ChangeLog

v1.3.0 (2020-05-05)

Drop support for Python versions under 3.6
Support broadPeak format
Refactor for better compatibility with MotifScan and MAmotif

v1.2.0 (2019-01-03)

Support python3.4+
Support MACS2-xls/narrowPeak format
Support BEDPE/SAM/BAM format and paired-end mode for sequencing reads
Drop support for Windows platform
Replace statsmodels with scikit-learn for robust linear regression
Fix a bug in summit calculation
Various performance improvements

v1.1.4 (2018-08-17)

Fix an issue in setting matplotlib backend

v1.1.3 (2018-01-19)

Fix a bug in the file name of filtered biased peaks
Fix a typo

v1.1.2 (2018-01-18)

Keep five digits for floats in the output files
Fix a typo

v1.1.1 (2018-01-11)

Add test module

Bugs fixed:

Rename the file name of filtered biased peaks

v1.1 (2017-11-07)

Improvements:

Refactor the package for better performance and compatibility

Bugs fixed:

Fix the coordinates of peaks to be consistent with the corresponding coordinate system
Fix the approximate equation in p-value calculation
Fix the summit calculation of merged common peaks