Skip to content

Latest commit

 

History

History
39 lines (31 loc) · 1.36 KB

README.md

File metadata and controls

39 lines (31 loc) · 1.36 KB

Summer 2014 Source Code

Contents

This is the git repo that contains all code written during the summer of 2014 for the P20 internship.

Creating VCF Files

Processing VCF Files

Graphing

  • graph/: this directory contains R scripts written for specific data, they aren't meant to be general

Et Cetera

  • install.py: installs the Python modules needed for the programs in this repo

Installation

Most of the Python programs depend on external libraries and modules. Each dependency is listed in the README for that particular program. However, if you plan on using all the programs at some point in time, you can run install.py and it will install all the Python modules that chromoprocessor, vcfparse, and tovcf need for the user.

Note: install.py also installs pip

For additional information see each program's respective README