forked from plazi/TaxPub
-
Notifications
You must be signed in to change notification settings - Fork 0
/
Copy pathtaxpubcustom-elements-NS0.ent
291 lines (235 loc) · 9.33 KB
/
taxpubcustom-elements-NS0.ent
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
<!-- $Id: taxpubcustom-elements-NS0.ent 172 2011-06-06 19:37:07Z tcatapano $ -->
<!-- ============================================================= -->
<!-- PUBLIC DOCUMENT TYPE DEFINITION -->
<!-- TYPICAL INVOCATION -->
<!--
"-//TaxPub//DTD Taxonomic Treatment Publishing Elements v0.5 20110606//EN"
Delivered as file "taxpubcustom-elements.ent" -->
<!-- ============================================================= -->
<!ELEMENT tp:taxon-treatment (tp:treatment-meta?, tp:nomenclature , (tp:treatment-sec | tp:taxon-treatment)*, ref-list? ) >
<!ATTLIST tp:taxon-treatment
auth-code CDATA #IMPLIED
%taxpub-namespace-att; >
<!--
~tp:taxon-treatment~
~note: A publication or or section of a publication documenting the features or distribution
of a related group of organisms (called a "taxon", plural "taxa") in ways adhering to
highly formalized conventions. ~
~~
~~
-->
<!ELEMENT tp:treatment-meta %sec-meta-model; >
<!--
~tp:treatment-meta~
~note: Bibliographic metadata describing at taxonomic treatment ~
~~
~~
-->
<!ELEMENT tp:nomenclature %nomenclature-model; >
<!--
~tp:nomenclature~
~note: The heading of a taxonomic treatment, containing the scientific name of the taxon
described by the treatment, and possibly the authority for the taxon, citations to
previous descriptions, designations of type-genus, and type-species, and other
information. ~
~~
~~
-->
<!--
<!ELEMENT tp:mixed-nomenclature %mixed-nomenclature-model; >
-->
<!ELEMENT tp:treatment-sec %taxon-sec-model; >
<!ATTLIST tp:treatment-sec
%sec-atts; >
<!--
~tp:treatment-sec~
~note: A section of a taxonomic treatment. For example, diagnosis, materials examined,
etymology, etc,,, ~
~~
~~
-->
<!ELEMENT tp:taxon-authority (#PCDATA | object-id | tp:taxon-authority-part)* >
<!ATTLIST tp:taxon-authority
role CDATA #IMPLIED>
<!--
~tp:taxon-authority~
~note: Elements that are linked to the name in the original treatment of a taxon as
designated by the authors of the respective original publication. ~
~modelNote: This can be anything from a single author to a whole string including author,
year, publication page, etc.. Formica rufa L. or Formica rufa Linnaeus 1758:580 ~
~~
-->
<!ELEMENT tp:taxon-authority-part (#PCDATA | object-id | tp:taxon-authority-part)* >
<!ATTLIST tp:taxon-authority-part
tp:taxon-authority-part-type CDATA #IMPLIED>
<!--
~tp:taxon-authority-part~
~note: An element that is linked to the name in the original treatment of a taxon as
designated by the authors of the respective original publication. ~
~modelNote: This is a single element in of the taxon-authority element. er.g. a single author
(Linnaeus), the year of publication (1758) >~
~~
-->
<!ELEMENT tp:taxon-status (#PCDATA) >
<!ATTLIST tp:taxon-status
%might-link-atts; >
<!--
~tp:taxon-status~
~note: The nomenclatorial status of a particular taxon. ~
~modelNote: This can designate an act that happened in an earlier, but cited citation, or
that happens within this treatment. Eg syn. vs. syn. nov.: The former refers to a
synonymy made, the latter to a synonym being proposed in the actual treatment. ~
~~
-->
<!ELEMENT tp:taxon-identifier (#PCDATA) >
<!ATTLIST tp:taxon-identifier
%might-link-atts; >
<!--
~tp:taxon-identifier~
~note: A standard identifier associated with a particular taxon. ~
~modelNote: The taxon-identifier could be a LSID or other GUID ~
~~
-->
<!ELEMENT tp:nomenclature-citation-list (tp:nomenclature-citation+) >
<!--
~tp:nomenclature-citation-list~
~note: A section in a treatment that includes the citation of one or several previous
treatments of the taxon. ~
~~
~~
-->
<!ELEMENT tp:nomenclature-citation (tp:taxon-name, tp:taxon-author*, (tp:type-genus | tp:type-species)?, (mixed-citation | xref)?, tp:material-citation*, tp:taxon-status?, comment?) >
<!ATTLIST tp:nomenclature-citation
content-type CDATA #IMPLIED >
<!--
~tp:nomenclature-citation~
~note: The citation of a nomenclatorial act or other citation of the taxon in the published
record. ~
~~
~~
-->
<!ELEMENT tp:type-genus (tp:taxon-name, tp:material-location?) >
<!--
~tp:type-genus~
~note: The species selected as the reference species at the moment of the description of a
new genus level taxon. ~
~~
~~
-->
<!ELEMENT tp:type-species (tp:taxon-name, tp:material-location?) >
<!--
~tp:type-species~
~note: The specimen upon which the species or infraspecific level taxon is based and which is
explicitly designated as the holotype. ~
~modelNote: The status is defined by the code, of which the designation as holotype is
requested to create an available name , lectotype the selection of a type from a series
of syntypes and neotype the designation of a new type. These designations are ruled by
the Code (see ICZN ). The designation of paratypes, androtypes is arbitrary. ~
~~
-->
<!ELEMENT tp:type-status (#PCDATA | object-id)* >
<!ATTLIST tp:type-status
designation (y|n) 'n' >
<!--
~tp:type-status~
~~
~~
~~
-->
<!ELEMENT tp:taxon-type-location (#PCDATA | object-id)* >
<!--
~tp:taxon-type-location~
~note: The institution where a type specimen is housed. ~
~modelNote: From a nomenclatorial point of view the name of depositary institution of the
holotype has to be explicitely mentioned in a treatment of a new species level taxon in
order to create an available name. Acronoyms of the institutions can be used. The
location of the institution has to be provided. Institutions can be private collections
to public natural history museums. ~
~~
-->
<!-- RED ELEMENTS -->
<!ELEMENT tp:taxon-name (#PCDATA | tp:taxon-name-part | object-id)* >
<!ATTLIST tp:taxon-name
auth-code CDATA #IMPLIED
rank CDATA #IMPLIED
reg CDATA #IMPLIED >
<!--
~tp:taxon-name~
~note: The name of a taxon. ~
~modelNote: Generally this is a scientific name following the convention of the Codes ruling
nomenclature (eg International Code for Zoological Nomenclature (ICZN ), but if can also
be a vernacular name as used in field guides. ~
~~
-->
<!ELEMENT tp:taxon-name-part (#PCDATA | tp:taxon-name-part | object-id)* >
<!ATTLIST tp:taxon-name-part
taxon-name-part-type CDATA #REQUIRED
reg CDATA #IMPLIED >
<!--
~tp:taxon-name-part~
~note: A component of taxonomic name. For example, specific epithet, genus name, etc... ~
~~
~~
-->
<!ELEMENT tp:descriptive-statement (#PCDATA | tp:descriptive-statement-part | object-id)* >
<!ATTLIST tp:descriptive-statement
%might-link-atts; >
<!--
~tp:descriptive-statement~
~note: The description of a morphological trait.~
~~
~~
-->
<!ELEMENT tp:descriptive-statement-part (#PCDATA | object-id)* >
<!ATTLIST tp:descriptive-statement-part
%might-link-atts; >
<!--
~tp:descriptive-statement-part~
~note: An individual component of a description morphological trait. ~
~modelNote: This can be the character (e.g. head) or the character state (round, ovoid,
red,..) ~
~~
-->
<!ELEMENT tp:material-citation (#PCDATA | named-content | tp:collecting-event | object-id | tp:type-status | tp:material-location | tp:taxon-name | xref)*>
<!--
~tp:material-citation~
~note: A reference to biological material (e.g., a specimen, an observation) including those
used as the basis of a taxonomic description. ~
~modelNote: These can be very cursory to very detailed ("Costa Rica" to all the details
recorded during the collection). ~
~~
-->
<!ELEMENT tp:material-location (#PCDATA | object-id)* >
<!--
~tp:material-location~
~note: The physical location of the material referenced in the material citation. ~
~modelNote: The material-location can be a collection given by its acronym (e.g. AMNH for
American Museum of Natural History, New York) ~
~~
-->
<!ELEMENT tp:collecting-event (#PCDATA | tp:collecting-location | date | tp:taxon-name | object-id | named-content)* >
<!--
~tp:collecting-event~
~note: The specific spatio-temporal event during which observations have been made or
specimens have been collected. ~
~modelNote: This can refer to a specific collection or many collections made. For example, if
a Malaise trap is set and collected thousands of species, then the collecting-event
remains the same for all the specimens. ~
~~
-->
<!ELEMENT tp:collecting-location (object-id*, tp:location*, comment? ) >
<!--
~tp:collecting-location~
~note: The specific location or circumscription of the location of a collecting event. ~
~~
~~
-->
<!ELEMENT tp:location (#PCDATA %country-elements;)* >
<!ATTLIST tp:location
location-type CDATA #IMPLIED >
<!--
~tp:location~
~note: A named spatial area. ~
~~
~~
-->