From e903e2a3487c694e738b58fb91ba8a59f5e802b3 Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Bj=C3=B6rn=20Gr=C3=BCning?= Date: Sun, 17 Dec 2023 23:23:31 +0100 Subject: [PATCH 1/2] try fixing braker --- files/galaxy/tpv/tools.yml | 9 ++++++++- 1 file changed, 8 insertions(+), 1 deletion(-) diff --git a/files/galaxy/tpv/tools.yml b/files/galaxy/tpv/tools.yml index 6611a5c2c..8036f7ba6 100644 --- a/files/galaxy/tpv/tools.yml +++ b/files/galaxy/tpv/tools.yml @@ -1043,7 +1043,14 @@ tools: require: - singularity - toolshed.g2.bx.psu.edu/repos/genouest/braker3/braker3/.*: + toolshed.g2.bx.psu.edu/repos/genouest/braker3/braker3/3.0.6+galaxy2: + mem: 4 + cores: 6 + env: + GENEMARK_PATH: "/usr/local/tools/_conda/envs/__braker3@3.0.6/bin/genemark/bin/" + PROTHINT_PATH: "/usr/local/tools/_conda/envs/__braker3@3.0.6/bin/genemark/bin/gmes/ProtHint/bin/" + + toolshed.g2.bx.psu.edu/repos/genouest/braker3/braker3/3.0.3.*: mem: 4 cores: 6 params: From 048416b3ca049eb576a45309273e45d131f7d40a Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Bj=C3=B6rn=20Gr=C3=BCning?= Date: Sun, 17 Dec 2023 23:25:02 +0100 Subject: [PATCH 2/2] Update tools.yml --- files/galaxy/tpv/tools.yml | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/files/galaxy/tpv/tools.yml b/files/galaxy/tpv/tools.yml index 8036f7ba6..d7a0a6ffe 100644 --- a/files/galaxy/tpv/tools.yml +++ b/files/galaxy/tpv/tools.yml @@ -1050,7 +1050,7 @@ tools: GENEMARK_PATH: "/usr/local/tools/_conda/envs/__braker3@3.0.6/bin/genemark/bin/" PROTHINT_PATH: "/usr/local/tools/_conda/envs/__braker3@3.0.6/bin/genemark/bin/gmes/ProtHint/bin/" - toolshed.g2.bx.psu.edu/repos/genouest/braker3/braker3/3.0.3.*: + toolshed.g2.bx.psu.edu/repos/genouest/braker3/braker3/3.0.3.*: mem: 4 cores: 6 params: