.travis.yml

language: r
sudo: required
dist: trusty
cache:
  - directories:
    - $HOME/R/Library

matrix:
  include:
    - r: bioc-release
    - r: bioc-devel
    - r: 3.5.0
    - r: 3.4.4
    - r: 3.4.2

addons:
  apt:
    packages:
      - libxml2-dev
      - tk-dev

before_install:
  - tlmgr install index marginfix bera nowidow parnotes

install:
  - R --version
  - which R
  - R -e "source('https://bioconductor.org/biocLite.R'); biocLite('BiocInstaller')"
  - R -e "BiocInstaller::biocLite(c('BiocCheck', 'covr', 'devtools', 'roxygen2'), Ncpu=4)"
  - R -e "message(BiocInstaller::isDevel())"
  - R -e 'devtools::install_deps(dependencies=TRUE, threads=4)'
  - R -e 'BiocParallel::multicoreWorkers()'
  - R -e 'devtools::install(".", upgrade_dependencies=TRUE, dependencies=TRUE, threads=4)'

script:
  - travis_wait 60 R CMD build .
  - R CMD BiocCheck --no-check-vignettes *tar.gz
  - R CMD check --no-vignettes --timings *tar.gz
#  - R -e 'devtools::run_examples()'
#  - cd vignettes && if [[ $TRAVIS_R_VERSION_STRING != "3.4.0" ]]; then
#        travis_wait 60 R CMD Sweave --engine=knitr::knitr --pdf "OUTRIDER.Rnw";
#    else 
#        travis_wait 60 R CMD Sweave --engine=knitr::knitr --pdf "OUTRIDER.Rnw" 2>&1 | tee /dev/tty | grep Error | exit `wc -l`;
#    fi
  
after_success:
  - Rscript -e 'covr::codecov()'