Main tool: QUAST

Code repository: https://github.com/ablab/quast

Additional tools:

• minimap2 2.28-r1209

Basic information on how to use this tool:

• executable: quast.py
• help: --help
• version: --version
• description: Genome assembly evaluation tool

Additional information:

This image provides minimal requirements of QUAST. Some of the functions may not work. Please use staphb/quast:5.3.0 for the full functionality of the program.

Full documentation: https://quast.sourceforge.net/docs/manual.html

# basic statistics without reference
quast.py contigs.fasta
# genome evaluation with reference
quast.py contigs.fasta -r reference.fasta.gz
# metagenomic assemblies
metaquast.py contigs_1 contigs_2 ... -r reference_1,reference_2,reference_3,...