publish_N5_plugin.yml

name: Release to Update Site

# https://imagej.net/update-sites/automatic-uploads
# https://github.com/saalfeldlab/n5-ij/tree/master/.github
# https://imagej.net/update-sites/setup#creating-a-hosted-update-site

on:
  workflow_dispatch:
    inputs:
      module:
        description: Module to deploy as an ImageJ plugin
        required: true
        default: 'view-simulation-results'

      username:
        description: Username of IJ user deploying
        required: true
        default: 'vcell'

      password:
        description: Password for the user deploying
        required: true

      update_site:
        description: The endpoint which hosts the available plugin
        required: true
        default: 'VCell-Simulations-Result-Viewer'


jobs:
  build_release:
    runs-on: ubuntu-latest
    env:
      IJ_DOWNLOAD_URL: https://downloads.imagej.net/fiji/latest/fiji-linux64.zip
      WIKI_USER: ${{ github.event.inputs.username }}
      UPDATE_PASS: ${{ secrets.VCELL_UPLOAD_PASSWORD }}
      UPDATE_SITE: ${{ github.event.inputs.update_site }}
    steps:
      - name: Checkout
        uses: actions/checkout@v3

      - name: Set up JDK 8
        uses: actions/setup-java@v3
        with:
          java-version: '8'
          distribution: 'temurin'
          cache: maven
      
      - name: Build with Maven
        run: 'mvn -B -pl org.vcell.vcellfiji:${{ github.event.inputs.module }} -DskipTests=True package' # Skip tests, cause for concern see if there is way to do some form of composition with workflows
      - name: Install ImageJ/Fiji
        run: |
          curl --silent -O ${IJ_DOWNLOAD_URL}
          unzip fiji-linux64.zip
          ./Fiji.app/ImageJ-linux64 --headless --update edit-update-site ${UPDATE_SITE} https://sites.imagej.net/${UPDATE_SITE}/ "webdav:${WIKI_USER}:${UPDATE_PASS}" .

      - name: Install in ImageJ/Fiji (with Maven)
        run: mvn -B -pl org.vcell.vcellfiji:${{ github.event.inputs.module }} install -Dscijava.app.directory=./Fiji.app -Ddelete.other.versions=true -Dscijava.ignoreDependencies=true -DskipTests=True #Skip tests

      - name: Release to ImageJ update site
        run: |
          ./Fiji.app/ImageJ-linux64 --headless --update upload-complete-site --force ${UPDATE_SITE}