diff --git a/docs/introduction.md b/docs/introduction.md index 604f1e06de..2399fa25b1 100644 --- a/docs/introduction.md +++ b/docs/introduction.md @@ -26,10 +26,10 @@ Recombination Graph (ARG); succinct tree sequences are fully compatible with thi formulation, and tskit is a therefore a powerful platform for processing ARGs. The tree sequence format is output by a number of external software libraries -and programs (such as [msprime](https://github.com/tskit-dev/msprime), +and programs (such as [msprime](https://tskit.dev/msprime/docs), [SLiM](https://github.com/MesserLab/SLiM), -[fwdpp](http://molpopgen.github.io/fwdpp/), and -[tsinfer](https://tsinfer.readthedocs.io/en/latest/)) that either simulate or +[fwdpp](https://fwdpp.readthedocs.io/en/), and +[tsinfer](https://tskit.dev/tsinfer/docs/)) that either simulate or infer the evolutionary history of genetic sequences. This library provides the underlying functionality that such software uses to load, examine, and manipulate tree sequences, including efficient methods for calculating @@ -42,5 +42,5 @@ tutorial material to introduce you to the key concepts behind succinct tree sequ :::{note} This documentation is under active development and may be incomplete in some areas. If you would like to help improve it, please open an issue or -pull request at [GitHub](https://github.com/tskit-dev/tskit). +pull request on [GitHub](https://github.com/tskit-dev/tskit). :::