From 3cb79c1493da449689c775c4bb373a178cf540d5 Mon Sep 17 00:00:00 2001 From: Peter Edge Date: Mon, 22 Apr 2019 13:00:08 -0700 Subject: [PATCH] fixed build issue caused by missing include in Makefile --- Makefile | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/Makefile b/Makefile index d264c60..7be6248 100644 --- a/Makefile +++ b/Makefile @@ -47,7 +47,7 @@ $(B)/hapfragments.o: $(H)/hapfragments.c $(H)/hapfragments.h $(H)/readvariant.h $(CC) -c $(H)/hapfragments.c -o $(B)/hapfragments.o $(B)/readvariant.o: $(H)/readvariant.c $(H)/readvariant.h $(H)/hashtable.h $(H)/hashtable.c | $(B) - $(CC) -c $(H)/readvariant.c -o $(B)/readvariant.o + $(CC) -c -I$(HTSLIB) $(H)/readvariant.c -o $(B)/readvariant.o $(B)/bamread.o: $(H)/bamread.h $(H)/bamread.c $(H)/readfasta.h $(H)/readfasta.c $(SAMTOOLS)/libbam.a $(HTSLIB)/libhts.a | $(B) $(CC) -I$(SAMTOOLS) -I$(HTSLIB) -c $(H)/bamread.c -o $(B)/bamread.o