From f382bae5034a2ee0d341a1c7a5e2fdefbae628c0 Mon Sep 17 00:00:00 2001
From: Bjoern Gruening <bjoern.gruening@gmail.com>
Date: Mon, 27 Jan 2025 21:26:21 +0100
Subject: [PATCH 1/3] updates for 24.2

---
 files/galaxy/config/datatypes_conf.xml        | 40 ++++++++--
 .../config/user_preferences_extra_conf.yml    | 20 ++++-
 group_vars/gxconfig.yml                       | 76 ++++++++++++++-----
 templates/galaxy/config/oidc_config.xml       |  2 +-
 templates/galaxy/config/tool_conf.xml.j2      |  1 +
 5 files changed, 111 insertions(+), 28 deletions(-)

diff --git a/files/galaxy/config/datatypes_conf.xml b/files/galaxy/config/datatypes_conf.xml
index 14266f14e..51cf0998f 100644
--- a/files/galaxy/config/datatypes_conf.xml
+++ b/files/galaxy/config/datatypes_conf.xml
@@ -116,7 +116,11 @@
     <datatype extension="customtrack" type="galaxy.datatypes.interval:CustomTrack"/>
     <datatype extension="bowtie_color_index" type="galaxy.datatypes.ngsindex:BowtieColorIndex" mimetype="text/html" display_in_upload="false"/>
     <datatype extension="bowtie_base_index" type="galaxy.datatypes.ngsindex:BowtieBaseIndex" mimetype="text/html" display_in_upload="false"/>
-    <datatype extension="csfasta" type="galaxy.datatypes.sequence:csFasta" display_in_upload="true"/>
+    <datatype extension="csfasta" type="galaxy.datatypes.sequence:csFasta" display_in_upload="true">
+        <upload_warning>
+          SOLID Color-Space sequence data is a rare data type. Consider selecting fasta instead.
+        </upload_warning>
+    </datatype>
     <datatype extension="data" type="galaxy.datatypes.data:Data" mimetype="application/octet-stream" max_optional_metadata_filesize="1048576"/>
     <datatype extension="gz" type="galaxy.datatypes.binary:Binary" subclass="true"/>
     <datatype extension="binary" type="galaxy.datatypes.binary:Binary" mimetype="application/octet-stream" max_optional_metadata_filesize="1048576"/>
@@ -150,6 +154,9 @@
     </datatype>
     <datatype extension="fastqsolexa" auto_compressed_types="gz,bz2" type="galaxy.datatypes.sequence:FastqSolexa" display_in_upload="true" description="Solexa variant of the FASTQ format: solexa+64" description_url="https://wiki.galaxyproject.org/Learn/Datatypes#FastqSolexa">
       <converter file="fastq_to_fqtoc.xml" target_datatype="fqtoc"/>
+      <upload_warning>
+        Sequencing data produced since February 2011 is generally using Sanger encoding. Please consider selecting fastqsanger${auto_compressed_type} instead.
+      </upload_warning>
     </datatype>
     <datatype extension="fastqcssanger" auto_compressed_types="gz,bz2" type="galaxy.datatypes.sequence:FastqCSSanger" display_in_upload="true" description="sequence in in color space phred scored quality values 0:93 represented by ASCII 33:126">
       <upload_warning>
@@ -159,6 +166,9 @@
     </datatype>
     <datatype extension="fastqillumina" auto_compressed_types="gz,bz2" type="galaxy.datatypes.sequence:FastqIllumina" display_in_upload="true" description="Sanger variant of the FASTQ format: phred+64">
       <converter file="fastq_to_fqtoc.xml" target_datatype="fqtoc"/>
+      <upload_warning>
+        Sequencing data produced since February 2011 is generally using Sanger encoding. Please consider selecting fastqsanger${auto_compressed_type} instead.
+      </upload_warning>
     </datatype>
     <datatype extension="fqtoc" type="galaxy.datatypes.sequence:SequenceSplitLocations" display_in_upload="true"/>
     <datatype extension="eland" type="galaxy.datatypes.tabular:Eland" display_in_upload="true"/>
@@ -184,7 +194,7 @@
     <datatype extension="gif" type="galaxy.datatypes.images:Gif" mimetype="image/gif"/>
     <datatype extension="gmaj.zip" type="galaxy.datatypes.images:Gmaj" mimetype="application/zip"/>
     <datatype extension="graph_dot" type="galaxy.datatypes.data:Text" subclass="true"/>
-    <datatype extension="gtf" type="galaxy.datatypes.interval:Gtf" display_in_upload="true">
+    <datatype extension="gtf" auto_compressed_types="gz" type="galaxy.datatypes.interval:Gtf" display_in_upload="true">
       <converter file="gff_to_interval_index_converter.xml" target_datatype="interval_index"/>
       <converter file="bed_gff_or_vcf_to_bigwig_converter.xml" target_datatype="bigwig"/>
       <display file="igb/gtf.xml"/>
@@ -198,6 +208,7 @@
     <datatype extension="grib" type="galaxy.datatypes.binary:Grib" mimetype="application/octet-stream" display_in_upload="true"/>
     <datatype extension="loom" type="galaxy.datatypes.binary:Loom" description="An HDF5-based Loom File" mimetype="application/octet-stream" display_in_upload="true"/>
     <datatype extension="h5ad" type="galaxy.datatypes.binary:Anndata" description="An HDF5-based anndata File" mimetype="application/octet-stream" display_in_upload="true"/>
+    <datatype extension="h5mu" type="galaxy.datatypes.binary:H5" mimetype="application/octet-stream" display_in_upload="true" subclass="true" description="MuData is a format analogous to Anndata for multimodal datasets and is based on HDF5" description_url="https://github.com/scverse/mudata"/>
     <datatype extension="visium.tar.gz" type="galaxy.datatypes.binary:Visium" subclass="true" display_in_upload="true" description="Visium is a tar.gz archive with at least a 'Spatial' subfolder, a filtered h5 file and a raw h5 file." />
     <datatype extension="mz5" type="galaxy.datatypes.binary:H5" subclass="true" mimetype="application/octet-stream" display_in_upload="true"/>
     <datatype extension="hyphy_results.json" type="galaxy.datatypes.text:Json" mimetype="application/json" subclass="true" display_in_upload="false"/>
@@ -286,15 +297,25 @@
       <display file="qiime/qiime2/q2view.xml"/>
     </datatype>
     <datatype extension='qiime2.tabular' type="galaxy.datatypes.qiime2:QIIME2Metadata" display_in_upload="true"/>
-    <datatype extension="zip" type="galaxy.datatypes.binary:CompressedZipArchive" display_in_upload="true"/>
+    <datatype extension="zip" type="galaxy.datatypes.binary:CompressedZipArchive" display_in_upload="true">
+        <converter file="archive_to_directory.xml" target_datatype="directory" />
+    </datatype>
     <datatype extension="ncbi_genome_dataset.zip" type="galaxy.datatypes.binary:CompressedZipArchive" subclass="true" display_in_upload="true"/>
-    <datatype extension="tar" type="galaxy.datatypes.binary:CompressedArchive" subclass="true" display_in_upload="true">
-      <converter file="tar_to_directory.xml" target_datatype="directory"/>
+    <datatype extension="zarr.zip" type="galaxy.datatypes.binary:CompressedZarrZipArchive" display_in_upload="true">
+        <converter file="archive_to_directory.xml" target_datatype="zarr" />
+    </datatype>
+    <datatype extension="ome_zarr.zip" type="galaxy.datatypes.binary:CompressedOMEZarrZipArchive" display_in_upload="true">
+        <converter file="archive_to_directory.xml" target_datatype="ome_zarr" />
     </datatype>
     <datatype extension="mat" type="galaxy.datatypes.binary:Binary" subclass="True" display_in_upload="true"/>
     <datatype extension="no_unzip.zip" type="galaxy.datatypes.binary:CompressedArchive" subclass="true" display_in_upload="true"/>
-    <datatype extension="directory" type="galaxy.datatypes.data:Directory">
     </datatype>
+    <datatype extension="tar" auto_compressed_types="gz,bz2" type="galaxy.datatypes.binary:CompressedArchive" subclass="true" display_in_upload="true">
+      <converter file="archive_to_directory.xml" target_datatype="directory"/>
+    </datatype>
+    <datatype extension="directory" type="galaxy.datatypes.data:Directory"/>
+    <datatype extension="zarr" type="galaxy.datatypes.data:ZarrDirectory" />
+    <datatype extension="ome_zarr" type="galaxy.datatypes.images:OMEZarr" />
     <datatype extension="yaml" type="galaxy.datatypes.text:Yaml" display_in_upload="true" />
     <!-- Proteomics Datatypes -->
     <datatype extension="mrm" type="galaxy.datatypes.tabular:Tabular" display_in_upload="true" subclass="true"/>
@@ -379,6 +400,7 @@
     <datatype extension="fast5.tar.gz" type="galaxy.datatypes.binary:Fast5ArchiveGz" display_in_upload="true"/>
     <datatype extension="fast5.tar.bz2" type="galaxy.datatypes.binary:Fast5ArchiveBz2" display_in_upload="true"/>
     <datatype extension="fast5.tar.xz" type="galaxy.datatypes.binary:Fast5ArchiveXz" display_in_upload="true"/>
+    <datatype extension="pod5" type="galaxy.datatypes.binary:Pod5" display_in_upload="true"/>
     <datatype extension="peptideshaker_archive" type="galaxy.datatypes.binary:CompressedArchive" subclass="true" display_in_upload="true"/>
     <datatype extension="percin" type="galaxy.datatypes.tabular:Tabular" subclass="true"/>
     <datatype extension="percout" type="galaxy.datatypes.xml:GenericXml" subclass="true"/>
@@ -983,6 +1005,7 @@
     <datatype extension="gmsh.msh" type="galaxy.datatypes.constructive_solid_geometry:GmshMsh" display_in_upload="true"/>
     <datatype extension="gmsh.geo" type="galaxy.datatypes.constructive_solid_geometry:GmshGeo" display_in_upload="true"/>
     <datatype extension="zset.geof" type="galaxy.datatypes.constructive_solid_geometry:ZsetGeof" display_in_upload="true"/>
+    <datatype extension="vtkxml" type="galaxy.datatypes.constructive_solid_geometry:VtkXml" display_in_upload="true"/>
     <datatype extension="stl" type="galaxy.datatypes.binary:Binary" mimetype="application/octet-stream" display_in_upload="true" description="STL is a file format native to the stereolithography CAD software created by 3D Systems."/>
     <!-- Povray script -->
     <datatype extension="pov" type="galaxy.datatypes.text:Text" subclass="true" display_in_upload="true"/>
@@ -1015,6 +1038,7 @@
     <datatype extension="fits" type="galaxy.datatypes.binary:FITS" mimetype="application/octet-stream" display_in_upload="true" description="Flexible Image Transport System (FITS) used in Astronomy"/>
     <datatype extension="chain" type="galaxy.datatypes.chain:Chain" display_in_upload="true" description_url="https://genome.ucsc.edu/goldenPath/help/chain.html"/>
     <datatype extension="ucsc.net" type="galaxy.datatypes.chain:Net" display_in_upload="true" description_url="https://genome.ucsc.edu/goldenPath/help/net.html"/>
+    <datatype extension="bcsp" type="galaxy.datatypes.binary:Binary" mimetype="application/octet-stream" display_in_upload="true" subclass="true" description="Binary format of k-mer hash table which is only compatible with Fairy"/>
   </registration>
   <sniffers>
     <!--
@@ -1041,6 +1065,7 @@
     <sniffer type="galaxy.datatypes.mothur:Axes"/>
     <sniffer type="galaxy.datatypes.constructive_solid_geometry:PlyAscii"/>
     <sniffer type="galaxy.datatypes.constructive_solid_geometry:PlyBinary"/>
+    <sniffer type="galaxy.datatypes.constructive_solid_geometry:VtkXml"/>
     <sniffer type="galaxy.datatypes.constructive_solid_geometry:VtkAscii"/>
     <sniffer type="galaxy.datatypes.constructive_solid_geometry:VtkBinary"/>
     <sniffer type="galaxy.datatypes.constructive_solid_geometry:NeperTess"/>
@@ -1098,6 +1123,7 @@
     <sniffer type="galaxy.datatypes.binary:Fast5ArchiveXz"/>
     <sniffer type="galaxy.datatypes.binary:Fast5ArchiveBz2"/>
     <sniffer type="galaxy.datatypes.binary:Fast5Archive"/>
+    <sniffer type="galaxy.datatypes.binary:Pod5"/>
     <sniffer type="galaxy.datatypes.binary:Meryldb" />
     <sniffer type="galaxy.datatypes.binary:Bref3" />
     <sniffer type="galaxy.datatypes.binary:PostgresqlArchive"/>
@@ -1114,6 +1140,8 @@
     <sniffer type="galaxy.datatypes.qiime2:QIIME2Metadata"/>
     <sniffer type="galaxy.datatypes.qiime2:QIIME2Artifact"/>
     <sniffer type="galaxy.datatypes.qiime2:QIIME2Visualization"/>
+    <sniffer type="galaxy.datatypes.binary:CompressedOMEZarrZipArchive"/>
+    <sniffer type="galaxy.datatypes.binary:CompressedZarrZipArchive"/>
     <sniffer type="galaxy.datatypes.binary:CompressedZipArchive"/>
     <sniffer type="galaxy.datatypes.binary:Pretext"/>
     <sniffer type="galaxy.datatypes.annotation:Augustus"/>
diff --git a/files/galaxy/config/user_preferences_extra_conf.yml b/files/galaxy/config/user_preferences_extra_conf.yml
index 2a46a135c..da97548bf 100644
--- a/files/galaxy/config/user_preferences_extra_conf.yml
+++ b/files/galaxy/config/user_preferences_extra_conf.yml
@@ -64,6 +64,19 @@ preferences:
               # store: vault
               required: False
 
+    invenio:
+        description: Your Invenio RDM Integration Settings
+        inputs:
+            - name: token
+              label: Personal Token used to create draft records and to upload files
+              type: secret
+              store: vault # Requires setting up vault_config_file in your galaxy.yml
+              required: False
+            - name: public_name
+              label: Creator name to associate with new records (formatted as "Last name, First name"). If left blank "Anonymous Galaxy User" will be used. You can always change this by editing your record directly.
+              type: text
+              required: False
+
     zenodo:
         description: Your Zenodo Integration Settings
         inputs:
@@ -95,13 +108,18 @@ preferences:
         description: Your Onedata account
         inputs:
             - name: onezone_domain
-              label: Domain of the Onezone service (e.g. "demo.onedata.org")
+              label: Domain of the Onezone service (e.g. datahub.egi.eu). The minimal supported Onezone version is 21.02.4.
               type: text
               required: False
             - name: access_token
               label: Your access token, suitable for REST API access in a Oneprovider service
               type: password
               required: False
+            - name: disable_tls_certificate_validation
+              label: Allow connection to Onedata servers that do not present trusted SSL certificates. SHOULD NOT be used unless you really know what you are doing.
+              type: boolean
+              required: False
+              value: False
 
     distributed_arc_compute:
         description: The URL to your ARC remote HPC compute resource.
diff --git a/group_vars/gxconfig.yml b/group_vars/gxconfig.yml
index 490df8e17..a93cf1fa1 100644
--- a/group_vars/gxconfig.yml
+++ b/group_vars/gxconfig.yml
@@ -234,7 +234,7 @@ base_app_main: &BASE_APP_MAIN
 
   # conda channels to enable by default
   # (https://conda.io/docs/user-guide/tasks/manage-channels.html)
-  conda_ensure_channels: "conda-forge,bioconda"
+  #conda_ensure_channels: conda-forge,bioconda
 
   # Use locally-built conda packages.
   #conda_use_local: false
@@ -245,8 +245,9 @@ base_app_main: &BASE_APP_MAIN
 
   # Set to true to instruct Galaxy to install Conda from the web
   # automatically if it cannot find a local copy and conda_exec is not
-  # configured.
-  #conda_auto_init: true
+  # configured. The default is true if running Galaxy from source, and
+  # false if running from installed packages.
+  #conda_auto_init: false
 
   # You must set this to true if conda_prefix and job_working_directory
   # are not on the same volume, or some conda dependencies will fail to
@@ -377,15 +378,6 @@ base_app_main: &BASE_APP_MAIN
   # Configured user file source templates embedded into Galaxy's config.
   #file_source_templates: null
 
-  # Configure URIs for user object stores to use either the object ID
-  # ('id') or UUIDs ('uuid'). Either is fine really, Galaxy doesn't
-  # typically expose database objects by 'id' but there isn't any
-  # obvious disadvantage to doing it in this case and it keeps user
-  # exposed URIs much smaller. The default of UUID feels a little more
-  # like a typical way to do this within Galaxy though. Do not change
-  # this value once user object stores have been created.
-  #user_config_templates_index_by: uuid
-
   # User defined object stores and file sources are saved in the
   # database with their last valid configuration. It may be the case
   # that the admin changes file source and object store templates over
@@ -769,8 +761,8 @@ base_app_main: &BASE_APP_MAIN
   # <cache_dir>.
   object_store_cache_path: '/data/jwd02f/s3_object_store_cache'
 
-  # Default cache size for caching object stores if cache not configured
-  # for that object store entry.
+  # Default cache size, in GB, for caching object stores if the cache is
+  # not configured for that object store entry.
   object_store_cache_size: 10000
 
   # Set this to true to indicate in the UI that a user's object store
@@ -1013,11 +1005,24 @@ base_app_main: &BASE_APP_MAIN
   # subdomain. Defaults to "/".
   #interactivetools_base_path: /
 
-  # Map for interactivetool proxy.
+  # Map for the interactivetool proxy. Mappings are stored in a SQLite
+  # database file located on this path. As an alternative, you may also
+  # store them in any other RDBMS supported by SQLAlchemy using the
+  # option ``interactivetoolsproxy_map``, which overrides this one.
   # The value of this option will be resolved with respect to
   # <data_dir>.
   interactivetools_map: "{{ galaxy_mutable_data_dir }}/interactivetools_map.sqlite"
 
+  # Use a database supported by SQLAlchemy as map for the
+  # interactivetool proxy. When this option is set, the value of
+  # ``interactivetools_map`` is ignored. The value of this option must
+  # be a `SQLAlchemy database URL
+  # <https://docs.sqlalchemy.org/en/20/core/engines.html#database-urls>`_.
+  # Mappings are written to the table "gxitproxy" within the database.
+  # This value cannot match ``database_connection`` nor
+  # ``install_database_connection``.
+  #interactivetoolsproxy_map: null
+
   # Prefix to use in the formation of the subdomain or path for
   # interactive tools
   #interactivetools_prefix: interactivetool
@@ -2110,10 +2115,6 @@ base_app_main: &BASE_APP_MAIN
   # <config_dir>.
   job_metrics_config_file: "{{ galaxy_config_dir }}/job_metrics_conf.yml"
 
-  # This option allows users to see the job metrics (except for
-  # environment variables).
-  expose_potentially_sensitive_job_metrics: true
-
   # Rather than specifying a job_metrics_config_file, the definition of
   # the metrics to enable can be embedded into Galaxy's config with this
   # option. This has no effect if a job_metrics_config_file is used.
@@ -2126,7 +2127,7 @@ base_app_main: &BASE_APP_MAIN
 
   # This option allows users to see the job metrics (except for
   # environment variables).
-  #expose_potentially_sensitive_job_metrics: false
+  expose_potentially_sensitive_job_metrics: true
 
   # Enable the API for sample tracking
   #enable_legacy_sample_tracking_api: false
@@ -2444,6 +2445,19 @@ base_app_main: &BASE_APP_MAIN
   # <config_dir>.
   workflow_schedulers_config_file: "{{ galaxy_config_dir  }}/workflow_schedulers_conf.xml"
 
+  # Workflows launched with URI/URL inputs that are not marked as
+  # 'deferred' are "materialized" (or undeferred) by the workflow
+  # scheduler. This might be a lengthy process. Setting this to 'True'
+  # will place the invocation back in the queue after materialization
+  # before scheduling the workflow so it is less likely to starve other
+  # workflow scheduling. Ideally, Galaxy would allow more fine grain
+  # control of handlers but until then, this provides a way to tip the
+  # balance between "doing more work" and "being more fair". The default
+  # here is pretty arbitrary - it has been to False to optimize Galaxy
+  # for automated, single user applications where "fairness" is mostly
+  # irrelevant.
+  #workflow_scheduling_separate_materialization_iteration: false
+
   # If using job concurrency limits (configured in job_config_file),
   # several extra database queries must be performed to determine the
   # number of jobs a user has dispatched to a given destination.  By
@@ -2573,6 +2587,13 @@ base_app_main: &BASE_APP_MAIN
   # as threshold (above threshold: regular select fields will be used)
   #select_type_workflow_threshold: -1
 
+  # API key for OpenAI (https://openai.com/) to enable the wizard (or
+  # more?)
+  #openai_api_key: null
+
+  # OpenAI model to enable the wizard.
+  #openai_model: gpt-4o
+
   # Allow the display of tool recommendations in workflow editor and
   # after tool execution. If it is enabled and set to true, please
   # enable 'tool_recommendation_model_path' as well
@@ -2684,6 +2705,21 @@ base_app_main: &BASE_APP_MAIN
   # This requires the help_forum_api_url to be set.
   enable_help_forum_tool_panel_integration: true
 
+  # Directory to store temporary files for file sources. This defaults
+  # to new_file_path if not set.
+  #file_source_temp_dir: null
+
+  # Default value for use_temp_files for webdav plugins that don't
+  # explicitly declare this.
+  #file_source_webdav_use_temp_files: true
+
+  # Number of seconds before file source content listings are refreshed.
+  # Shorter times will result in more queries while browsing a file
+  # sources. Longer times will result in fewer requests to file sources
+  # but outdated contents might be displayed to the user. Currently only
+  # affects s3fs file sources.
+  #file_source_listings_expiry_time: 60
+
   # TODO(hxr): UNDOCUMENTED
   ucsc_build_sites: "{{ galaxy_config_dir }}/ucsc_build_sites.txt"
 
diff --git a/templates/galaxy/config/oidc_config.xml b/templates/galaxy/config/oidc_config.xml
index 2520e72f6..6ccd61d38 100644
--- a/templates/galaxy/config/oidc_config.xml
+++ b/templates/galaxy/config/oidc_config.xml
@@ -13,7 +13,7 @@ built-in type, which could be any of the following types: int; long; float; str;
 Note that the values of these attributes are case-sensitive.
 -->
 <OIDC>
-    <Setter Property="VERIFY_SSL" Value="True" Type="bool"/>
+    <Setter Property="VERIFY_SSL" Value="False" Type="bool"/>
     <Setter Property="REQUESTS_TIMEOUT" Value="3600" Type="float"/>
     <!-- The unit of value is seconds -->
     <Setter Property="ID_TOKEN_MAX_AGE" Value="3600" Type="float"/>
diff --git a/templates/galaxy/config/tool_conf.xml.j2 b/templates/galaxy/config/tool_conf.xml.j2
index de713639a..c6e3bb680 100644
--- a/templates/galaxy/config/tool_conf.xml.j2
+++ b/templates/galaxy/config/tool_conf.xml.j2
@@ -44,6 +44,7 @@
     <tool file="${model_tools_path}/zip_collection.xml" />
     <tool file="${model_tools_path}/filter_failed_collection.xml" />
     <tool file="${model_tools_path}/filter_empty_collection.xml" />
+    <tool file="${model_tools_path}/filter_null.xml" />
     <tool file="${model_tools_path}/flatten_collection.xml" />
     <tool file="${model_tools_path}/merge_collection.xml" />
     <tool file="${model_tools_path}/relabel_from_file.xml" />

From 503b60fba59edb03f8567b7b42c07495c8b3c541 Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Bj=C3=B6rn=20Gr=C3=BCning?= <bjoern@gruenings.eu>
Date: Sat, 1 Feb 2025 09:48:54 +0100
Subject: [PATCH 2/3] set to true

---
 templates/galaxy/config/oidc_config.xml | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/templates/galaxy/config/oidc_config.xml b/templates/galaxy/config/oidc_config.xml
index 6ccd61d38..2520e72f6 100644
--- a/templates/galaxy/config/oidc_config.xml
+++ b/templates/galaxy/config/oidc_config.xml
@@ -13,7 +13,7 @@ built-in type, which could be any of the following types: int; long; float; str;
 Note that the values of these attributes are case-sensitive.
 -->
 <OIDC>
-    <Setter Property="VERIFY_SSL" Value="False" Type="bool"/>
+    <Setter Property="VERIFY_SSL" Value="True" Type="bool"/>
     <Setter Property="REQUESTS_TIMEOUT" Value="3600" Type="float"/>
     <!-- The unit of value is seconds -->
     <Setter Property="ID_TOKEN_MAX_AGE" Value="3600" Type="float"/>

From e298715ddb30e8eb9eafc993a26d83171936c2fa Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Bj=C3=B6rn=20Gr=C3=BCning?= <bjoern@gruenings.eu>
Date: Sat, 1 Feb 2025 09:53:33 +0100
Subject: [PATCH 3/3] update 24.2

---
 group_vars/sn06/sn06.yml | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/group_vars/sn06/sn06.yml b/group_vars/sn06/sn06.yml
index 58e52fb83..c98ebb8a9 100644
--- a/group_vars/sn06/sn06.yml
+++ b/group_vars/sn06/sn06.yml
@@ -323,7 +323,7 @@ galaxy_instance_hostname: usegalaxy.eu
 galaxy_config_style: yaml
 
 galaxy_repo: "https://github.com/usegalaxy-eu/galaxy.git"
-galaxy_commit_id: "release_24.1_europe"
+galaxy_commit_id: "release_24.2_europe"
 galaxy_force_checkout: true # discard any modified files
 #galaxy_admin_email_from: 'noreply@usegalaxy.eu'