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Refactoring upload to support collection of meta-data #221

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mwhitesi opened this issue Sep 13, 2017 · 1 comment

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enhancement requires modifying reactapp

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mwhitesi commented Sep 13, 2017

Currently, only way to upload is via the subtyping module. This upload function only supports sequence based upload.

Possibly we want to add meta-data fields to upload
A refactored upload workflow so individual modules do not need to handle upload and running of other analysis. This feature is currently tightly integrated into the subtyping module. Some separation/abstraction would benefit future development
Maybe consider a division of functions in the spfy site (genome annotate, group compare, genome context)

mwhitesi added enhancement requires modifying reactapp labels

mwhitesi assigned mwhitesi and kevinkle

kevinkle added this to the v5.0.0 milestone

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mwhitesi commented Sep 14, 2017

Other things to consider:

How to properly handling complicated analyses dependency chains, especially in light of rq does not propagate earlier failures down the chain.
Do we run all the analysis for each uploaded genome (single large analysis pipeline), or do we run analysis on demand (tracking for each genome what is complete and what is not)

kevinkle mentioned this issue

Serotype and VF results cannot be separated #223

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