Unknown SNP type in manifest dbSNP, for dbSNP149

[ericloud]

Below the error message:

In [1]: import pyGeno.bootstrap as B
In [2]: B.importSNPs("GRCh38p7_dbSNP149_common_all.tar.gz")
Importing polymorphism set: /u/eaudemard/dev/pyGeno/pyGeno/bootstrap_data/SNPs/GRCh38p7_dbSNP149_common_all.tar.gz... (This may take a while)
Downloading file: ftp://ftp.ncbi.nih.gov/snp/organisms/human_9606_b149_GRCh38p7/VCF/common_all_20161122.vcf.gz...
done.
---------------------------------------------------------------------------
FutureWarning                             Traceback (most recent call last)
<ipython-input-2-e9741c79a81d> in <module>()
----> 1 B.importSNPs("GRCh38p7_dbSNP149_common_all.tar.gz")

/u/eaudemard/dev/pyGeno/pyGeno/bootstrap.pyc in importSNPs(name)
    108         """Import a SNP set shipped with pyGeno. Most of the datawraps only contain URLs towards data provided by third parties."""
    109         path = os.path.join(this_dir, "bootstrap_data", "SNPs/" + name)
--> 110         PS.importSNPs(path)

/u/eaudemard/dev/pyGeno/pyGeno/importation/SNPs.pyc in importSNPs(packageFile)
     69                         return _importSNPs_AgnosticSNP(setName, species, genomeSource, snpsFile)
     70                 else :
---> 71                         raise FutureWarning('Unknown SNP type in manifest %s' % typ)
     72         else :
     73                 raise KeyError("There's already a SNP set by the name %s. Use deleteSNPs() to remove it first" %setName)

FutureWarning: Unknown SNP type in manifest dbSNP

here the manifest.ini:

[package_infos]
description = SNP set for dbSNP149 that contains only common SNP. For more details: http://www.ncbi.nlm.nih.gov/variation/docs/human_variation_vcf/
maintainer = Eric Audemard
maintainer_contact = [email protected]
version = 1

[set_infos]
species = human
name = GRCh38p7_dbSNP149_common_all
type = dbSNP
source = ftp://ftp.ncbi.nih.gov/snp/organisms/human_9606_b149_GRCh38p7/VCF/common_all_20161122.vcf.gz

[snps]
filename = ftp://ftp.ncbi.nih.gov/snp/organisms/human_9606_b149_GRCh38p7/VCF/common_all_20161122.vcf.gz