From ae1d91e1eb09b650d49b32d005c34668bfc9affd Mon Sep 17 00:00:00 2001 From: B0r1sD Date: Wed, 17 Jul 2024 13:57:51 +0000 Subject: [PATCH] Update Galaxy tools --- tools_iuc.yaml | 6 ++++++ tools_iuc.yaml.lock | 43 +++++++++++++++++++++++++++++++++++++++++++ 2 files changed, 49 insertions(+) diff --git a/tools_iuc.yaml b/tools_iuc.yaml index ccbba3d5..05e7ee9f 100644 --- a/tools_iuc.yaml +++ b/tools_iuc.yaml @@ -4271,3 +4271,9 @@ tools: - name: tracegroomer owner: iuc tool_panel_section_label: Metabolomics +- name: mg_toolkit_original_metadata + owner: iuc + tool_panel_section_label: Metagenomic Analysis +- name: diffbind + owner: bgruening + tool_panel_section_label: Peak Calling diff --git a/tools_iuc.yaml.lock b/tools_iuc.yaml.lock index 09b0a04b..e0647225 100644 --- a/tools_iuc.yaml.lock +++ b/tools_iuc.yaml.lock @@ -1905,6 +1905,7 @@ tools: - name: bcftools_consensus owner: iuc revisions: + - 1171446da5db - 147de996e34f - 1829900b5dcd - d37e313a41be @@ -1913,6 +1914,7 @@ tools: owner: iuc revisions: - 01fd33bc2e75 + - 1001172b5089 - c37b684e7f4e - f0d44631365f tool_panel_section_label: Variant Calling @@ -1921,6 +1923,7 @@ tools: revisions: - 021693fdadaa - 19905c025d2a + - 1ca7418e46ee - ebb2e12a6de1 tool_panel_section_label: Variant Calling - name: bcftools_csq @@ -1928,12 +1931,14 @@ tools: revisions: - 039ea3f1dea9 - 64a8f7dae3ad + - e6f4badbe6f3 - f01b2c9506b9 tool_panel_section_label: Variant Calling - name: bcftools_plugin_frameshifts owner: iuc revisions: - 03e6fb76e969 + - 2e303fcd3b0c - 399b40b2bcab - 48ac4d611e92 tool_panel_section_label: Variant Calling @@ -1943,11 +1948,13 @@ tools: - 05928e15da21 - 36960e552ddc - 7ef488b08a23 + - ee85030e893d tool_panel_section_label: Variant Calling - name: bcftools_cnv owner: iuc revisions: - 13fe14c56f6d + - 143796b504eb - 6d35a3780bfd - 8627b2b383b4 tool_panel_section_label: Variant Calling @@ -4056,6 +4063,7 @@ tools: - 08296952d12f - 6b6c992d3a14 - 874cc12ae316 + - abd489215f73 tool_panel_section_label: Variant Calling - name: medaka_consensus owner: iuc @@ -4740,12 +4748,14 @@ tools: - 86296490704e - 9473302f4588 - af163c712539 + - b84fda8ebef0 tool_panel_section_label: Variant Calling - name: bcftools_stats owner: iuc revisions: - a2f8dc22d7c0 - b17394940c7a + - bf8325a07ce7 - e8af591435d1 tool_panel_section_label: Variant Calling - name: samtools_markdup @@ -4787,23 +4797,27 @@ tools: owner: iuc revisions: - 19ece8afbaab + - 30a201c9c310 - 4a89c6f84425 tool_panel_section_label: SAM/BAM - name: qualimap_multi_bamqc owner: iuc revisions: - 16beb83e370c + - 17b35d23731f - e38af83df163 tool_panel_section_label: SAM/BAM - name: qualimap_rnaseq owner: iuc revisions: + - 35e00077ba61 - 43a1c3e1a4d0 tool_panel_section_label: RNA Analysis - name: qualimap_counts owner: iuc revisions: - 1672b9bea89b + - 72927fc9e9ed - d696cf0a9622 tool_panel_section_label: RNA Analysis - name: data_manager_build_kma_index @@ -6387,6 +6401,7 @@ tools: - name: hifiasm owner: bgruening revisions: + - 284a1cb82b61 - 366a11d316a7 - df25d4fb79b7 tool_panel_section_label: Assembly @@ -6533,6 +6548,7 @@ tools: owner: iuc revisions: - 13851aefa67a + - 1e34d2e3d285 - 9002633b4737 - name: kraken_taxonomy_report owner: iuc @@ -6608,22 +6624,26 @@ tools: revisions: - 03191140c66a - 31ea13dfe5e6 + - 56556e1267de tool_panel_section_label: Variant Calling - name: bcftools_view owner: iuc revisions: - 38d75661c235 - abc3ced31cd1 + - c2ab91a0d506 tool_panel_section_label: Variant Calling - name: bcftools_roh owner: iuc revisions: + - 1a989b4110da - 78cd8b69da4c - bdc67eeb0bc9 tool_panel_section_label: Variant Calling - name: bcftools_reheader owner: iuc revisions: + - 3b7b1fe7b937 - 8057cf55fa41 - b7be725976b6 tool_panel_section_label: Variant Calling @@ -6632,10 +6652,12 @@ tools: revisions: - a850902cac64 - f64e7ca2efd2 + - fdec14f69010 tool_panel_section_label: Variant Calling - name: bcftools_isec owner: iuc revisions: + - 15da1ddcfeff - 63aabc920911 - 81e4014fa809 tool_panel_section_label: Variant Calling @@ -6644,17 +6666,20 @@ tools: revisions: - 3eac729e66c9 - 5a321fab1fe4 + - 91c1e57d5c7f tool_panel_section_label: Variant Calling - name: bcftools_filter owner: iuc revisions: - 33bd9301568c + - 5d6653c989cb - 656a916779fe tool_panel_section_label: Variant Calling - name: bcftools_convert_to_vcf owner: iuc revisions: - 4935320a59a8 + - 7291189e98b4 - de68c11034f6 tool_panel_section_label: Variant Calling - name: bcftools_convert_from_vcf @@ -6662,17 +6687,20 @@ tools: revisions: - 1137ce8efc1e - cacc9970727a + - d58d2e8c7a57 tool_panel_section_label: Variant Calling - name: bcftools_annotate owner: iuc revisions: - 3f62d4939d54 + - 95815a0bb307 - e075b1be5abb tool_panel_section_label: Variant Calling - name: bcftools_plugin_split_vep owner: iuc revisions: - 3b6cd8086498 + - b317ccd39088 - d55feecb6dc1 tool_panel_section_label: Variant Calling - name: bcftools_plugin_setgt @@ -6680,6 +6708,7 @@ tools: revisions: - 262bba5b90ef - 2c4941386820 + - 681bdf1e22ff tool_panel_section_label: Variant Calling - name: bamutil_diff owner: iuc @@ -8425,20 +8454,24 @@ tools: owner: iuc revisions: - 48d9421bf176 + - 4ecdea4cbea1 tool_panel_section_label: Single-cell - name: snapatac2_clustering owner: iuc revisions: + - 509baa4a2da0 - 94ae400dde2f tool_panel_section_label: Single-cell - name: snapatac2_plotting owner: iuc revisions: - c01f0a08ab43 + - fbf62973e556 tool_panel_section_label: Single-cell - name: snapatac2_peaks_and_motif owner: iuc revisions: + - b9013e0e2b00 - f9647da40db3 tool_panel_section_label: Single-cell - name: filter_tabular @@ -8687,3 +8720,13 @@ tools: revisions: - 3cb0128a59a6 tool_panel_section_label: Metabolomics +- name: mg_toolkit_original_metadata + owner: iuc + revisions: + - 2eef3b6f1c84 + tool_panel_section_label: Metagenomic Analysis +- name: diffbind + owner: bgruening + revisions: + - f907216064f6 + tool_panel_section_label: Peak Calling