AgnosticSNP quality is a string and should be float

[courcelm]

AgnosticSNP quality is a string and should be float

This is an issue for comparison because in python 2.7:

'0.001' > 20
True

For SNP filter this will silently fail:

    def filter(self, chromosome, **kwargs):

        for snp_set, snp in kwargs.iteritems():

                if snp.quality > self.threshold:

                    return SequenceSNP(snp.alt)

snp.quality must be cast to float to obtain the expected result

[tariqdaouda]

True. Where is this snippet coming from?

[courcelm]

Fixed in 1.3.1