Unspiked sewage samples (S1) at 16 hours (-20°C),Unspiked sewage samples (S1) at 16 hours (22°C),Unspiked S1 sample stored at a temperature of 22°C for 16 hours,1,1,NA,WMS,NA,Illumina,DESeq2,0.01,FALSE,NA,NA,NA,unchanged,NA,decreased,unchanged,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA -bsdb:1048/170/NA,Study 1048,laboratory experiment,34612701,10.1128%2FSpectrum.01387-21,https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8510183/,"Poulsen CS, Kaas RS, Aarestrup FM , Pamp SJ",Standard Sample Storage Conditions Have an Impact on Inferred Microbiome Composition and Antimicrobial Resistance Patterns,Microbiology spectrum,2021,"antimicrobial resistance, bacteria, complex samples, freezing, metagenomics, microbial community composition, microbiome, mock community, parasite, sample storage, spiking, synthetic mock community",Experiment 170,Denmark,Not specified,NA,NA,Microbiome,EFO:0004982,Unspiked sewage samples (S1) at 16 hours (-20°C),Unspiked sewage samples (S1) at 64 hours (22°C),Unspiked S1 sample stored at a temperature of 22°C for 64 hours,1,1,NA,WMS,NA,Illumina,DESeq2,0.01,FALSE,NA,NA,NA,increased,NA,unchanged,increased,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA -bsdb:1048/171/NA,Study 1048,laboratory experiment,34612701,10.1128%2FSpectrum.01387-21,https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8510183/,"Poulsen CS, Kaas RS, Aarestrup FM , Pamp SJ",Standard Sample Storage Conditions Have an Impact on Inferred Microbiome Composition and Antimicrobial Resistance Patterns,Microbiology spectrum,2021,"antimicrobial resistance, bacteria, complex samples, freezing, metagenomics, microbial community composition, microbiome, mock community, parasite, sample storage, spiking, synthetic mock community",Experiment 171,Denmark,Not specified,NA,NA,Microbiome,EFO:0004982,Unspiked sewage samples (S1) at 64 hours (-20°C),Unspiked sewage samples (S1) at 16 hours (5°C),Unspiked S1 sample stored at a temperature of 5°C for 16 hours,1,1,NA,WMS,NA,Illumina,DESeq2,0.01,FALSE,NA,NA,NA,unchanged,NA,decreased,unchanged,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA -bsdb:1048/172/NA,Study 1048,laboratory experiment,34612701,10.1128%2FSpectrum.01387-21,https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8510183/,"Poulsen CS, Kaas RS, Aarestrup FM , Pamp SJ",Standard Sample Storage Conditions Have an Impact on Inferred Microbiome Composition and Antimicrobial Resistance Patterns,Microbiology spectrum,2021,"antimicrobial resistance, bacteria, complex samples, freezing, metagenomics, microbial community composition, microbiome, mock community, parasite, sample storage, spiking, synthetic mock community",Experiment 172,Denmark,Not specified,NA,NA,Microbiome,EFO:0004982,Unspiked sewage samples (S1) at 64 hours (-20°C),Unspiked sewage samples (S1) at 64 hours (5°C),Unspiked S1 sample stored at a temperature of 5°C for 64 hours,1,1,NA,WMS,NA,Illumina,DESeq2,0.01,FALSE,NA,NA,NA,unchanged,NA,increased,decreased,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA -bsdb:1048/173/NA,Study 1048,laboratory experiment,34612701,10.1128%2FSpectrum.01387-21,https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8510183/,"Poulsen CS, Kaas RS, Aarestrup FM , Pamp SJ",Standard Sample Storage Conditions Have an Impact on Inferred Microbiome Composition and Antimicrobial Resistance Patterns,Microbiology spectrum,2021,"antimicrobial resistance, bacteria, complex samples, freezing, metagenomics, microbial community composition, microbiome, mock community, parasite, sample storage, spiking, synthetic mock community",Experiment 173,Denmark,Not specified,NA,NA,Microbiome,EFO:0004982,Unspiked sewage samples (S1) at 64 hours (-20°C),Unspiked sewage samples (S1) at 16 hours (22°C),Unspiked S1 sample stored at a temperature of 22°C for 16 hours,1,1,NA,WMS,NA,Illumina,DESeq2,0.01,FALSE,NA,NA,NA,unchanged,NA,decreased,unchanged,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA -bsdb:1048/174/NA,Study 1048,laboratory experiment,34612701,10.1128%2FSpectrum.01387-21,https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8510183/,"Poulsen CS, Kaas RS, Aarestrup FM , Pamp SJ",Standard Sample Storage Conditions Have an Impact on Inferred Microbiome Composition and Antimicrobial Resistance Patterns,Microbiology spectrum,2021,"antimicrobial resistance, bacteria, complex samples, freezing, metagenomics, microbial community composition, microbiome, mock community, parasite, sample storage, spiking, synthetic mock community",Experiment 174,Denmark,Not specified,NA,NA,Microbiome,EFO:0004982,Unspiked sewage samples (S1) at 64 hours (-20°C),Unspiked sewage samples (S1) at 64 hours (22°C),Unspiked S1 sample stored at a temperature of 22°C for 64 hours,1,1,NA,WMS,NA,Illumina,DESeq2,0.01,FALSE,NA,NA,NA,increased,NA,unchanged,increased,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA -bsdb:1048/175/NA,Study 1048,laboratory experiment,34612701,10.1128%2FSpectrum.01387-21,https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8510183/,"Poulsen CS, Kaas RS, Aarestrup FM , Pamp SJ",Standard Sample Storage Conditions Have an Impact on Inferred Microbiome Composition and Antimicrobial Resistance Patterns,Microbiology spectrum,2021,"antimicrobial resistance, bacteria, complex samples, freezing, metagenomics, microbial community composition, microbiome, mock community, parasite, sample storage, spiking, synthetic mock community",Experiment 175,Denmark,Not specified,NA,NA,Microbiome,EFO:0004982,Unspiked sewage samples (S1) at 16 hours (5°C),Unspiked sewage samples (S1) at 64 hours (5°C),Unspiked S1 sample stored at a temperature of 5°C for 64 hours,1,1,NA,WMS,NA,Illumina,DESeq2,0.01,FALSE,NA,NA,NA,unchanged,NA,increased,decreased,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA -bsdb:1048/176/NA,Study 1048,laboratory experiment,34612701,10.1128%2FSpectrum.01387-21,https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8510183/,"Poulsen CS, Kaas RS, Aarestrup FM , Pamp SJ",Standard Sample Storage Conditions Have an Impact on Inferred Microbiome Composition and Antimicrobial Resistance Patterns,Microbiology spectrum,2021,"antimicrobial resistance, bacteria, complex samples, freezing, metagenomics, microbial community composition, microbiome, mock community, parasite, sample storage, spiking, synthetic mock community",Experiment 176,Denmark,Not specified,NA,NA,Microbiome,EFO:0004982,Unspiked sewage samples (S1) at 16 hours (5°C),Unspiked sewage samples (S1) at 16 hours (22°C),Unspiked S1 sample stored at a temperature of 22°C for 16 hours,1,1,NA,WMS,NA,Illumina,DESeq2,0.01,FALSE,NA,NA,NA,unchanged,NA,decreased,unchanged,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA -bsdb:1048/177/NA,Study 1048,laboratory experiment,34612701,10.1128%2FSpectrum.01387-21,https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8510183/,"Poulsen CS, Kaas RS, Aarestrup FM , Pamp SJ",Standard Sample Storage Conditions Have an Impact on Inferred Microbiome Composition and Antimicrobial Resistance Patterns,Microbiology spectrum,2021,"antimicrobial resistance, bacteria, complex samples, freezing, metagenomics, microbial community composition, microbiome, mock community, parasite, sample storage, spiking, synthetic mock community",Experiment 177,Denmark,Not specified,NA,NA,Microbiome,EFO:0004982,Unspiked sewage samples (S1) at 16 hours (5°C),Unspiked sewage samples (S1) at 64 hours (22°C),Unspiked S1 sample stored at a temperature of 22°C for 64 hours,1,1,NA,WMS,NA,Illumina,DESeq2,0.01,FALSE,NA,NA,NA,increased,NA,unchanged,increased,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA -bsdb:1048/178/NA,Study 1048,laboratory experiment,34612701,10.1128%2FSpectrum.01387-21,https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8510183/,"Poulsen CS, Kaas RS, Aarestrup FM , Pamp SJ",Standard Sample Storage Conditions Have an Impact on Inferred Microbiome Composition and Antimicrobial Resistance Patterns,Microbiology spectrum,2021,"antimicrobial resistance, bacteria, complex samples, freezing, metagenomics, microbial community composition, microbiome, mock community, parasite, sample storage, spiking, synthetic mock community",Experiment 178,Denmark,Not specified,NA,NA,Microbiome,EFO:0004982,Unspiked sewage samples (S1) at 64 hours (5°C),Unspiked sewage samples (S1) at 16 hours (22°C),Unspiked S1 sample stored at a temperature of 22°C for 16 hours,1,1,NA,WMS,NA,Illumina,DESeq2,0.01,FALSE,NA,NA,NA,increased,NA,decreased,increased,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA -bsdb:1048/179/NA,Study 1048,laboratory experiment,34612701,10.1128%2FSpectrum.01387-21,https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8510183/,"Poulsen CS, Kaas RS, Aarestrup FM , Pamp SJ",Standard Sample Storage Conditions Have an Impact on Inferred Microbiome Composition and Antimicrobial Resistance Patterns,Microbiology spectrum,2021,"antimicrobial resistance, bacteria, complex samples, freezing, metagenomics, microbial community composition, microbiome, mock community, parasite, sample storage, spiking, synthetic mock community",Experiment 179,Denmark,Not specified,NA,NA,Microbiome,EFO:0004982,Unspiked sewage samples (S1) at 64 hours (5°C),Unspiked sewage samples (S1) at 64 hours (22°C),Unspiked S1 sample stored at a temperature of 22°C for 64 hours,1,1,NA,WMS,NA,Illumina,DESeq2,0.01,FALSE,NA,NA,NA,increased,NA,increased,increased,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA -bsdb:1048/180/NA,Study 1048,laboratory experiment,34612701,10.1128%2FSpectrum.01387-21,https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8510183/,"Poulsen CS, Kaas RS, Aarestrup FM , Pamp SJ",Standard Sample Storage Conditions Have an Impact on Inferred Microbiome Composition and Antimicrobial Resistance Patterns,Microbiology spectrum,2021,"antimicrobial resistance, bacteria, complex samples, freezing, metagenomics, microbial community composition, microbiome, mock community, parasite, sample storage, spiking, synthetic mock community",Experiment 180,Denmark,Not specified,NA,NA,Microbiome,EFO:0004982,Unspiked sewage samples (S1) at 16 hours (22°C),Unspiked sewage samples (S1) at 64 hours (22°C),Unspiked S1 sample stored at a temperature of 22°C for 64 hours,1,1,NA,WMS,NA,Illumina,DESeq2,0.01,FALSE,NA,NA,NA,increased,NA,increased,increased,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA -bsdb:1048/181/NA,Study 1048,laboratory experiment,34612701,10.1128%2FSpectrum.01387-21,https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8510183/,"Poulsen CS, Kaas RS, Aarestrup FM , Pamp SJ",Standard Sample Storage Conditions Have an Impact on Inferred Microbiome Composition and Antimicrobial Resistance Patterns,Microbiology spectrum,2021,"antimicrobial resistance, bacteria, complex samples, freezing, metagenomics, microbial community composition, microbiome, mock community, parasite, sample storage, spiking, synthetic mock community",Experiment 181,Denmark,Not specified,NA,NA,Microbiome,EFO:0004982,Unspiked sewage samples (S2) at 0 hour,Unspiked sewage samples (S2) at 16 hours (-80°C),Unspiked S2 sample stored at a temperature of -80°C for 16 hours.,1,1,NA,WMS,NA,Illumina,DESeq2,0.01,FALSE,NA,NA,NA,unchanged,NA,unchanged,increased,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA -bsdb:1048/182/NA,Study 1048,laboratory experiment,34612701,10.1128%2FSpectrum.01387-21,https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8510183/,"Poulsen CS, Kaas RS, Aarestrup FM , Pamp SJ",Standard Sample Storage Conditions Have an Impact on Inferred Microbiome Composition and Antimicrobial Resistance Patterns,Microbiology spectrum,2021,"antimicrobial resistance, bacteria, complex samples, freezing, metagenomics, microbial community composition, microbiome, mock community, parasite, sample storage, spiking, synthetic mock community",Experiment 182,Denmark,Not specified,NA,NA,Microbiome,EFO:0004982,Unspiked sewage samples (S2) at 0 hour,Unspiked sewage samples (S2) at 64 hours (-80°C),Unspiked S2 sample stored at a temperature of -80°C for 64 hours.,1,1,NA,WMS,NA,Illumina,DESeq2,0.01,FALSE,NA,NA,NA,unchanged,NA,decreased,unchanged,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA -bsdb:1048/183/NA,Study 1048,laboratory experiment,34612701,10.1128%2FSpectrum.01387-21,https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8510183/,"Poulsen CS, Kaas RS, Aarestrup FM , Pamp SJ",Standard Sample Storage Conditions Have an Impact on Inferred Microbiome Composition and Antimicrobial Resistance Patterns,Microbiology spectrum,2021,"antimicrobial resistance, bacteria, complex samples, freezing, metagenomics, microbial community composition, microbiome, mock community, parasite, sample storage, spiking, synthetic mock community",Experiment 183,Denmark,Not specified,NA,NA,Microbiome,EFO:0004982,Unspiked sewage samples (S2) at 0 hour,Unspiked sewage samples (S2) at 16 hours (-20°C),Unspiked S2 sample stored at a temperature of -20°C for 16 hours.,1,1,NA,WMS,NA,Illumina,DESeq2,0.01,FALSE,NA,NA,NA,unchanged,NA,unchanged,increased,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA -bsdb:1048/184/NA,Study 1048,laboratory experiment,34612701,10.1128%2FSpectrum.01387-21,https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8510183/,"Poulsen CS, Kaas RS, Aarestrup FM , Pamp SJ",Standard Sample Storage Conditions Have an Impact on Inferred Microbiome Composition and Antimicrobial Resistance Patterns,Microbiology spectrum,2021,"antimicrobial resistance, bacteria, complex samples, freezing, metagenomics, microbial community composition, microbiome, mock community, parasite, sample storage, spiking, synthetic mock community",Experiment 184,Denmark,Not specified,NA,NA,Microbiome,EFO:0004982,Unspiked sewage samples (S2) at 0 hour,Unspiked sewage samples (S2) at 64 hours (-20°C),Unspiked S2 sample stored at a temperature of -20°C for 64 hours.,1,1,NA,WMS,NA,Illumina,DESeq2,0.01,FALSE,NA,NA,NA,unchanged,NA,decreased,unchanged,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA -bsdb:1048/185/NA,Study 1048,laboratory experiment,34612701,10.1128%2FSpectrum.01387-21,https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8510183/,"Poulsen CS, Kaas RS, Aarestrup FM , Pamp SJ",Standard Sample Storage Conditions Have an Impact on Inferred Microbiome Composition and Antimicrobial Resistance Patterns,Microbiology spectrum,2021,"antimicrobial resistance, bacteria, complex samples, freezing, metagenomics, microbial community composition, microbiome, mock community, parasite, sample storage, spiking, synthetic mock community",Experiment 185,Denmark,Not specified,NA,NA,Microbiome,EFO:0004982,Unspiked sewage samples (S2) at 0 hour,Unspiked sewage samples (S2) at 16 hours (5°C),Unspiked S2 sample stored at a temperature of 5°C for 16 hours.,1,1,NA,WMS,NA,Illumina,DESeq2,0.01,FALSE,NA,NA,NA,increased,NA,decreased,increased,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA -bsdb:1048/186/NA,Study 1048,laboratory experiment,34612701,10.1128%2FSpectrum.01387-21,https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8510183/,"Poulsen CS, Kaas RS, Aarestrup FM , Pamp SJ",Standard Sample Storage Conditions Have an Impact on Inferred Microbiome Composition and Antimicrobial Resistance Patterns,Microbiology spectrum,2021,"antimicrobial resistance, bacteria, complex samples, freezing, metagenomics, microbial community composition, microbiome, mock community, parasite, sample storage, spiking, synthetic mock community",Experiment 186,Denmark,Not specified,NA,NA,Microbiome,EFO:0004982,Unspiked sewage samples (S2) at 0 hour,Unspiked sewage samples (S2) at 64 hours (5°C),Unspiked S2 sample stored at a temperature of 5°C for 64 hours.,1,1,NA,WMS,NA,Illumina,DESeq2,0.01,FALSE,NA,NA,NA,decreased,NA,increased,decreased,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA -bsdb:1048/187/NA,Study 1048,laboratory experiment,34612701,10.1128%2FSpectrum.01387-21,https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8510183/,"Poulsen CS, Kaas RS, Aarestrup FM , Pamp SJ",Standard Sample Storage Conditions Have an Impact on Inferred Microbiome Composition and Antimicrobial Resistance Patterns,Microbiology spectrum,2021,"antimicrobial resistance, bacteria, complex samples, freezing, metagenomics, microbial community composition, microbiome, mock community, parasite, sample storage, spiking, synthetic mock community",Experiment 187,Denmark,Not specified,NA,NA,Microbiome,EFO:0004982,Unspiked sewage samples (S2) at 0 hour,Unspiked sewage samples (S2) at 16 hours (22°C),Unspiked S2 sample stored at a temperature of 22°C for 16 hours.,1,1,NA,WMS,NA,Illumina,DESeq2,0.01,FALSE,NA,NA,NA,increased,NA,unchanged,increased,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA -bsdb:1048/188/NA,Study 1048,laboratory experiment,34612701,10.1128%2FSpectrum.01387-21,https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8510183/,"Poulsen CS, Kaas RS, Aarestrup FM , Pamp SJ",Standard Sample Storage Conditions Have an Impact on Inferred Microbiome Composition and Antimicrobial Resistance Patterns,Microbiology spectrum,2021,"antimicrobial resistance, bacteria, complex samples, freezing, metagenomics, microbial community composition, microbiome, mock community, parasite, sample storage, spiking, synthetic mock community",Experiment 188,Denmark,Not specified,NA,NA,Microbiome,EFO:0004982,Unspiked sewage samples (S2) at 0 hour,Unspiked sewage samples (S2) at 64 hours (22°C),Unspiked S2 sample stored at a temperature of 22°C for 64 hours.,1,1,NA,WMS,NA,Illumina,DESeq2,0.01,FALSE,NA,NA,NA,unchanged,NA,unchanged,decreased,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA -bsdb:1048/189/NA,Study 1048,laboratory experiment,34612701,10.1128%2FSpectrum.01387-21,https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8510183/,"Poulsen CS, Kaas RS, Aarestrup FM , Pamp SJ",Standard Sample Storage Conditions Have an Impact on Inferred Microbiome Composition and Antimicrobial Resistance Patterns,Microbiology spectrum,2021,"antimicrobial resistance, bacteria, complex samples, freezing, metagenomics, microbial community composition, microbiome, mock community, parasite, sample storage, spiking, synthetic mock community",Experiment 189,Denmark,Not specified,NA,NA,Microbiome,EFO:0004982,Unspiked sewage samples (S2) at 16 hours (-80°C),Unspiked sewage samples (S2) at 64 hours (-80°C),Unspiked S2 sample stored at a temperature of -80°C for 64 hours.,1,1,NA,WMS,NA,Illumina,DESeq2,0.01,FALSE,NA,NA,NA,decreased,NA,decreased,decreased,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA -bsdb:1048/190/NA,Study 1048,laboratory experiment,34612701,10.1128%2FSpectrum.01387-21,https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8510183/,"Poulsen CS, Kaas RS, Aarestrup FM , Pamp SJ",Standard Sample Storage Conditions Have an Impact on Inferred Microbiome Composition and Antimicrobial Resistance Patterns,Microbiology spectrum,2021,"antimicrobial resistance, bacteria, complex samples, freezing, metagenomics, microbial community composition, microbiome, mock community, parasite, sample storage, spiking, synthetic mock community",Experiment 190,Denmark,Not specified,NA,NA,Microbiome,EFO:0004982,Unspiked sewage samples (S2) at 16 hours (-80°C),Unspiked sewage samples (S2) at 16 hours (-20°C),Unspiked S2 sample stored at a temperature of -20°C for 16 hours.,1,1,NA,WMS,NA,Illumina,DESeq2,0.01,FALSE,NA,NA,NA,unchanged,NA,decreased,decreased,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA -bsdb:1048/191/NA,Study 1048,laboratory experiment,34612701,10.1128%2FSpectrum.01387-21,https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8510183/,"Poulsen CS, Kaas RS, Aarestrup FM , Pamp SJ",Standard Sample Storage Conditions Have an Impact on Inferred Microbiome Composition and Antimicrobial Resistance Patterns,Microbiology spectrum,2021,"antimicrobial resistance, bacteria, complex samples, freezing, metagenomics, microbial community composition, microbiome, mock community, parasite, sample storage, spiking, synthetic mock community",Experiment 191,Denmark,Not specified,NA,NA,Microbiome,EFO:0004982,Unspiked sewage samples (S2) at 16 hours (-80°C),Unspiked sewage samples (S2) at 64 hours (-20°C),Unspiked S2 sample stored at a temperature of -20°C for 64 hours.,1,1,NA,WMS,NA,Illumina,DESeq2,0.01,FALSE,NA,NA,NA,unchanged,NA,decreased,decreased,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA -bsdb:1048/192/NA,Study 1048,laboratory experiment,34612701,10.1128%2FSpectrum.01387-21,https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8510183/,"Poulsen CS, Kaas RS, Aarestrup FM , Pamp SJ",Standard Sample Storage Conditions Have an Impact on Inferred Microbiome Composition and Antimicrobial Resistance Patterns,Microbiology spectrum,2021,"antimicrobial resistance, bacteria, complex samples, freezing, metagenomics, microbial community composition, microbiome, mock community, parasite, sample storage, spiking, synthetic mock community",Experiment 192,Denmark,Not specified,NA,NA,Microbiome,EFO:0004982,Unspiked sewage samples (S2) at 16 hours (-80°C),Unspiked sewage samples (S2) at 16 hours (5°C),Unspiked S2 sample stored at a temperature of 5°C for 16 hours.,1,1,NA,WMS,NA,Illumina,DESeq2,0.01,FALSE,NA,NA,NA,increased,NA,decreased,unchanged,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA -bsdb:1048/193/NA,Study 1048,laboratory experiment,34612701,10.1128%2FSpectrum.01387-21,https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8510183/,"Poulsen CS, Kaas RS, Aarestrup FM , Pamp SJ",Standard Sample Storage Conditions Have an Impact on Inferred Microbiome Composition and Antimicrobial Resistance Patterns,Microbiology spectrum,2021,"antimicrobial resistance, bacteria, complex samples, freezing, metagenomics, microbial community composition, microbiome, mock community, parasite, sample storage, spiking, synthetic mock community",Experiment 193,Denmark,Not specified,NA,NA,Microbiome,EFO:0004982,Unspiked sewage samples (S2) at 16 hours (-80°C),Unspiked sewage samples (S2) at 64 hours (5°C),Unspiked S2 sample stored at a temperature of 5°C for 64 hours.,1,1,NA,WMS,NA,Illumina,DESeq2,0.01,FALSE,NA,NA,NA,decreased,NA,increased,decreased,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA -bsdb:1048/194/NA,Study 1048,laboratory experiment,34612701,10.1128%2FSpectrum.01387-21,https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8510183/,"Poulsen CS, Kaas RS, Aarestrup FM , Pamp SJ",Standard Sample Storage Conditions Have an Impact on Inferred Microbiome Composition and Antimicrobial Resistance Patterns,Microbiology spectrum,2021,"antimicrobial resistance, bacteria, complex samples, freezing, metagenomics, microbial community composition, microbiome, mock community, parasite, sample storage, spiking, synthetic mock community",Experiment 194,Denmark,Not specified,NA,NA,Microbiome,EFO:0004982,Unspiked sewage samples (S2) at 16 hours (-80°C),Unspiked sewage samples (S2) at 16 hours (22°C),Unspiked S2 sample stored at a temperature of 22°C for 16 hours.,1,1,NA,WMS,NA,Illumina,DESeq2,0.01,FALSE,NA,NA,NA,increased,NA,decreased,increased,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA -bsdb:1048/195/NA,Study 1048,laboratory experiment,34612701,10.1128%2FSpectrum.01387-21,https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8510183/,"Poulsen CS, Kaas RS, Aarestrup FM , Pamp SJ",Standard Sample Storage Conditions Have an Impact on Inferred Microbiome Composition and Antimicrobial Resistance Patterns,Microbiology spectrum,2021,"antimicrobial resistance, bacteria, complex samples, freezing, metagenomics, microbial community composition, microbiome, mock community, parasite, sample storage, spiking, synthetic mock community",Experiment 195,Denmark,Not specified,NA,NA,Microbiome,EFO:0004982,Unspiked sewage samples (S2) at 16 hours (-80°C),Unspiked sewage samples (S2) at 64 hours (22°C),Unspiked S2 sample stored at a temperature of 22°C for 64 hours.,1,1,NA,WMS,NA,Illumina,DESeq2,0.01,FALSE,NA,NA,NA,unchanged,NA,unchanged,decreased,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA -bsdb:1048/196/NA,Study 1048,laboratory experiment,34612701,10.1128%2FSpectrum.01387-21,https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8510183/,"Poulsen CS, Kaas RS, Aarestrup FM , Pamp SJ",Standard Sample Storage Conditions Have an Impact on Inferred Microbiome Composition and Antimicrobial Resistance Patterns,Microbiology spectrum,2021,"antimicrobial resistance, bacteria, complex samples, freezing, metagenomics, microbial community composition, microbiome, mock community, parasite, sample storage, spiking, synthetic mock community",Experiment 196,Denmark,Not specified,NA,NA,Microbiome,EFO:0004982,Unspiked sewage samples (S2) at 64 hours (-80°C),Unspiked sewage samples (S2) at 16 hours (-20°C),Unspiked S2 sample stored at a temperature of -20°C for 16 hours.,1,1,NA,WMS,NA,Illumina,DESeq2,0.01,FALSE,NA,NA,NA,increased,NA,increased,increased,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA -bsdb:1048/197/NA,Study 1048,laboratory experiment,34612701,10.1128%2FSpectrum.01387-21,https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8510183/,"Poulsen CS, Kaas RS, Aarestrup FM , Pamp SJ",Standard Sample Storage Conditions Have an Impact on Inferred Microbiome Composition and Antimicrobial Resistance Patterns,Microbiology spectrum,2021,"antimicrobial resistance, bacteria, complex samples, freezing, metagenomics, microbial community composition, microbiome, mock community, parasite, sample storage, spiking, synthetic mock community",Experiment 197,Denmark,Not specified,NA,NA,Microbiome,EFO:0004982,Unspiked sewage samples (S2) at 64 hours (-80°C),Unspiked sewage samples (S2) at 64 hours (-20°C),Unspiked S2 sample stored at a temperature of -20°C for 64 hours.,1,1,NA,WMS,NA,Illumina,DESeq2,0.01,FALSE,NA,NA,NA,unchanged,NA,decreased,unchanged,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA -bsdb:1048/198/NA,Study 1048,laboratory experiment,34612701,10.1128%2FSpectrum.01387-21,https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8510183/,"Poulsen CS, Kaas RS, Aarestrup FM , Pamp SJ",Standard Sample Storage Conditions Have an Impact on Inferred Microbiome Composition and Antimicrobial Resistance Patterns,Microbiology spectrum,2021,"antimicrobial resistance, bacteria, complex samples, freezing, metagenomics, microbial community composition, microbiome, mock community, parasite, sample storage, spiking, synthetic mock community",Experiment 198,Denmark,Not specified,NA,NA,Microbiome,EFO:0004982,Unspiked sewage samples (S2) at 64 hours (-80°C),Unspiked sewage samples (S2) at 16 hours (5°C),Unspiked S2 sample stored at a temperature of 5°C for 16 hours.,1,1,NA,WMS,NA,Illumina,DESeq2,0.01,FALSE,NA,NA,NA,increased,NA,increased,increased,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA -bsdb:1048/199/NA,Study 1048,laboratory experiment,34612701,10.1128%2FSpectrum.01387-21,https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8510183/,"Poulsen CS, Kaas RS, Aarestrup FM , Pamp SJ",Standard Sample Storage Conditions Have an Impact on Inferred Microbiome Composition and Antimicrobial Resistance Patterns,Microbiology spectrum,2021,"antimicrobial resistance, bacteria, complex samples, freezing, metagenomics, microbial community composition, microbiome, mock community, parasite, sample storage, spiking, synthetic mock community",Experiment 199,Denmark,Not specified,NA,NA,Microbiome,EFO:0004982,Unspiked sewage samples (S2) at 64 hours (-80°C),Unspiked sewage samples (S2) at 64 hours (5°C),Unspiked S2 sample stored at a temperature of 5°C for 64 hours.,1,1,NA,WMS,NA,Illumina,DESeq2,0.01,FALSE,NA,NA,NA,decreased,NA,increased,decreased,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA -bsdb:1048/200/NA,Study 1048,laboratory experiment,34612701,10.1128%2FSpectrum.01387-21,https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8510183/,"Poulsen CS, Kaas RS, Aarestrup FM , Pamp SJ",Standard Sample Storage Conditions Have an Impact on Inferred Microbiome Composition and Antimicrobial Resistance Patterns,Microbiology spectrum,2021,"antimicrobial resistance, bacteria, complex samples, freezing, metagenomics, microbial community composition, microbiome, mock community, parasite, sample storage, spiking, synthetic mock community",Experiment 200,Denmark,Not specified,NA,NA,Microbiome,EFO:0004982,Unspiked sewage samples (S2) at 64 hours (-80°C),Unspiked sewage samples (S2) at 16 hours (22°C),Unspiked S2 sample stored at a temperature of 22°C for 16 hours.,1,1,NA,WMS,NA,Illumina,DESeq2,0.01,FALSE,NA,NA,NA,increased,NA,increased,increased,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA -bsdb:1048/201/NA,Study 1048,laboratory experiment,34612701,10.1128%2FSpectrum.01387-21,https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8510183/,"Poulsen CS, Kaas RS, Aarestrup FM , Pamp SJ",Standard Sample Storage Conditions Have an Impact on Inferred Microbiome Composition and Antimicrobial Resistance Patterns,Microbiology spectrum,2021,"antimicrobial resistance, bacteria, complex samples, freezing, metagenomics, microbial community composition, microbiome, mock community, parasite, sample storage, spiking, synthetic mock community",Experiment 201,Denmark,Not specified,NA,NA,Microbiome,EFO:0004982,Unspiked sewage samples (S2) at 64 hours (-80°C),Unspiked sewage samples (S2) at 64 hours (22°C),Unspiked S2 sample stored at a temperature of 22°C for 64 hours.,1,1,NA,WMS,NA,Illumina,DESeq2,0.01,FALSE,NA,NA,NA,unchanged,NA,increased,unchanged,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA -bsdb:1048/202/NA,Study 1048,laboratory experiment,34612701,10.1128%2FSpectrum.01387-21,https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8510183/,"Poulsen CS, Kaas RS, Aarestrup FM , Pamp SJ",Standard Sample Storage Conditions Have an Impact on Inferred Microbiome Composition and Antimicrobial Resistance Patterns,Microbiology spectrum,2021,"antimicrobial resistance, bacteria, complex samples, freezing, metagenomics, microbial community composition, microbiome, mock community, parasite, sample storage, spiking, synthetic mock community",Experiment 202,Denmark,Not specified,NA,NA,Microbiome,EFO:0004982,Unspiked sewage samples (S2) at 16 hours (-20°C),Unspiked sewage samples (S2) at 64 hours (-20°C),Unspiked S2 sample stored at a temperature of -20°C for 64 hours.,1,1,NA,WMS,NA,Illumina,DESeq2,0.01,FALSE,NA,NA,NA,unchanged,NA,decreased,decreased,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA -bsdb:1048/203/NA,Study 1048,laboratory experiment,34612701,10.1128%2FSpectrum.01387-21,https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8510183/,"Poulsen CS, Kaas RS, Aarestrup FM , Pamp SJ",Standard Sample Storage Conditions Have an Impact on Inferred Microbiome Composition and Antimicrobial Resistance Patterns,Microbiology spectrum,2021,"antimicrobial resistance, bacteria, complex samples, freezing, metagenomics, microbial community composition, microbiome, mock community, parasite, sample storage, spiking, synthetic mock community",Experiment 203,Denmark,Not specified,NA,NA,Microbiome,EFO:0004982,Unspiked sewage samples (S2) at 16 hours (-20°C),Unspiked sewage samples (S2) at 16 hours (5°C),Unspiked S2 sample stored at a temperature of 5°C for 16 hours.,1,1,NA,WMS,NA,Illumina,DESeq2,0.01,FALSE,NA,NA,NA,unchanged,NA,decreased,unchanged,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA -bsdb:1048/204/NA,Study 1048,laboratory experiment,34612701,10.1128%2FSpectrum.01387-21,https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8510183/,"Poulsen CS, Kaas RS, Aarestrup FM , Pamp SJ",Standard Sample Storage Conditions Have an Impact on Inferred Microbiome Composition and Antimicrobial Resistance Patterns,Microbiology spectrum,2021,"antimicrobial resistance, bacteria, complex samples, freezing, metagenomics, microbial community composition, microbiome, mock community, parasite, sample storage, spiking, synthetic mock community",Experiment 204,Denmark,Not specified,NA,NA,Microbiome,EFO:0004982,Unspiked sewage samples (S2) at 16 hours (-20°C),Unspiked sewage samples (S2) at 64 hours (5°C),Unspiked S2 sample stored at a temperature of 5°C for 64 hours.,1,1,NA,WMS,NA,Illumina,DESeq2,0.01,FALSE,NA,NA,NA,decreased,NA,increased,decreased,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA -bsdb:1048/205/NA,Study 1048,laboratory experiment,34612701,10.1128%2FSpectrum.01387-21,https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8510183/,"Poulsen CS, Kaas RS, Aarestrup FM , Pamp SJ",Standard Sample Storage Conditions Have an Impact on Inferred Microbiome Composition and Antimicrobial Resistance Patterns,Microbiology spectrum,2021,"antimicrobial resistance, bacteria, complex samples, freezing, metagenomics, microbial community composition, microbiome, mock community, parasite, sample storage, spiking, synthetic mock community",Experiment 205,Denmark,Not specified,NA,NA,Microbiome,EFO:0004982,Unspiked sewage samples (S2) at 16 hours (-20°C),Unspiked sewage samples (S2) at 16 hours (22°C),Unspiked S2 sample stored at a temperature of 22°C for 16 hours.,1,1,NA,WMS,NA,Illumina,DESeq2,0.01,FALSE,NA,NA,NA,increased,NA,unchanged,increased,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA -bsdb:1048/206/NA,Study 1048,laboratory experiment,34612701,10.1128%2FSpectrum.01387-21,https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8510183/,"Poulsen CS, Kaas RS, Aarestrup FM , Pamp SJ",Standard Sample Storage Conditions Have an Impact on Inferred Microbiome Composition and Antimicrobial Resistance Patterns,Microbiology spectrum,2021,"antimicrobial resistance, bacteria, complex samples, freezing, metagenomics, microbial community composition, microbiome, mock community, parasite, sample storage, spiking, synthetic mock community",Experiment 206,Denmark,Not specified,NA,NA,Microbiome,EFO:0004982,Unspiked sewage samples (S2) at 16 hours (-20°C),Unspiked sewage samples (S2) at 64 hours (22°C),Unspiked S2 sample stored at a temperature of 22°C for 64 hours.,1,1,NA,WMS,NA,Illumina,DESeq2,0.01,FALSE,NA,NA,NA,unchanged,NA,unchanged,decreased,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA -bsdb:1048/207/1,Study 1048,laboratory experiment,34612701,10.1128%2FSpectrum.01387-21,https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8510183/,"Poulsen CS, Kaas RS, Aarestrup FM , Pamp SJ",Standard Sample Storage Conditions Have an Impact on Inferred Microbiome Composition and Antimicrobial Resistance Patterns,Microbiology spectrum,2021,"antimicrobial resistance, bacteria, complex samples, freezing, metagenomics, microbial community composition, microbiome, mock community, parasite, sample storage, spiking, synthetic mock community",Experiment 207,Denmark,Not specified,NA,NA,Microbiome,EFO:0004982,Unspiked sewage samples (S2) at 64 hours (-20°C),Unspiked sewage samples (S2) at 16 hours (5°C),Unspiked S2 sample stored at a temperature of 5°C for 16 hours.,1,1,NA,WMS,NA,Illumina,DESeq2,0.01,FALSE,NA,NA,NA,increased,NA,increased,increased,NA,NA,Signature 1,Figure 4,18 April 2024,Bolanle,Bolanle,NA,increased,k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Tannerellaceae|g__Parabacteroides,2|976|200643|171549|2005525|375288,Complete,NA -bsdb:1048/207/2,Study 1048,laboratory experiment,34612701,10.1128%2FSpectrum.01387-21,https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8510183/,"Poulsen CS, Kaas RS, Aarestrup FM , Pamp SJ",Standard Sample Storage Conditions Have an Impact on Inferred Microbiome Composition and Antimicrobial Resistance Patterns,Microbiology spectrum,2021,"antimicrobial resistance, bacteria, complex samples, freezing, metagenomics, microbial community composition, microbiome, mock community, parasite, sample storage, spiking, synthetic mock community",Experiment 207,Denmark,Not specified,NA,NA,Microbiome,EFO:0004982,Unspiked sewage samples (S2) at 64 hours (-20°C),Unspiked sewage samples (S2) at 16 hours (5°C),Unspiked S2 sample stored at a temperature of 5°C for 16 hours.,1,1,NA,WMS,NA,Illumina,DESeq2,0.01,FALSE,NA,NA,NA,increased,NA,increased,increased,NA,NA,Signature 2,Figure 4,18 April 2024,Bolanle,Bolanle,Differential abundance of selected highly abundant bacteria between the storage conditions in unspiked sewage sample S2,decreased,"k__Bacteria|p__Campylobacterota|c__Epsilonproteobacteria|o__Campylobacterales|f__Arcobacteraceae|g__Arcobacter,k__Bacteria|p__Pseudomonadota|c__Gammaproteobacteria|o__Moraxellales|f__Moraxellaceae|g__Acinetobacter,k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella,k__Bacteria|p__Pseudomonadota|c__Gammaproteobacteria|o__Aeromonadales|f__Aeromonadaceae|g__Aeromonas",2|29547|3031852|213849|2808963|28196;2|1224|1236|2887326|468|469;2|976|200643|171549|171552|838;2|1224|1236|135624|84642|642,Complete,NA -bsdb:1048/208/NA,Study 1048,laboratory experiment,34612701,10.1128%2FSpectrum.01387-21,https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8510183/,"Poulsen CS, Kaas RS, Aarestrup FM , Pamp SJ",Standard Sample Storage Conditions Have an Impact on Inferred Microbiome Composition and Antimicrobial Resistance Patterns,Microbiology spectrum,2021,"antimicrobial resistance, bacteria, complex samples, freezing, metagenomics, microbial community composition, microbiome, mock community, parasite, sample storage, spiking, synthetic mock community",Experiment 208,Denmark,Not specified,NA,NA,Microbiome,EFO:0004982,Unspiked sewage samples (S2) at 64 hours (-20°C),Unspiked sewage samples (S2) at 64 hours (5°C),Unspiked S2 sample stored at a temperature of 5°C for 64 hours.,1,1,NA,WMS,NA,Illumina,DESeq2,0.01,FALSE,NA,NA,NA,decreased,NA,increased,decreased,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA -bsdb:1048/209/NA,Study 1048,laboratory experiment,34612701,10.1128%2FSpectrum.01387-21,https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8510183/,"Poulsen CS, Kaas RS, Aarestrup FM , Pamp SJ",Standard Sample Storage Conditions Have an Impact on Inferred Microbiome Composition and Antimicrobial Resistance Patterns,Microbiology spectrum,2021,"antimicrobial resistance, bacteria, complex samples, freezing, metagenomics, microbial community composition, microbiome, mock community, parasite, sample storage, spiking, synthetic mock community",Experiment 209,Denmark,Not specified,NA,NA,Microbiome,EFO:0004982,Unspiked sewage samples (S2) at 64 hours (-20°C),Unspiked sewage samples (S2) at 16 hours (22°C),Unspiked S2 sample stored at a temperature of 22°C for 16 hours.,1,1,NA,WMS,NA,Illumina,DESeq2,0.01,FALSE,NA,NA,NA,increased,NA,increased,increased,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA -bsdb:1048/210/NA,Study 1048,laboratory experiment,34612701,10.1128%2FSpectrum.01387-21,https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8510183/,"Poulsen CS, Kaas RS, Aarestrup FM , Pamp SJ",Standard Sample Storage Conditions Have an Impact on Inferred Microbiome Composition and Antimicrobial Resistance Patterns,Microbiology spectrum,2021,"antimicrobial resistance, bacteria, complex samples, freezing, metagenomics, microbial community composition, microbiome, mock community, parasite, sample storage, spiking, synthetic mock community",Experiment 210,Denmark,Not specified,NA,NA,Microbiome,EFO:0004982,Unspiked sewage samples (S2) at 64 hours (-20°C),Unspiked sewage samples (S2) at 64 hours (22°C),Unspiked S2 sample stored at a temperature of 22°C for 64 hours.,1,1,NA,WMS,NA,Illumina,DESeq2,0.01,FALSE,NA,NA,NA,unchanged,NA,increased,decreased,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA -bsdb:1048/211/NA,Study 1048,laboratory experiment,34612701,10.1128%2FSpectrum.01387-21,https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8510183/,"Poulsen CS, Kaas RS, Aarestrup FM , Pamp SJ",Standard Sample Storage Conditions Have an Impact on Inferred Microbiome Composition and Antimicrobial Resistance Patterns,Microbiology spectrum,2021,"antimicrobial resistance, bacteria, complex samples, freezing, metagenomics, microbial community composition, microbiome, mock community, parasite, sample storage, spiking, synthetic mock community",Experiment 211,Denmark,Not specified,NA,NA,Microbiome,EFO:0004982,Unspiked sewage samples (S2) at 16 hours (5°C),Unspiked sewage samples (S2) at 64 hours (5°C),Unspiked S2 sample stored at a temperature of 5°C for 64 hours.,1,1,NA,WMS,NA,Illumina,DESeq2,0.01,FALSE,NA,NA,NA,decreased,NA,increased,decreased,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA -bsdb:1048/212/NA,Study 1048,laboratory experiment,34612701,10.1128%2FSpectrum.01387-21,https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8510183/,"Poulsen CS, Kaas RS, Aarestrup FM , Pamp SJ",Standard Sample Storage Conditions Have an Impact on Inferred Microbiome Composition and Antimicrobial Resistance Patterns,Microbiology spectrum,2021,"antimicrobial resistance, bacteria, complex samples, freezing, metagenomics, microbial community composition, microbiome, mock community, parasite, sample storage, spiking, synthetic mock community",Experiment 212,Denmark,Not specified,NA,NA,Microbiome,EFO:0004982,Unspiked sewage samples (S2) at 16 hours (5°C),Unspiked sewage samples (S2) at 16 hours (22°C),Unspiked S2 sample stored at a temperature of 22°C for 16 hours.,1,1,NA,WMS,NA,Illumina,DESeq2,0.01,FALSE,NA,NA,NA,increased,NA,increased,increased,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA -bsdb:1048/213/NA,Study 1048,laboratory experiment,34612701,10.1128%2FSpectrum.01387-21,https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8510183/,"Poulsen CS, Kaas RS, Aarestrup FM , Pamp SJ",Standard Sample Storage Conditions Have an Impact on Inferred Microbiome Composition and Antimicrobial Resistance Patterns,Microbiology spectrum,2021,"antimicrobial resistance, bacteria, complex samples, freezing, metagenomics, microbial community composition, microbiome, mock community, parasite, sample storage, spiking, synthetic mock community",Experiment 213,Denmark,Not specified,NA,NA,Microbiome,EFO:0004982,Unspiked sewage samples (S2) at 16 hours (5°C),Unspiked sewage samples (S2) at 64 hours (22°C),Unspiked S2 sample stored at a temperature of 22°C for 64 hours.,1,1,NA,WMS,NA,Illumina,DESeq2,0.01,FALSE,NA,NA,NA,unchanged,NA,increased,decreased,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA -bsdb:1048/214/NA,Study 1048,laboratory experiment,34612701,10.1128%2FSpectrum.01387-21,https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8510183/,"Poulsen CS, Kaas RS, Aarestrup FM , Pamp SJ",Standard Sample Storage Conditions Have an Impact on Inferred Microbiome Composition and Antimicrobial Resistance Patterns,Microbiology spectrum,2021,"antimicrobial resistance, bacteria, complex samples, freezing, metagenomics, microbial community composition, microbiome, mock community, parasite, sample storage, spiking, synthetic mock community",Experiment 214,Denmark,Not specified,NA,NA,Microbiome,EFO:0004982,Unspiked sewage samples (S2) at 64 hours (5°C),Unspiked sewage samples (S2) at 16 hours (22°C),Unspiked S2 sample stored at a temperature of 22°C for 16 hours.,1,1,NA,WMS,NA,Illumina,DESeq2,0.01,FALSE,NA,NA,NA,increased,NA,decreased,increased,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA -bsdb:1048/215/NA,Study 1048,laboratory experiment,34612701,10.1128%2FSpectrum.01387-21,https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8510183/,"Poulsen CS, Kaas RS, Aarestrup FM , Pamp SJ",Standard Sample Storage Conditions Have an Impact on Inferred Microbiome Composition and Antimicrobial Resistance Patterns,Microbiology spectrum,2021,"antimicrobial resistance, bacteria, complex samples, freezing, metagenomics, microbial community composition, microbiome, mock community, parasite, sample storage, spiking, synthetic mock community",Experiment 215,Denmark,Not specified,NA,NA,Microbiome,EFO:0004982,Unspiked sewage samples (S2) at 64 hours (5°C),Unspiked sewage samples (S2) at 64 hours (22°C),Unspiked S2 sample stored at a temperature of 22°C for 64 hours.,1,1,NA,WMS,NA,Illumina,DESeq2,0.01,FALSE,NA,NA,NA,increased,NA,decreased,unchanged,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA -bsdb:1048/216/NA,Study 1048,laboratory experiment,34612701,10.1128%2FSpectrum.01387-21,https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8510183/,"Poulsen CS, Kaas RS, Aarestrup FM , Pamp SJ",Standard Sample Storage Conditions Have an Impact on Inferred Microbiome Composition and Antimicrobial Resistance Patterns,Microbiology spectrum,2021,"antimicrobial resistance, bacteria, complex samples, freezing, metagenomics, microbial community composition, microbiome, mock community, parasite, sample storage, spiking, synthetic mock community",Experiment 216,Denmark,Not specified,NA,NA,Microbiome,EFO:0004982,Unspiked sewage samples (S2) at 16 hours (22°C),Unspiked sewage samples (S2) at 64 hours (22°C),Unspiked S2 sample stored at a temperature of 22°C for 64 hours.,1,1,NA,WMS,NA,Illumina,DESeq2,0.01,FALSE,NA,NA,NA,decreased,NA,decreased,decreased,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA bsdb:1049/1/1,Study 1049,time series / longitudinal observational,37864204,10.1186/s40168-023-01671-2,NA,"Thomsen M, Künstner A, Wohlers I, Olbrich M, Lenfers T, Osumi T, Shimazaki Y, Nishifuji K, Ibrahim SM, Watson A, Busch H , Hirose M",A comprehensive analysis of gut and skin microbiota in canine atopic dermatitis in Shiba Inu dogs,Microbiome,2023,"16S rRNA, Canine atopic dermatitis, Fusobacterium, JAK inhibitor, Megamonas, Mitochondrial DNA, Mitochondrial haplogroup, Shiba Inu dogs, Skin and gut microbiota, Staphylococcus",Experiment 1,Japan,Canis lupus familiaris,Skin of abdomen,UBERON:0001416,Atopic eczema,EFO:0000274,Healthy dogs,cADtreat dogs,Dogs that were already diagnosed with cAD (canine atopic dermatitis) before the study cohort recruitment and had been on oclacitinib treatment,20,10,NA,16S,12,Illumina,Beta Binomial Regression,0.1,TRUE,NA,NA,NA,NA,unchanged,NA,NA,NA,NA,Signature 1,"Table S4, Table S3",29 March 2024,Deacme,"Deacme,KateRasheed",Differentially abundant bacterial taxa at the genus level between two groups; healthy dogs and cADtreat dogs,increased,"k__Bacteria|k__Bacillati|p__Actinomycetota,k__Bacteria|k__Pseudomonadati|p__Bacteroidota",2|1783272|201174;2|3379134|976,Complete,Svetlana up bsdb:1049/1/2,Study 1049,time series / longitudinal observational,37864204,10.1186/s40168-023-01671-2,NA,"Thomsen M, Künstner A, Wohlers I, Olbrich M, Lenfers T, Osumi T, Shimazaki Y, Nishifuji K, Ibrahim SM, Watson A, Busch H , Hirose M",A comprehensive analysis of gut and skin microbiota in canine atopic dermatitis in Shiba Inu dogs,Microbiome,2023,"16S rRNA, Canine atopic dermatitis, Fusobacterium, JAK inhibitor, Megamonas, Mitochondrial DNA, Mitochondrial haplogroup, Shiba Inu dogs, Skin and gut microbiota, Staphylococcus",Experiment 1,Japan,Canis lupus familiaris,Skin of abdomen,UBERON:0001416,Atopic eczema,EFO:0000274,Healthy dogs,cADtreat dogs,Dogs that were already diagnosed with cAD (canine atopic dermatitis) before the study cohort recruitment and had been on oclacitinib treatment,20,10,NA,16S,12,Illumina,Beta Binomial Regression,0.1,TRUE,NA,NA,NA,NA,unchanged,NA,NA,NA,NA,Signature 2,"Table S4, Table S3",22 January 2025,KateRasheed,KateRasheed,Differentially abundant bacterial taxa at the genus level between two groups; healthy dogs and cADtreat dogs,decreased,"k__Bacteria|k__Bacillati|p__Actinomycetota|c__Actinomycetes|o__Micrococcales|f__Micrococcaceae|g__Arthrobacter,k__Bacteria|k__Bacillati|p__Actinomycetota|c__Actinomycetes|o__Mycobacteriales|f__Corynebacteriaceae|g__Corynebacterium,k__Bacteria|k__Pseudomonadati|p__Pseudomonadota",2|1783272|201174|1760|85006|1268|1663;2|1783272|201174|1760|85007|1653|1716;2|3379134|1224,Complete,Svetlana up bsdb:1049/2/1,Study 1049,time series / longitudinal observational,37864204,10.1186/s40168-023-01671-2,NA,"Thomsen M, Künstner A, Wohlers I, Olbrich M, Lenfers T, Osumi T, Shimazaki Y, Nishifuji K, Ibrahim SM, Watson A, Busch H , Hirose M",A comprehensive analysis of gut and skin microbiota in canine atopic dermatitis in Shiba Inu dogs,Microbiome,2023,"16S rRNA, Canine atopic dermatitis, Fusobacterium, JAK inhibitor, Megamonas, Mitochondrial DNA, Mitochondrial haplogroup, Shiba Inu dogs, Skin and gut microbiota, Staphylococcus",Experiment 2,Japan,Canis lupus familiaris,Skin of abdomen,UBERON:0001416,Atopic eczema,EFO:0000274,cADpre dogs,cADpost dogs,cADpre dogs that were consequently placed under oclacitinib treatment for two weeks after the diagnosis,10,10,NA,16S,12,Illumina,Beta Binomial Regression,0.1,TRUE,NA,NA,NA,NA,unchanged,NA,NA,NA,NA,Signature 1,"Table S4, Table S3",29 March 2024,Deacme,"Deacme,KateRasheed",Differentially abundant bacterial taxa at the genus level between two groups; cADpre dogs and cADpost dogs,decreased,"k__Bacteria|k__Bacillati|p__Actinomycetota|c__Actinomycetes|o__Micrococcales|f__Micrococcaceae|g__Arthrobacter,k__Bacteria|k__Bacillati|p__Bacillota|c__Bacilli|o__Bacillales|f__Bacillaceae|g__Bacillus,k__Bacteria|k__Thermotogati|p__Deinococcota|c__Deinococci|o__Deinococcales|f__Deinococcaceae|g__Deinococcus,k__Bacteria|k__Pseudomonadati|p__Pseudomonadota|c__Gammaproteobacteria|o__Pseudomonadales|f__Pseudomonadaceae|g__Pseudomonas,k__Bacteria|k__Pseudomonadati|p__Pseudomonadota|c__Alphaproteobacteria|o__Rhodospirillales|f__Azospirillaceae|g__Skermanella,k__Bacteria|k__Pseudomonadati|p__Pseudomonadota,k__Bacteria|k__Pseudomonadati|p__Bacteroidota,k__Bacteria|k__Thermotogati|p__Deinococcota",2|1783272|201174|1760|85006|1268|1663;2|1783272|1239|91061|1385|186817|1386;2|3384194|1297|188787|118964|183710|1298;2|3379134|1224|1236|72274|135621|286;2|3379134|1224|28211|204441|2829815|204447;2|3379134|1224;2|3379134|976;2|3384194|1297,Complete,Svetlana up @@ -5685,28 +5434,6 @@ bsdb:1049/43/1,Study 1049,time series / longitudinal observational,37864204,10.1 bsdb:1049/44/1,Study 1049,time series / longitudinal observational,37864204,10.1186/s40168-023-01671-2,NA,"Thomsen M, Künstner A, Wohlers I, Olbrich M, Lenfers T, Osumi T, Shimazaki Y, Nishifuji K, Ibrahim SM, Watson A, Busch H , Hirose M",A comprehensive analysis of gut and skin microbiota in canine atopic dermatitis in Shiba Inu dogs,Microbiome,2023,"16S rRNA, Canine atopic dermatitis, Fusobacterium, JAK inhibitor, Megamonas, Mitochondrial DNA, Mitochondrial haplogroup, Shiba Inu dogs, Skin and gut microbiota, Staphylococcus",Experiment 44,Japan,Canis lupus familiaris,Ventral side of post-anal tail,UBERON:0018691,Atopic eczema,EFO:0000274,Healthy dogs,cADtreat dogs,Dogs that were already diagnosed with cAD (canine atopic dermatitis) before the study cohort recruitment and had been on oclacitinib treatment,20,10,NA,16S,12,Illumina,ANCOM,0.1,TRUE,NA,NA,NA,NA,unchanged,NA,NA,NA,NA,Signature 1,"Supplementary Table S7, Supplementary Table S4 and Figure 3",6 April 2024,Deacme,"Deacme,KateRasheed",Statistical summary of differentially abundant taxa between dog groups.,decreased,"k__Bacteria|k__Bacillati|p__Bacillota|c__Bacilli|o__Bacillales|f__Staphylococcaceae|g__Staphylococcus|s__Staphylococcus equorum,k__Bacteria|k__Pseudomonadati|p__Pseudomonadota|c__Gammaproteobacteria|o__Moraxellales|f__Moraxellaceae|g__Moraxella",2|1783272|1239|91061|1385|90964|1279|246432;2|3379134|1224|1236|2887326|468|475,Complete,Svetlana up bsdb:1049/44/2,Study 1049,time series / longitudinal observational,37864204,10.1186/s40168-023-01671-2,NA,"Thomsen M, Künstner A, Wohlers I, Olbrich M, Lenfers T, Osumi T, Shimazaki Y, Nishifuji K, Ibrahim SM, Watson A, Busch H , Hirose M",A comprehensive analysis of gut and skin microbiota in canine atopic dermatitis in Shiba Inu dogs,Microbiome,2023,"16S rRNA, Canine atopic dermatitis, Fusobacterium, JAK inhibitor, Megamonas, Mitochondrial DNA, Mitochondrial haplogroup, Shiba Inu dogs, Skin and gut microbiota, Staphylococcus",Experiment 44,Japan,Canis lupus familiaris,Ventral side of post-anal tail,UBERON:0018691,Atopic eczema,EFO:0000274,Healthy dogs,cADtreat dogs,Dogs that were already diagnosed with cAD (canine atopic dermatitis) before the study cohort recruitment and had been on oclacitinib treatment,20,10,NA,16S,12,Illumina,ANCOM,0.1,TRUE,NA,NA,NA,NA,unchanged,NA,NA,NA,NA,Signature 2,"Supplementary Table S7, Supplementary Table S4 and Figure 3",6 April 2024,Deacme,"Deacme,KateRasheed",Statistical summary of differentially abundant taxa between dog groups.,increased,"k__Bacteria|k__Bacillati|p__Bacillota|c__Bacilli|o__Bacillales|f__Staphylococcaceae|g__Staphylococcus|s__Staphylococcus epidermidis,k__Bacteria|k__Bacillati|p__Bacillota|c__Bacilli|o__Bacillales|f__Staphylococcaceae|g__Staphylococcus|s__Staphylococcus hominis,k__Bacteria|k__Pseudomonadati|p__Pseudomonadota|c__Betaproteobacteria|o__Burkholderiales|f__Burkholderiaceae|g__Lautropia",2|1783272|1239|91061|1385|90964|1279|1282;2|1783272|1239|91061|1385|90964|1279|1290;2|3379134|1224|28216|80840|119060|47670,Complete,Svetlana up bsdb:1049/45/1,Study 1049,time series / longitudinal observational,37864204,10.1186/s40168-023-01671-2,NA,"Thomsen M, Künstner A, Wohlers I, Olbrich M, Lenfers T, Osumi T, Shimazaki Y, Nishifuji K, Ibrahim SM, Watson A, Busch H , Hirose M",A comprehensive analysis of gut and skin microbiota in canine atopic dermatitis in Shiba Inu dogs,Microbiome,2023,"16S rRNA, Canine atopic dermatitis, Fusobacterium, JAK inhibitor, Megamonas, Mitochondrial DNA, Mitochondrial haplogroup, Shiba Inu dogs, Skin and gut microbiota, Staphylococcus",Experiment 45,Japan,Canis lupus familiaris,Ventral side of post-anal tail,UBERON:0018691,Atopic eczema,EFO:0000274,cADpre dogs,cADpost dogs,cADpre dogs that were consequently placed under oclacitinib treatment for two weeks after the diagnosis,10,10,NA,16S,12,Illumina,ANCOM,0.1,TRUE,NA,NA,NA,NA,unchanged,NA,NA,NA,NA,Signature 1,Supplementary Table S7 and Figure 3,6 April 2024,Deacme,"Deacme,KateRasheed",Statistical summary of differentially abundant Staphylococcus spp. between dog groups.,increased,k__Bacteria|k__Bacillati|p__Bacillota|c__Bacilli|o__Bacillales|f__Staphylococcaceae|g__Staphylococcus|s__Staphylococcus hominis,2|1783272|1239|91061|1385|90964|1279|1290,Complete,Svetlana up -bsdb:1049/46/1,Study 1049,time series / longitudinal observational,37864204,10.1186/s40168-023-01671-2,NA,"Thomsen M, Künstner A, Wohlers I, Olbrich M, Lenfers T, Osumi T, Shimazaki Y, Nishifuji K, Ibrahim SM, Watson A, Busch H , Hirose M",A comprehensive analysis of gut and skin microbiota in canine atopic dermatitis in Shiba Inu dogs,Microbiome,2023,"16S rRNA, Canine atopic dermatitis, Fusobacterium, JAK inhibitor, Megamonas, Mitochondrial DNA, Mitochondrial haplogroup, Shiba Inu dogs, Skin and gut microbiota, Staphylococcus",Experiment 46,Japan,Canis lupus familiaris,Mouth,UBERON:0000165,Atopic eczema,EFO:0000274,Healthy dogs,cADtreat dogs,Dogs that were already diagnosed with cAD (canine atopic dermatitis) before the study cohort recruitment and had been on oclacitinib treatment,20,10,NA,16S,12,Illumina,ANCOM,0.1,TRUE,NA,NA,NA,NA,unchanged,NA,NA,NA,NA,Signature 1,Supplementary Table S3,23 January 2025,KateRasheed,KateRasheed,Statistical summary of differentially abundant taxa between dog groups.,increased,k__Bacteria|k__Pseudomonadati|p__Pseudomonadota,2|3379134|1224,Complete,Svetlana up -bsdb:1049/47/1,Study 1049,time series / longitudinal observational,37864204,10.1186/s40168-023-01671-2,NA,"Thomsen M, Künstner A, Wohlers I, Olbrich M, Lenfers T, Osumi T, Shimazaki Y, Nishifuji K, Ibrahim SM, Watson A, Busch H , Hirose M",A comprehensive analysis of gut and skin microbiota in canine atopic dermatitis in Shiba Inu dogs,Microbiome,2023,"16S rRNA, Canine atopic dermatitis, Fusobacterium, JAK inhibitor, Megamonas, Mitochondrial DNA, Mitochondrial haplogroup, Shiba Inu dogs, Skin and gut microbiota, Staphylococcus",Experiment 47,Japan,Canis lupus familiaris,Abdomen,UBERON:0000916,Atopic eczema,EFO:0000274,Healthy dogs,cADpre dogs,Dogs that were newly diagnosed with cAD (canine atopic dermatitis) without any previous medical treatments,20,10,NA,16S,12,Illumina,ANOVA,0.05,FALSE,NA,NA,NA,NA,unchanged,NA,NA,NA,NA,Signature 1,Fig. 1C,23 January 2025,KateRasheed,KateRasheed,Differentially abundant taxa between dogs using ANOVA,increased,k__Bacteria|k__Bacillati|p__Bacillota|c__Bacilli|o__Bacillales|f__Staphylococcaceae|g__Staphylococcus,2|1783272|1239|91061|1385|90964|1279,Complete,Svetlana up -bsdb:1049/48/1,Study 1049,time series / longitudinal observational,37864204,10.1186/s40168-023-01671-2,NA,"Thomsen M, Künstner A, Wohlers I, Olbrich M, Lenfers T, Osumi T, Shimazaki Y, Nishifuji K, Ibrahim SM, Watson A, Busch H , Hirose M",A comprehensive analysis of gut and skin microbiota in canine atopic dermatitis in Shiba Inu dogs,Microbiome,2023,"16S rRNA, Canine atopic dermatitis, Fusobacterium, JAK inhibitor, Megamonas, Mitochondrial DNA, Mitochondrial haplogroup, Shiba Inu dogs, Skin and gut microbiota, Staphylococcus",Experiment 48,Japan,Canis lupus familiaris,Abdomen,UBERON:0000916,Atopic eczema,EFO:0000274,cADpre dogs,cADpost dogs,cADpre dogs that were consequently placed under oclacitinib treatment for two weeks after the diagnosis,10,10,NA,16S,12,Illumina,ANOVA,0.05,FALSE,NA,NA,NA,NA,unchanged,NA,NA,NA,NA,Signature 1,Fig. 1C,23 January 2025,KateRasheed,KateRasheed,Differentially abundant taxa between dogs using ANOVA,decreased,k__Bacteria|k__Bacillati|p__Bacillota|c__Bacilli|o__Bacillales|f__Staphylococcaceae|g__Staphylococcus,2|1783272|1239|91061|1385|90964|1279,Complete,Svetlana up -bsdb:1049/49/1,Study 1049,time series / longitudinal observational,37864204,10.1186/s40168-023-01671-2,NA,"Thomsen M, Künstner A, Wohlers I, Olbrich M, Lenfers T, Osumi T, Shimazaki Y, Nishifuji K, Ibrahim SM, Watson A, Busch H , Hirose M",A comprehensive analysis of gut and skin microbiota in canine atopic dermatitis in Shiba Inu dogs,Microbiome,2023,"16S rRNA, Canine atopic dermatitis, Fusobacterium, JAK inhibitor, Megamonas, Mitochondrial DNA, Mitochondrial haplogroup, Shiba Inu dogs, Skin and gut microbiota, Staphylococcus",Experiment 49,Japan,Canis lupus familiaris,Axilla,UBERON:0009472,Atopic eczema,EFO:0000274,Healthy dogs,cADpre dogs,Dogs that were newly diagnosed with cAD (canine atopic dermatitis) without any previous medical treatments,20,10,NA,16S,12,Illumina,ANOVA,0.05,FALSE,NA,NA,NA,NA,unchanged,NA,NA,NA,NA,Signature 1,Fig. 1C,23 January 2025,KateRasheed,KateRasheed,Differentially abundant taxa between dogs using ANOVA,increased,k__Bacteria|k__Bacillati|p__Bacillota|c__Bacilli|o__Bacillales|f__Staphylococcaceae|g__Staphylococcus,2|1783272|1239|91061|1385|90964|1279,Complete,Svetlana up -bsdb:1049/50/1,Study 1049,time series / longitudinal observational,37864204,10.1186/s40168-023-01671-2,NA,"Thomsen M, Künstner A, Wohlers I, Olbrich M, Lenfers T, Osumi T, Shimazaki Y, Nishifuji K, Ibrahim SM, Watson A, Busch H , Hirose M",A comprehensive analysis of gut and skin microbiota in canine atopic dermatitis in Shiba Inu dogs,Microbiome,2023,"16S rRNA, Canine atopic dermatitis, Fusobacterium, JAK inhibitor, Megamonas, Mitochondrial DNA, Mitochondrial haplogroup, Shiba Inu dogs, Skin and gut microbiota, Staphylococcus",Experiment 50,Japan,Canis lupus familiaris,Brachialis muscle,UBERON:0001506,Atopic eczema,EFO:0000274,Healthy dogs,cADpre dogs,Dogs that were newly diagnosed with cAD (canine atopic dermatitis) without any previous medical treatments,20,10,NA,16S,12,Illumina,ANOVA,0.05,FALSE,NA,NA,NA,NA,decreased,NA,NA,NA,NA,Signature 1,Fig. 1C,23 January 2025,KateRasheed,KateRasheed,Differentially abundant taxa between dogs using ANOVA,increased,k__Bacteria|k__Bacillati|p__Bacillota|c__Bacilli|o__Bacillales|f__Staphylococcaceae|g__Staphylococcus,2|1783272|1239|91061|1385|90964|1279,Complete,Svetlana up -bsdb:1049/51/1,Study 1049,time series / longitudinal observational,37864204,10.1186/s40168-023-01671-2,NA,"Thomsen M, Künstner A, Wohlers I, Olbrich M, Lenfers T, Osumi T, Shimazaki Y, Nishifuji K, Ibrahim SM, Watson A, Busch H , Hirose M",A comprehensive analysis of gut and skin microbiota in canine atopic dermatitis in Shiba Inu dogs,Microbiome,2023,"16S rRNA, Canine atopic dermatitis, Fusobacterium, JAK inhibitor, Megamonas, Mitochondrial DNA, Mitochondrial haplogroup, Shiba Inu dogs, Skin and gut microbiota, Staphylococcus",Experiment 51,Japan,Canis lupus familiaris,Brachialis muscle,UBERON:0001506,Atopic eczema,EFO:0000274,cADpre dogs,cADpost dogs,cADpre dogs that were consequently placed under oclacitinib treatment for two weeks after the diagnosis,10,10,NA,16S,12,Illumina,ANOVA,0.05,FALSE,NA,NA,NA,NA,unchanged,NA,NA,NA,NA,Signature 1,Fig. 1C,23 January 2025,KateRasheed,KateRasheed,Differentially abundant taxa between dogs using ANOVA,decreased,k__Bacteria|k__Bacillati|p__Bacillota|c__Bacilli|o__Bacillales|f__Staphylococcaceae|g__Staphylococcus,2|1783272|1239|91061|1385|90964|1279,Complete,Svetlana up -bsdb:1049/52/1,Study 1049,time series / longitudinal observational,37864204,10.1186/s40168-023-01671-2,NA,"Thomsen M, Künstner A, Wohlers I, Olbrich M, Lenfers T, Osumi T, Shimazaki Y, Nishifuji K, Ibrahim SM, Watson A, Busch H , Hirose M",A comprehensive analysis of gut and skin microbiota in canine atopic dermatitis in Shiba Inu dogs,Microbiome,2023,"16S rRNA, Canine atopic dermatitis, Fusobacterium, JAK inhibitor, Megamonas, Mitochondrial DNA, Mitochondrial haplogroup, Shiba Inu dogs, Skin and gut microbiota, Staphylococcus",Experiment 52,Japan,Canis lupus familiaris,Brachialis muscle,UBERON:0001506,Atopic eczema,EFO:0000274,cADpre dogs,cADtreat dogs,Dogs that were already diagnosed with cAD (canine atopic dermatitis) before the study cohort recruitment and had been on oclacitinib treatment,10,10,NA,16S,12,Illumina,ANOVA,0.05,FALSE,NA,NA,NA,NA,unchanged,NA,NA,NA,NA,Signature 1,Fig. 1C,23 January 2025,KateRasheed,KateRasheed,Differentially abundant taxa between dogs using ANOVA,decreased,k__Bacteria|k__Bacillati|p__Bacillota|c__Bacilli|o__Bacillales|f__Staphylococcaceae|g__Staphylococcus,2|1783272|1239|91061|1385|90964|1279,Complete,Svetlana up -bsdb:1049/53/1,Study 1049,time series / longitudinal observational,37864204,10.1186/s40168-023-01671-2,NA,"Thomsen M, Künstner A, Wohlers I, Olbrich M, Lenfers T, Osumi T, Shimazaki Y, Nishifuji K, Ibrahim SM, Watson A, Busch H , Hirose M",A comprehensive analysis of gut and skin microbiota in canine atopic dermatitis in Shiba Inu dogs,Microbiome,2023,"16S rRNA, Canine atopic dermatitis, Fusobacterium, JAK inhibitor, Megamonas, Mitochondrial DNA, Mitochondrial haplogroup, Shiba Inu dogs, Skin and gut microbiota, Staphylococcus",Experiment 53,Japan,Canis lupus familiaris,Inguinal part of abdomen,UBERON:0008337,Atopic eczema,EFO:0000274,Healthy dogs,cADpre dogs,Dogs that were newly diagnosed with cAD (canine atopic dermatitis) without any previous medical treatments,20,10,NA,16S,12,Illumina,ANOVA,0.05,FALSE,NA,NA,NA,NA,unchanged,NA,NA,NA,NA,Signature 1,Fig. 1C,23 January 2025,KateRasheed,KateRasheed,Differentially abundant taxa between dogs using ANOVA,increased,k__Bacteria|k__Bacillati|p__Bacillota|c__Bacilli|o__Bacillales|f__Staphylococcaceae|g__Staphylococcus,2|1783272|1239|91061|1385|90964|1279,Complete,Svetlana up -bsdb:1049/54/1,Study 1049,time series / longitudinal observational,37864204,10.1186/s40168-023-01671-2,NA,"Thomsen M, Künstner A, Wohlers I, Olbrich M, Lenfers T, Osumi T, Shimazaki Y, Nishifuji K, Ibrahim SM, Watson A, Busch H , Hirose M",A comprehensive analysis of gut and skin microbiota in canine atopic dermatitis in Shiba Inu dogs,Microbiome,2023,"16S rRNA, Canine atopic dermatitis, Fusobacterium, JAK inhibitor, Megamonas, Mitochondrial DNA, Mitochondrial haplogroup, Shiba Inu dogs, Skin and gut microbiota, Staphylococcus",Experiment 54,Japan,Canis lupus familiaris,Carpal bone,UBERON:0001435,Atopic eczema,EFO:0000274,Healthy dogs,cADpre dogs,Dogs that were newly diagnosed with cAD (canine atopic dermatitis) without any previous medical treatments,20,10,NA,16S,12,Illumina,ANOVA,0.05,FALSE,NA,NA,NA,NA,unchanged,NA,NA,NA,NA,Signature 1,Fig. 1C,23 January 2025,KateRasheed,KateRasheed,Differentially abundant taxa between dogs using ANOVA,increased,k__Bacteria|k__Bacillati|p__Bacillota|c__Bacilli|o__Bacillales|f__Staphylococcaceae|g__Staphylococcus,2|1783272|1239|91061|1385|90964|1279,Complete,Svetlana up -bsdb:1049/55/1,Study 1049,time series / longitudinal observational,37864204,10.1186/s40168-023-01671-2,NA,"Thomsen M, Künstner A, Wohlers I, Olbrich M, Lenfers T, Osumi T, Shimazaki Y, Nishifuji K, Ibrahim SM, Watson A, Busch H , Hirose M",A comprehensive analysis of gut and skin microbiota in canine atopic dermatitis in Shiba Inu dogs,Microbiome,2023,"16S rRNA, Canine atopic dermatitis, Fusobacterium, JAK inhibitor, Megamonas, Mitochondrial DNA, Mitochondrial haplogroup, Shiba Inu dogs, Skin and gut microbiota, Staphylococcus",Experiment 55,Japan,Canis lupus familiaris,Carpal bone,UBERON:0001435,Atopic eczema,EFO:0000274,cADpre dogs,cADpost dogs,cADpre dogs that were consequently placed under oclacitinib treatment for two weeks after the diagnosis,10,10,NA,16S,12,Illumina,ANOVA,0.05,FALSE,NA,NA,NA,NA,unchanged,NA,NA,NA,NA,Signature 1,Fig. 1C,23 January 2025,KateRasheed,KateRasheed,Differentially abundant taxa between dogs using ANOVA,decreased,k__Bacteria|k__Bacillati|p__Bacillota|c__Bacilli|o__Bacillales|f__Staphylococcaceae|g__Staphylococcus,2|1783272|1239|91061|1385|90964|1279,Complete,Svetlana up -bsdb:1049/56/1,Study 1049,time series / longitudinal observational,37864204,10.1186/s40168-023-01671-2,NA,"Thomsen M, Künstner A, Wohlers I, Olbrich M, Lenfers T, Osumi T, Shimazaki Y, Nishifuji K, Ibrahim SM, Watson A, Busch H , Hirose M",A comprehensive analysis of gut and skin microbiota in canine atopic dermatitis in Shiba Inu dogs,Microbiome,2023,"16S rRNA, Canine atopic dermatitis, Fusobacterium, JAK inhibitor, Megamonas, Mitochondrial DNA, Mitochondrial haplogroup, Shiba Inu dogs, Skin and gut microbiota, Staphylococcus",Experiment 56,Japan,Canis lupus familiaris,Carpal bone,UBERON:0001435,Atopic eczema,EFO:0000274,cADpre dogs,cADtreat dogs,Dogs that were already diagnosed with cAD (canine atopic dermatitis) before the study cohort recruitment and had been on oclacitinib treatment,10,10,NA,16S,12,Illumina,ANOVA,0.05,FALSE,NA,NA,NA,NA,unchanged,NA,NA,NA,NA,Signature 1,Fig. 1C,23 January 2025,KateRasheed,KateRasheed,Differentially abundant taxa between dogs using ANOVA,decreased,k__Bacteria|k__Bacillati|p__Bacillota|c__Bacilli|o__Bacillales|f__Staphylococcaceae|g__Staphylococcus,2|1783272|1239|91061|1385|90964|1279,Complete,Svetlana up -bsdb:1049/57/1,Study 1049,time series / longitudinal observational,37864204,10.1186/s40168-023-01671-2,NA,"Thomsen M, Künstner A, Wohlers I, Olbrich M, Lenfers T, Osumi T, Shimazaki Y, Nishifuji K, Ibrahim SM, Watson A, Busch H , Hirose M",A comprehensive analysis of gut and skin microbiota in canine atopic dermatitis in Shiba Inu dogs,Microbiome,2023,"16S rRNA, Canine atopic dermatitis, Fusobacterium, JAK inhibitor, Megamonas, Mitochondrial DNA, Mitochondrial haplogroup, Shiba Inu dogs, Skin and gut microbiota, Staphylococcus",Experiment 57,Japan,Canis lupus familiaris,Mouth,UBERON:0000165,Atopic eczema,EFO:0000274,Healthy dogs,cADpre dogs,Dogs that were newly diagnosed with cAD (canine atopic dermatitis) without any previous medical treatments,20,10,NA,16S,12,Illumina,ANOVA,0.05,FALSE,NA,NA,NA,NA,decreased,NA,NA,NA,NA,Signature 1,Fig. 1C,23 January 2025,KateRasheed,KateRasheed,Differentially abundant taxa between dogs using ANOVA,increased,k__Bacteria|k__Bacillati|p__Bacillota|c__Bacilli|o__Bacillales|f__Staphylococcaceae|g__Staphylococcus,2|1783272|1239|91061|1385|90964|1279,Complete,Svetlana up -bsdb:1049/58/1,Study 1049,time series / longitudinal observational,37864204,10.1186/s40168-023-01671-2,NA,"Thomsen M, Künstner A, Wohlers I, Olbrich M, Lenfers T, Osumi T, Shimazaki Y, Nishifuji K, Ibrahim SM, Watson A, Busch H , Hirose M",A comprehensive analysis of gut and skin microbiota in canine atopic dermatitis in Shiba Inu dogs,Microbiome,2023,"16S rRNA, Canine atopic dermatitis, Fusobacterium, JAK inhibitor, Megamonas, Mitochondrial DNA, Mitochondrial haplogroup, Shiba Inu dogs, Skin and gut microbiota, Staphylococcus",Experiment 58,Japan,Canis lupus familiaris,Mouth,UBERON:0000165,Atopic eczema,EFO:0000274,cADpre dogs,cADpost dogs,cADpre dogs that were consequently placed under oclacitinib treatment for two weeks after the diagnosis,10,10,NA,16S,12,Illumina,ANOVA,0.05,FALSE,NA,NA,NA,NA,unchanged,NA,NA,NA,NA,Signature 1,Fig. 1C,23 January 2025,KateRasheed,KateRasheed,Differentially abundant taxa between dogs using ANOVA,decreased,k__Bacteria|k__Bacillati|p__Bacillota|c__Bacilli|o__Bacillales|f__Staphylococcaceae|g__Staphylococcus,2|1783272|1239|91061|1385|90964|1279,Complete,Svetlana up -bsdb:1049/59/1,Study 1049,time series / longitudinal observational,37864204,10.1186/s40168-023-01671-2,NA,"Thomsen M, Künstner A, Wohlers I, Olbrich M, Lenfers T, Osumi T, Shimazaki Y, Nishifuji K, Ibrahim SM, Watson A, Busch H , Hirose M",A comprehensive analysis of gut and skin microbiota in canine atopic dermatitis in Shiba Inu dogs,Microbiome,2023,"16S rRNA, Canine atopic dermatitis, Fusobacterium, JAK inhibitor, Megamonas, Mitochondrial DNA, Mitochondrial haplogroup, Shiba Inu dogs, Skin and gut microbiota, Staphylococcus",Experiment 59,Japan,Canis lupus familiaris,Feces,UBERON:0001988,Atopic eczema,EFO:0000274,Mitochondrial haplogroups A,Mitochondrial haplogroups C,"Mitochondrial haplogroups C refers to dogs belonging to this haplogroup, determined using the Canis mtDNA HV1 database",20,14,NA,16S,34,Illumina,Beta Binomial Regression,0.1,TRUE,NA,NA,NA,NA,unchanged,NA,NA,NA,NA,Signature 1,Supplementary Table 10,23 January 2025,KateRasheed,KateRasheed,Statistical summary of differentially abundant faecal bacterial taxa between mtDNA haplogroups A and C,decreased,"k__Bacteria|k__Bacillati|p__Actinomycetota,k__Bacteria|k__Pseudomonadati|p__Campylobacterota,k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Anaerostipes,k__Bacteria|k__Bacillati|p__Bacillota,k__Bacteria|k__Bacillati|p__Bacillota|c__Bacilli|o__Lactobacillales|f__Streptococcaceae|g__Streptococcus,k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Anaerotignaceae|g__Anaerotignum,k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Blautia,k__Bacteria|k__Bacillati|p__Bacillota|c__Erysipelotrichia|o__Erysipelotrichales|f__Erysipelotrichaceae|g__Amedibacterium",2|1783272|201174;2|3379134|29547;2|1783272|1239|186801|3085636|186803|207244;2|1783272|1239;2|1783272|1239|91061|186826|1300|1301;2|1783272|1239|186801|3085636|3118652|2039240;2|1783272|1239|186801|3085636|186803|572511;2|1783272|1239|526524|526525|128827|2749267,Complete,Svetlana up -bsdb:1049/60/1,Study 1049,time series / longitudinal observational,37864204,10.1186/s40168-023-01671-2,NA,"Thomsen M, Künstner A, Wohlers I, Olbrich M, Lenfers T, Osumi T, Shimazaki Y, Nishifuji K, Ibrahim SM, Watson A, Busch H , Hirose M",A comprehensive analysis of gut and skin microbiota in canine atopic dermatitis in Shiba Inu dogs,Microbiome,2023,"16S rRNA, Canine atopic dermatitis, Fusobacterium, JAK inhibitor, Megamonas, Mitochondrial DNA, Mitochondrial haplogroup, Shiba Inu dogs, Skin and gut microbiota, Staphylococcus",Experiment 60,Japan,Canis lupus familiaris,Axilla,UBERON:0009472,Atopic eczema,EFO:0000274,Mitochondrial haplogroups A,Mitochondrial haplogroups C,"Mitochondrial haplogroups C refers to dogs belonging to this haplogroup, determined using the Canis mtDNA HV1 database",20,14,NA,16S,12,Illumina,Beta Binomial Regression,0.1,TRUE,NA,NA,NA,NA,unchanged,NA,NA,NA,NA,Signature 1,Supplementary Table 10,23 January 2025,KateRasheed,KateRasheed,Statistical summary of differentially abundant skin bacterial taxa between mtDNA haplogroups A and C,decreased,"k__Bacteria|k__Bacillati|p__Actinomycetota,k__Bacteria|k__Bacillati|p__Actinomycetota|c__Actinomycetes|o__Micrococcales|f__Micrococcaceae|g__Arthrobacter,k__Bacteria|k__Pseudomonadati|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Bacteroidaceae|g__Bacteroides",2|1783272|201174;2|1783272|201174|1760|85006|1268|1663;2|3379134|976|200643|171549|815|816,Complete,Svetlana up -bsdb:1049/61/1,Study 1049,time series / longitudinal observational,37864204,10.1186/s40168-023-01671-2,NA,"Thomsen M, Künstner A, Wohlers I, Olbrich M, Lenfers T, Osumi T, Shimazaki Y, Nishifuji K, Ibrahim SM, Watson A, Busch H , Hirose M",A comprehensive analysis of gut and skin microbiota in canine atopic dermatitis in Shiba Inu dogs,Microbiome,2023,"16S rRNA, Canine atopic dermatitis, Fusobacterium, JAK inhibitor, Megamonas, Mitochondrial DNA, Mitochondrial haplogroup, Shiba Inu dogs, Skin and gut microbiota, Staphylococcus",Experiment 61,Japan,Canis lupus familiaris,Axilla,UBERON:0009472,Atopic eczema,EFO:0000274,Mitochondrial haplogroups A,Mitochondrial haplogroups C,"Mitochondrial haplogroups C refers to dogs belonging to this haplogroup, determined using the Canis mtDNA HV1 database",20,14,NA,16S,12,Illumina,ANCOM,0.1,TRUE,NA,NA,NA,NA,unchanged,NA,NA,NA,NA,Signature 1,Supplementary Table 10,23 January 2025,KateRasheed,KateRasheed,Statistical summary of differentially abundant skin bacterial taxa between mtDNA haplogroups A and C,increased,k__Bacteria|k__Pseudomonadati|p__Bacteroidota,2|3379134|976,Complete,Svetlana up -bsdb:1049/61/2,Study 1049,time series / longitudinal observational,37864204,10.1186/s40168-023-01671-2,NA,"Thomsen M, Künstner A, Wohlers I, Olbrich M, Lenfers T, Osumi T, Shimazaki Y, Nishifuji K, Ibrahim SM, Watson A, Busch H , Hirose M",A comprehensive analysis of gut and skin microbiota in canine atopic dermatitis in Shiba Inu dogs,Microbiome,2023,"16S rRNA, Canine atopic dermatitis, Fusobacterium, JAK inhibitor, Megamonas, Mitochondrial DNA, Mitochondrial haplogroup, Shiba Inu dogs, Skin and gut microbiota, Staphylococcus",Experiment 61,Japan,Canis lupus familiaris,Axilla,UBERON:0009472,Atopic eczema,EFO:0000274,Mitochondrial haplogroups A,Mitochondrial haplogroups C,"Mitochondrial haplogroups C refers to dogs belonging to this haplogroup, determined using the Canis mtDNA HV1 database",20,14,NA,16S,12,Illumina,ANCOM,0.1,TRUE,NA,NA,NA,NA,unchanged,NA,NA,NA,NA,Signature 2,Supplementary Table 10,23 January 2025,KateRasheed,KateRasheed,Statistical summary of differentially abundant skin bacterial taxa between mtDNA haplogroups A and C,decreased,"k__Bacteria|k__Pseudomonadati|p__Pseudomonadota|c__Alphaproteobacteria|o__Rhodobacterales|f__Roseobacteraceae|g__Rubellimicrobium,k__Bacteria|k__Pseudomonadati|p__Pseudomonadota|c__Gammaproteobacteria|o__Pasteurellales|f__Pasteurellaceae|g__Haemophilus",2|3379134|1224|28211|204455|2854170|295418;2|3379134|1224|1236|135625|712|724,Complete,Svetlana up -bsdb:1049/62/1,Study 1049,time series / longitudinal observational,37864204,10.1186/s40168-023-01671-2,NA,"Thomsen M, Künstner A, Wohlers I, Olbrich M, Lenfers T, Osumi T, Shimazaki Y, Nishifuji K, Ibrahim SM, Watson A, Busch H , Hirose M",A comprehensive analysis of gut and skin microbiota in canine atopic dermatitis in Shiba Inu dogs,Microbiome,2023,"16S rRNA, Canine atopic dermatitis, Fusobacterium, JAK inhibitor, Megamonas, Mitochondrial DNA, Mitochondrial haplogroup, Shiba Inu dogs, Skin and gut microbiota, Staphylococcus",Experiment 62,Japan,Canis lupus familiaris,Pinna,UBERON:0001757,Atopic eczema,EFO:0000274,Mitochondrial haplogroups A,Mitochondrial haplogroups C,"Mitochondrial haplogroups C refers to dogs belonging to this haplogroup, determined using the Canis mtDNA HV1 database",20,14,NA,16S,12,Illumina,Beta Binomial Regression,0.1,TRUE,NA,NA,NA,NA,unchanged,NA,NA,NA,NA,Signature 1,Supplementary Table 10,23 January 2025,KateRasheed,KateRasheed,Statistical summary of differentially abundant skin bacterial taxa between mtDNA haplogroups A and C,increased,"k__Bacteria|k__Bacillati|p__Actinomycetota|c__Actinomycetes|o__Micrococcales|f__Micrococcaceae|g__Rothia,k__Bacteria|k__Pseudomonadati|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Tannerellaceae|g__Tannerella,k__Bacteria|k__Pseudomonadati|p__Pseudomonadota|c__Gammaproteobacteria|o__Lysobacterales|f__Lysobacteraceae|g__Stenotrophomonas",2|1783272|201174|1760|85006|1268|32207;2|3379134|976|200643|171549|2005525|195950;2|3379134|1224|1236|135614|32033|40323,Complete,Svetlana up -bsdb:1049/62/2,Study 1049,time series / longitudinal observational,37864204,10.1186/s40168-023-01671-2,NA,"Thomsen M, Künstner A, Wohlers I, Olbrich M, Lenfers T, Osumi T, Shimazaki Y, Nishifuji K, Ibrahim SM, Watson A, Busch H , Hirose M",A comprehensive analysis of gut and skin microbiota in canine atopic dermatitis in Shiba Inu dogs,Microbiome,2023,"16S rRNA, Canine atopic dermatitis, Fusobacterium, JAK inhibitor, Megamonas, Mitochondrial DNA, Mitochondrial haplogroup, Shiba Inu dogs, Skin and gut microbiota, Staphylococcus",Experiment 62,Japan,Canis lupus familiaris,Pinna,UBERON:0001757,Atopic eczema,EFO:0000274,Mitochondrial haplogroups A,Mitochondrial haplogroups C,"Mitochondrial haplogroups C refers to dogs belonging to this haplogroup, determined using the Canis mtDNA HV1 database",20,14,NA,16S,12,Illumina,Beta Binomial Regression,0.1,TRUE,NA,NA,NA,NA,unchanged,NA,NA,NA,NA,Signature 2,Supplementary Table 10,23 January 2025,KateRasheed,KateRasheed,Statistical summary of differentially abundant skin bacterial taxa between mtDNA haplogroups A and C,decreased,"k__Bacteria|k__Bacillati|p__Actinomycetota,k__Bacteria|k__Pseudomonadati|p__Bacteroidota|c__Flavobacteriia|o__Flavobacteriales|f__Flavobacteriaceae|g__Flavobacterium,k__Bacteria|k__Pseudomonadati|p__Pseudomonadota|c__Gammaproteobacteria|o__Pasteurellales|f__Pasteurellaceae|g__Pasteurella",2|1783272|201174;2|3379134|976|117743|200644|49546|237;2|3379134|1224|1236|135625|712|745,Complete,Svetlana up -bsdb:1049/63/1,Study 1049,time series / longitudinal observational,37864204,10.1186/s40168-023-01671-2,NA,"Thomsen M, Künstner A, Wohlers I, Olbrich M, Lenfers T, Osumi T, Shimazaki Y, Nishifuji K, Ibrahim SM, Watson A, Busch H , Hirose M",A comprehensive analysis of gut and skin microbiota in canine atopic dermatitis in Shiba Inu dogs,Microbiome,2023,"16S rRNA, Canine atopic dermatitis, Fusobacterium, JAK inhibitor, Megamonas, Mitochondrial DNA, Mitochondrial haplogroup, Shiba Inu dogs, Skin and gut microbiota, Staphylococcus",Experiment 63,Japan,Canis lupus familiaris,Feces,UBERON:0001988,Atopic eczema,EFO:0000274,Mitochondrial haplogroups A,Mitochondrial haplogroups C,"Mitochondrial haplogroups C refers to dogs belonging to this haplogroup, determined using the Canis mtDNA HV1 database",20,14,NA,16S,34,Illumina,ANCOM,0.1,TRUE,NA,NA,NA,NA,unchanged,NA,NA,NA,NA,Signature 1,Supplementary Table 10,23 January 2025,KateRasheed,KateRasheed,Statistical summary of differentially abundant faecal bacterial taxa between mtDNA haplogroups A and C,decreased,k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Roseburia,2|1783272|1239|186801|3085636|186803|841,Complete,Svetlana up -bsdb:1049/64/1,Study 1049,time series / longitudinal observational,37864204,10.1186/s40168-023-01671-2,NA,"Thomsen M, Künstner A, Wohlers I, Olbrich M, Lenfers T, Osumi T, Shimazaki Y, Nishifuji K, Ibrahim SM, Watson A, Busch H , Hirose M",A comprehensive analysis of gut and skin microbiota in canine atopic dermatitis in Shiba Inu dogs,Microbiome,2023,"16S rRNA, Canine atopic dermatitis, Fusobacterium, JAK inhibitor, Megamonas, Mitochondrial DNA, Mitochondrial haplogroup, Shiba Inu dogs, Skin and gut microbiota, Staphylococcus",Experiment 64,Japan,Canis lupus familiaris,Forelimb,UBERON:0002102,Atopic eczema,EFO:0000274,Mitochondrial haplogroups A,Mitochondrial haplogroups C,"Mitochondrial haplogroups C refers to dogs belonging to this haplogroup, determined using the Canis mtDNA HV1 database",20,14,NA,16S,12,Illumina,Beta Binomial Regression,0.1,TRUE,NA,NA,NA,NA,unchanged,NA,NA,NA,NA,Signature 1,Supplementary Table 10,23 January 2025,KateRasheed,KateRasheed,Statistical summary of differentially abundant skin bacterial taxa between mtDNA haplogroups A and C,increased,k__Bacteria|k__Pseudomonadati|p__Pseudomonadota|c__Gammaproteobacteria|o__Pasteurellales|f__Pasteurellaceae|g__Haemophilus,2|3379134|1224|1236|135625|712|724,Complete,Svetlana up -bsdb:1049/64/2,Study 1049,time series / longitudinal observational,37864204,10.1186/s40168-023-01671-2,NA,"Thomsen M, Künstner A, Wohlers I, Olbrich M, Lenfers T, Osumi T, Shimazaki Y, Nishifuji K, Ibrahim SM, Watson A, Busch H , Hirose M",A comprehensive analysis of gut and skin microbiota in canine atopic dermatitis in Shiba Inu dogs,Microbiome,2023,"16S rRNA, Canine atopic dermatitis, Fusobacterium, JAK inhibitor, Megamonas, Mitochondrial DNA, Mitochondrial haplogroup, Shiba Inu dogs, Skin and gut microbiota, Staphylococcus",Experiment 64,Japan,Canis lupus familiaris,Forelimb,UBERON:0002102,Atopic eczema,EFO:0000274,Mitochondrial haplogroups A,Mitochondrial haplogroups C,"Mitochondrial haplogroups C refers to dogs belonging to this haplogroup, determined using the Canis mtDNA HV1 database",20,14,NA,16S,12,Illumina,Beta Binomial Regression,0.1,TRUE,NA,NA,NA,NA,unchanged,NA,NA,NA,NA,Signature 2,Supplementary Table 10,23 January 2025,KateRasheed,KateRasheed,Statistical summary of differentially abundant skin bacterial taxa between mtDNA haplogroups A and C,decreased,"k__Bacteria|k__Pseudomonadati|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Bacteroidaceae|g__Bacteroides,k__Bacteria|k__Pseudomonadati|p__Bacteroidota|c__Flavobacteriia|o__Flavobacteriales|f__Flavobacteriaceae|g__Capnocytophaga,k__Bacteria|k__Pseudomonadati|p__Pseudomonadota|c__Betaproteobacteria|o__Neisseriales|f__Neisseriaceae|g__Neisseria",2|3379134|976|200643|171549|815|816;2|3379134|976|117743|200644|49546|1016;2|3379134|1224|28216|206351|481|482,Complete,Svetlana up bsdb:1050/1/1,Study 1050,"cross-sectional observational, not case-control",30065718,10.3389/fmicb.2018.01603,NA,"Dong L, Yin J, Zhao J, Ma SR, Wang HR, Wang M, Chen W , Wei WQ",Microbial Similarity and Preference for Specific Sites in Healthy Oral Cavity and Esophagus,Frontiers in microbiology,2018,"16S rRNA gene sequencing, esophagus, microbial preference, microbial similarity, oral cavity",Experiment 1,China,Homo sapiens,"Oral cavity,Esophagus","UBERON:0000167,UBERON:0001043",Taxonomic microbiome measurement,EFO:0007883,Oral cavity,Esophagus,"Healthy individual who are esophageal disease-free, confirmed by endoscopic examination and then biopsy-based pathological diagnosis if necessary.",27,27,None,16S,34,Illumina,LEfSe,0.05,FALSE,2,NA,NA,NA,decreased,increased,decreased,NA,NA,Signature 1,"Figure 3, Supplementary Figure S1",2 May 2024,Scholastica,Scholastica,Microbial taxa significantly different in the oral cavity compared to the esophagus with LDA score >2 using LEfse analysis,increased,"k__Bacteria|p__Pseudomonadota|c__Alphaproteobacteria|o__Rhodospirillales|f__Acetobacteraceae,k__Bacteria|p__Pseudomonadota|c__Gammaproteobacteria|o__Moraxellales|f__Moraxellaceae|g__Acinetobacter,k__Bacteria|p__Pseudomonadota|c__Gammaproteobacteria|o__Pasteurellales|f__Pasteurellaceae|g__Actinobacillus,k__Bacteria|p__Bacillota|c__Erysipelotrichia|o__Erysipelotrichales|f__Erysipelotrichaceae|g__Allobaculum,k__Bacteria|p__Pseudomonadota|c__Alphaproteobacteria,k__Bacteria|p__Bacillota|c__Bacilli|o__Bacillales|f__Bacillaceae,k__Bacteria|p__Bacillota|c__Bacilli|o__Bacillales,k__Bacteria|p__Bacillota|c__Bacilli,k__Bacteria|p__Bacillota,k__Bacteria|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Blautia,k__Bacteria|p__Pseudomonadota|c__Alphaproteobacteria|o__Hyphomicrobiales|f__Nitrobacteraceae|g__Bradyrhizobium,k__Bacteria|p__Pseudomonadota|c__Alphaproteobacteria|o__Hyphomicrobiales|f__Brucellaceae,k__Bacteria|p__Pseudomonadota|c__Alphaproteobacteria|o__Caulobacterales|f__Caulobacteraceae,k__Bacteria|p__Pseudomonadota|c__Alphaproteobacteria|o__Caulobacterales,k__Bacteria|p__Bacteroidota|c__Chitinophagia|o__Chitinophagales|f__Chitinophagaceae,k__Bacteria|p__Bacteroidota|c__Flavobacteriia|o__Flavobacteriales|f__Weeksellaceae|g__Chryseobacterium,k__Bacteria|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Coprococcus,k__Bacteria|p__Pseudomonadota|c__Alphaproteobacteria|o__Hyphomicrobiales|g__Enhydrobacter,k__Bacteria|p__Pseudomonadota|c__Gammaproteobacteria|o__Enterobacterales,k__Bacteria|p__Pseudomonadota|c__Gammaproteobacteria|o__Enterobacterales|f__Enterobacteriaceae,k__Bacteria|p__Pseudomonadota|c__Gammaproteobacteria,k__Bacteria|p__Bacillota|c__Bacilli|o__Bacillales|f__Gemellaceae,k__Bacteria|p__Pseudomonadota|c__Alphaproteobacteria|o__Hyphomicrobiales,k__Bacteria|p__Actinomycetota|c__Actinomycetes|o__Micrococcales|f__Intrasporangiaceae,k__Bacteria|p__Bacillota|c__Bacilli|o__Lactobacillales,k__Bacteria|p__Pseudomonadota|c__Gammaproteobacteria|o__Lysobacterales|f__Lysobacteraceae,k__Bacteria|p__Pseudomonadota|c__Gammaproteobacteria|o__Lysobacterales,k__Bacteria|p__Pseudomonadota|c__Alphaproteobacteria|o__Hyphomicrobiales|f__Methylobacteriaceae,k__Bacteria|p__Pseudomonadota|c__Alphaproteobacteria|o__Hyphomicrobiales|f__Methylobacteriaceae|g__Methylobacterium,k__Bacteria|p__Pseudomonadota|c__Alphaproteobacteria|o__Hyphomicrobiales|f__Nitrobacteraceae,k__Bacteria|p__Pseudomonadota|c__Alphaproteobacteria|o__Sphingomonadales|f__Sphingomonadaceae|g__Novosphingobium,k__Bacteria|p__Pseudomonadota|c__Alphaproteobacteria|o__Hyphomicrobiales|f__Brucellaceae|g__Ochrobactrum,k__Bacteria|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Oscillospira,k__Bacteria|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae,k__Bacteria|p__Pseudomonadota|c__Betaproteobacteria|o__Burkholderiales|f__Oxalobacteraceae,k__Bacteria|p__Pseudomonadota|c__Gammaproteobacteria|o__Pasteurellales|f__Pasteurellaceae,k__Bacteria|p__Pseudomonadota|c__Gammaproteobacteria|o__Pasteurellales,k__Bacteria|p__Pseudomonadota|c__Alphaproteobacteria|o__Caulobacterales|f__Caulobacteraceae|g__Phenylobacterium,k__Bacteria|p__Actinomycetota|c__Actinomycetes|o__Propionibacteriales|f__Propionibacteriaceae|g__Propionibacterium,k__Bacteria|p__Pseudomonadota|c__Gammaproteobacteria|o__Pseudomonadales|f__Pseudomonadaceae,k__Bacteria|p__Pseudomonadota|c__Gammaproteobacteria|o__Pseudomonadales,k__Bacteria|p__Pseudomonadota|c__Gammaproteobacteria|o__Pseudomonadales|f__Pseudomonadaceae|g__Pseudomonas,k__Bacteria|p__Pseudomonadota|c__Betaproteobacteria|o__Burkholderiales|f__Burkholderiaceae|g__Ralstonia,k__Bacteria|p__Pseudomonadota|c__Alphaproteobacteria|o__Rhodospirillales|f__Rhodospirillaceae,k__Bacteria|p__Pseudomonadota|c__Alphaproteobacteria|o__Rhodospirillales,k__Bacteria|p__Bacteroidota|c__Saprospiria|o__Saprospirales|f__Saprospiraceae|g__Saprospira,k__Bacteria|p__Bacteroidota|c__Saprospiria|o__Saprospirales,k__Bacteria|p__Bacteroidota|c__Chitinophagia|o__Chitinophagales|f__Chitinophagaceae|g__Sediminibacterium,k__Bacteria|p__Pseudomonadota|c__Alphaproteobacteria|o__Sphingomonadales|f__Sphingomonadaceae|g__Sphingobium,k__Bacteria|p__Pseudomonadota|c__Alphaproteobacteria|o__Sphingomonadales|f__Sphingomonadaceae,k__Bacteria|p__Pseudomonadota|c__Alphaproteobacteria|o__Sphingomonadales,k__Bacteria|p__Pseudomonadota|c__Alphaproteobacteria|o__Sphingomonadales|f__Sphingomonadaceae|g__Sphingomonas,k__Bacteria|p__Bacillota|c__Bacilli|o__Bacillales|f__Staphylococcaceae,k__Bacteria|p__Bacillota|c__Bacilli|o__Bacillales|f__Staphylococcaceae|g__Staphylococcus,k__Bacteria|p__Pseudomonadota|c__Gammaproteobacteria|o__Lysobacterales|f__Lysobacteraceae|g__Stenotrophomonas,k__Bacteria|p__Bacillota|c__Bacilli|o__Lactobacillales|f__Streptococcaceae,k__Bacteria|p__Bacillota|c__Bacilli|o__Lactobacillales|f__Streptococcaceae|g__Streptococcus,k__Bacteria|p__Pseudomonadota|c__Alphaproteobacteria|o__Rhodospirillales|f__Acetobacteraceae,k__Bacteria|p__Pseudomonadota|c__Alphaproteobacteria|o__Hyphomicrobiales|f__Nitrobacteraceae,k__Bacteria|p__Pseudomonadota|c__Alphaproteobacteria|o__Caulobacterales|f__Caulobacteraceae,k__Bacteria|p__Pseudomonadota|c__Gammaproteobacteria|o__Enterobacterales|f__Enterobacteriaceae,k__Bacteria|p__Pseudomonadota|c__Alphaproteobacteria|o__Hyphomicrobiales|f__Methylobacteriaceae,k__Bacteria|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae,k__Bacteria|p__Pseudomonadota|c__Betaproteobacteria|o__Burkholderiales|f__Oxalobacteraceae,k__Bacteria|p__Pseudomonadota|c__Alphaproteobacteria|o__Rhodospirillales|f__Rhodospirillaceae,k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Muribaculaceae",2|1224|28211|204441|433;2|1224|1236|2887326|468|469;2|1224|1236|135625|712|713;2|1239|526524|526525|128827|174708;2|1224|28211;2|1239|91061|1385|186817;2|1239|91061|1385;2|1239|91061;2|1239;2|1239|186801|3085636|186803|572511;2|1224|28211|356|41294|374;2|1224|28211|356|118882;2|1224|28211|204458|76892;2|1224|28211|204458;2|976|1853228|1853229|563835;2|976|117743|200644|2762318|59732;2|1239|186801|3085636|186803|33042;2|1224|28211|356|212791;2|1224|1236|91347;2|1224|1236|91347|543;2|1224|1236;2|1239|91061|1385|539738;2|1224|28211|356;2|201174|1760|85006|85021;2|1239|91061|186826;2|1224|1236|135614|32033;2|1224|1236|135614;2|1224|28211|356|119045;2|1224|28211|356|119045|407;2|1224|28211|356|41294;2|1224|28211|204457|41297|165696;2|1224|28211|356|118882|528;2|1239|186801|186802|216572|119852;2|1239|186801|186802|216572;2|1224|28216|80840|75682;2|1224|1236|135625|712;2|1224|1236|135625;2|1224|28211|204458|76892|20;2|201174|1760|85009|31957|1743;2|1224|1236|72274|135621;2|1224|1236|72274;2|1224|1236|72274|135621|286;2|1224|28216|80840|119060|48736;2|1224|28211|204441|41295;2|1224|28211|204441;2|976|1937959|1936988|89374|1007;2|976|1937959|1936988;2|976|1853228|1853229|563835|504481;2|1224|28211|204457|41297|165695;2|1224|28211|204457|41297;2|1224|28211|204457;2|1224|28211|204457|41297|13687;2|1239|91061|1385|90964;2|1239|91061|1385|90964|1279;2|1224|1236|135614|32033|40323;2|1239|91061|186826|1300;2|1239|91061|186826|1300|1301;2|1224|28211|204441|433;2|1224|28211|356|41294;2|1224|28211|204458|76892;2|1224|1236|91347|543;2|1224|28211|356|119045;2|1239|186801|186802|216572;2|1224|28216|80840|75682;2|1224|28211|204441|41295;2|976|200643|171549|2005473,Complete,Svetlana up bsdb:1050/1/2,Study 1050,"cross-sectional observational, not case-control",30065718,10.3389/fmicb.2018.01603,NA,"Dong L, Yin J, Zhao J, Ma SR, Wang HR, Wang M, Chen W , Wei WQ",Microbial Similarity and Preference for Specific Sites in Healthy Oral Cavity and Esophagus,Frontiers in microbiology,2018,"16S rRNA gene sequencing, esophagus, microbial preference, microbial similarity, oral cavity",Experiment 1,China,Homo sapiens,"Oral cavity,Esophagus","UBERON:0000167,UBERON:0001043",Taxonomic microbiome measurement,EFO:0007883,Oral cavity,Esophagus,"Healthy individual who are esophageal disease-free, confirmed by endoscopic examination and then biopsy-based pathological diagnosis if necessary.",27,27,None,16S,34,Illumina,LEfSe,0.05,FALSE,2,NA,NA,NA,decreased,increased,decreased,NA,NA,Signature 2,"Figure 3, Supplementary Figure S1",2 May 2024,Scholastica,Scholastica,Microbial taxa significantly different in the oral cavity compared to the esophagus with LDA score >2 using LEfse analysis,decreased,"k__Bacteria|p__Actinomycetota|c__Actinomycetes|o__Actinomycetales|f__Actinomycetaceae|g__Actinomyces,k__Bacteria|p__Actinomycetota|c__Actinomycetes|o__Actinomycetales|f__Actinomycetaceae,k__Bacteria|p__Actinomycetota|c__Actinomycetes|o__Actinomycetales,k__Bacteria|p__Actinomycetota,k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales,k__Bacteria|p__Bacteroidota|c__Bacteroidia,k__Bacteria|p__Bacteroidota,k__Bacteria|p__Pseudomonadota|c__Betaproteobacteria,k__Bacteria|p__Pseudomonadota|c__Gammaproteobacteria|o__Cardiobacteriales|f__Cardiobacteriaceae,k__Bacteria|p__Pseudomonadota|c__Gammaproteobacteria|o__Cardiobacteriales,k__Bacteria|p__Pseudomonadota|c__Gammaproteobacteria|o__Cardiobacteriales|f__Cardiobacteriaceae|g__Cardiobacterium,k__Bacteria|p__Pseudomonadota|c__Betaproteobacteria|o__Neisseriales|f__Neisseriaceae|g__Neisseria,k__Bacteria|p__Pseudomonadota|c__Betaproteobacteria|o__Neisseriales|f__Neisseriaceae,k__Bacteria|p__Pseudomonadota|c__Betaproteobacteria|o__Neisseriales,k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Paludibacteraceae|g__Paludibacter,k__Bacteria|p__Bacillota|c__Negativicutes|o__Selenomonadales|f__Selenomonadaceae|g__Selenomonas,k__Bacteria|p__Candidatus Saccharibacteria",2|201174|1760|2037|2049|1654;2|201174|1760|2037|2049;2|201174|1760|2037;2|201174;2|976|200643|171549;2|976|200643;2|976;2|1224|28216;2|1224|1236|135615|868;2|1224|1236|135615;2|1224|1236|135615|868|2717;2|1224|28216|206351|481|482;2|1224|28216|206351|481;2|1224|28216|206351;2|976|200643|171549|2005523|346096;2|1239|909932|909929|1843491|970;2|95818,Complete,Svetlana up bsdb:1050/2/1,Study 1050,"cross-sectional observational, not case-control",30065718,10.3389/fmicb.2018.01603,NA,"Dong L, Yin J, Zhao J, Ma SR, Wang HR, Wang M, Chen W , Wei WQ",Microbial Similarity and Preference for Specific Sites in Healthy Oral Cavity and Esophagus,Frontiers in microbiology,2018,"16S rRNA gene sequencing, esophagus, microbial preference, microbial similarity, oral cavity",Experiment 2,China,Homo sapiens,Oral cavity,UBERON:0000167,Taxonomic microbiome measurement,EFO:0007883,Saliva and tongue dorsum,Supragingival plaque,Supragingival plaque samples of healthy individual confirmed free of periodontal diseases and no incident caries at the time of sampling by a dentist.,27,27,None,16S,34,Illumina,LEfSe,0.05,FALSE,2,NA,NA,NA,increased,unchanged,increased,NA,NA,Signature 1,Figure 5,4 May 2024,Scholastica,Scholastica,Significantly higher relative abundance in the supragingival plaques compared to other two sites,increased,"k__Bacteria|p__Bacteroidota,k__Bacteria|p__Campylobacterota|c__Epsilonproteobacteria,k__Bacteria|p__Bacteroidota|c__Flavobacteriia,k__Bacteria|p__Fusobacteriota,k__Bacteria|p__Fusobacteriota|c__Fusobacteriia,k__Bacteria|p__Spirochaetota|c__Spirochaetia,k__Bacteria|p__Spirochaetota",2|976;2|29547|3031852;2|976|117743;2|32066;2|32066|203490;2|203691|203692;2|203691,Complete,Svetlana up