diff --git a/crates/mako/src/module_graph.rs b/crates/mako/src/module_graph.rs
index a0d458d69..c374e1fdc 100644
--- a/crates/mako/src/module_graph.rs
+++ b/crates/mako/src/module_graph.rs
@@ -8,7 +8,7 @@ use mako_core::petgraph::visit::IntoEdgeReferences;
 use mako_core::petgraph::Direction;
 use mako_core::tracing::debug;
 
-use crate::module::{Dependencies, Dependency, Module, ModuleId};
+use crate::module::{Dependencies, Dependency, Module, ModuleId, ResolveType};
 
 #[derive(Debug)]
 pub struct ModuleGraph {
@@ -238,13 +238,21 @@ impl ModuleGraph {
         targets
     }
 
-    pub fn remove_dependency_module_by_source(&mut self, module_id: &ModuleId, source: &String) {
+    pub fn remove_dependency_module_by_source_and_resolve_type(
+        &mut self,
+        module_id: &ModuleId,
+        source: &String,
+        resolve_type: ResolveType,
+    ) {
         let mut edges = self.get_edges(module_id, Direction::Outgoing);
 
         while let Some((edge_index, _node_index)) = edges.next(&self.graph) {
             let dependencies = self.graph.edge_weight_mut(edge_index).unwrap();
 
-            if let Some(to_del_dep) = dependencies.iter().position(|dep| *source == dep.source) {
+            if let Some(to_del_dep) = dependencies
+                .iter()
+                .position(|dep| *source == dep.source && dep.resolve_type == resolve_type)
+            {
                 dependencies.take(&dependencies.iter().nth(to_del_dep).unwrap().clone());
 
                 if dependencies.is_empty() {
diff --git a/crates/mako/src/plugins/farm_tree_shake/shake/skip_module.rs b/crates/mako/src/plugins/farm_tree_shake/shake/skip_module.rs
index 8a37096d4..8719e93e4 100644
--- a/crates/mako/src/plugins/farm_tree_shake/shake/skip_module.rs
+++ b/crates/mako/src/plugins/farm_tree_shake/shake/skip_module.rs
@@ -175,10 +175,13 @@ pub(super) fn skip_module_optimize(
         let mut to_insert = vec![];
         let mut to_insert_deps = vec![];
         let mut to_delete = false;
+        let mut resolve_type = None;
 
         match &mut stmt {
             ModuleItem::ModuleDecl(module_decl) => match module_decl {
                 ModuleDecl::Import(import_decl) => {
+                    resolve_type = Some(ResolveType::Import);
+
                     for replace in replaces {
                         let mut matched_index = None;
                         let mut matched_ident = None;
@@ -230,6 +233,8 @@ pub(super) fn skip_module_optimize(
                 ModuleDecl::ExportDecl(_) => {}
                 ModuleDecl::ExportNamed(export_named) => {
                     if export_named.src.is_some() {
+                        resolve_type = Some(ResolveType::ExportNamed);
+
                         for replace in replaces {
                             let mut matched_index = None;
                             let mut matched_ident = None;
@@ -307,7 +312,11 @@ pub(super) fn skip_module_optimize(
         }
 
         if to_delete {
-            module_graph.remove_dependency_module_by_source(module_id, source);
+            module_graph.remove_dependency_module_by_source_and_resolve_type(
+                module_id,
+                source,
+                resolve_type.unwrap(),
+            );
         }
         for dep in to_insert_deps {
             module_graph.add_dependency(module_id, &dep.source.clone().into(), dep);
diff --git a/crates/node/index.d.ts b/crates/node/index.d.ts
index 7164e29c4..fe4f3c8bb 100644
--- a/crates/node/index.d.ts
+++ b/crates/node/index.d.ts
@@ -33,14 +33,15 @@ export interface BuildParams {
       alias?: Record<string, string>;
       extensions?: string[];
     };
-    manifest?: boolean;
-    manifestConfig?: {
-      fileName: string;
-      basePath: string;
-    };
+    manifest?:
+      | false
+      | {
+          fileName: string;
+          basePath: string;
+        };
     mode?: 'development' | 'production';
     define?: Record<string, string>;
-    devtool?: 'source-map' | 'inline-source-map' | 'none';
+    devtool?: false | 'source-map' | 'inline-source-map';
     externals?: Record<
       string,
       | string
@@ -58,29 +59,28 @@ export interface BuildParams {
         }
     >;
     copy?: string[];
-    codeSplitting?: 'auto' | 'none';
+    codeSplitting?: false | 'auto';
     providers?: Record<string, string[]>;
     publicPath?: string;
     inlineLimit?: number;
     targets?: Record<string, number>;
     platform?: 'node' | 'browser';
-    hmr?: boolean;
-    hmrPort?: string;
-    hmrHost?: string;
-    px2rem?: boolean;
-    px2remConfig?: {
-      root: number;
-      propBlackList: string[];
-      propWhiteList: string[];
-      selectorBlackList: string[];
-      selectorWhiteList: string[];
-    };
+    hmr?: false | { host?: string; port?: number };
+    px2rem?:
+      | false
+      | {
+          root?: number;
+          propBlackList?: string[];
+          propWhiteList?: string[];
+          selectorBlackList?: string[];
+          selectorWhiteList?: string[];
+        };
     stats?: boolean;
     hash?: boolean;
     autoCSSModules?: boolean;
     ignoreCSSParserErrors?: boolean;
     dynamicImportToRequire?: boolean;
-    umd?: string;
+    umd?: false | string;
     transformImport?: {
       libraryName: string;
       libraryDirectory?: string;
@@ -91,29 +91,33 @@ export interface BuildParams {
     ignores?: string[];
     moduleIdStrategy?: 'hashed' | 'named';
     minify?: boolean;
-    _minifish?: {
-      mapping: Record<string, string>;
-      metaPath?: string;
-      inject?: Record<
-        string,
-        | { from: string; exclude?: string; preferRequire?: boolean }
-        | {
-            from: string;
-            named: string;
-            exclude?: string;
-            preferRequire?: boolean;
-          }
-        | {
-            from: string;
-            namespace: true;
-            exclude?: string;
-            preferRequire?: boolean;
-          }
-      >;
-    };
-    optimization?: {
-      skipModules?: boolean;
-    };
+    _minifish?:
+      | false
+      | {
+          mapping: Record<string, string>;
+          metaPath?: string;
+          inject?: Record<
+            string,
+            | { from: string; exclude?: string; preferRequire?: boolean }
+            | {
+                from: string;
+                named: string;
+                exclude?: string;
+                preferRequire?: boolean;
+              }
+            | {
+                from: string;
+                namespace: true;
+                exclude?: string;
+                preferRequire?: boolean;
+              }
+          >;
+        };
+    optimization?:
+      | false
+      | {
+          skipModules?: boolean;
+        };
   };
   hooks: JsHooks;
   watch: boolean;
diff --git a/e2e/fixtures/tree-shaking_require_esm/mako.config.json b/e2e/fixtures/tree-shaking_require_esm/mako.config.json
index 48669c82c..492310c8b 100644
--- a/e2e/fixtures/tree-shaking_require_esm/mako.config.json
+++ b/e2e/fixtures/tree-shaking_require_esm/mako.config.json
@@ -2,5 +2,8 @@
   "mode": "production",
   "minify": false,
   "hmr": false,
-  "_treeShaking": "basic"
+  "_treeShaking": "basic",
+  "optimization": {
+    "skipModules": true
+  }
 }