_config.yml

# Welcome to Jekyll!
#
# This config file is meant for settings that affect your whole blog, values
# which you are expected to set up once and rarely edit after that. If you find
# yourself editing this file very often, consider using Jekyll's data files
# feature for the data you need to update frequently.
#
# For technical reasons, this file is *NOT* reloaded automatically when you use
# 'bundle exec jekyll serve'. If you change this file, please restart the server process.
#
# If you need help with YAML syntax, here are some quick references for you: 
# https://learn-the-web.algonquindesign.ca/topics/markdown-yaml-cheat-sheet/#yaml
# https://learnxinyminutes.com/docs/yaml/
#
# Site settings
# These are used to personalize your new site. If you look in the HTML files,
# you will see them accessed via {{ site.title }}, {{ site.email }}, and so on.
# You can create any custom variable you would like, and they will be accessible
# in the templates via {{ site.myvariable }}.

title: HDR UK Phenotype Library
email: s.denaxas@ucl.ac.uk
description: >- # this means to ignore newlines until "baseurl:"
  HDR UK Phenotype Library
baseurl: "" # the subpath of your site, e.g. /blog
url: "https://portal.caliberresearch.org" # the base hostname & protocol for your site, e.g. http://example.com
twitter_username: SpirosDenaxas
github_username:  spiros
google_analytics: UA-32217823-3

# Build settings
theme: minima

whitelist:
  - jekyll-redirect-from

plugins:
  - jekyll-feed
  - jekyll-redirect-from

collections:
  phenotypes:
    sort_by: phenotype_id
    output: true
    permalink: /phenotypes/:name

algolia:
  application_id: 'IXFI6M2LKK'
  index_name: phenotypes
  search_only_api_key: d8ba6b6a391cf5b4074fbd3191b77c37
  settings:
    searchableAttributes:
      - title
      - phenotype_id
      - content
      - collection,categories,tags
      - type
      - group
      - clinical_terminologies
  files_to_exclude:
    - index.md
    - README.md
    - phenotypes.md
    - assets/*


# Exclude from processing.
# The following items will not be processed, by default.
# Any item listed under the `exclude:` key here will be automatically added to
# the internal "default list".
#
# Excluded items can be processed by explicitly listing the directories or
# their entries' file path in the `include:` list.
#
exclude:
  - README.md
  - .sass-cache/
  - .jekyll-cache/
  - gemfiles/
  - Gemfile
  - Gemfile.lock
  - node_modules/
  - vendor/bundle/
  - vendor/cache/
  - vendor/gems/
  - vendor/ruby/
  - sample_phenotype_1233456.md