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.gitignore
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#Superphy
# Virtual environment
venv/*
**/venv/*
!venv/lib
!venv/requirements.txt
!venv/npm-requirements.txt
venv/lib/*
!venv/lib/python2.7
venv/lib/python2.7/*
!venv/lib/python2.7/site-packages/
venv/lib/python2.7/site-packages/*
!venv/lib/python2.7/site-packages/SuperPhy
config/*
!config/default.cfg
*.sqlite
blast/*
#######################
*.py[cod]
#Temporary Files
python_package/uploader/outputs/errors.txt
all.min.css
superphy.min.js
superphy.js
superphy/src/upload/ontology/setup.ttl
superphy/src/upload/python/outputs/*
superphy/src/upload/python/tmp/
superphy/src/upload/python/tmp/*
superphy/src/upload/python/samples/*
## Gene and genome analysis (database files)
superphy/src/upload/python/release-rgi-v3.0.1/*
superphy/src/upload/python/*.[np]hr
superphy/src/upload/python/*.[np]in
superphy/src/upload/python/*.[np]sq
superphy/src/upload/python/*.fsa
superphy/src/app/mithril/css/*
**/bower_components/*
superphy/src/app/mithril/js/mithril.js
superphy/posted_files/*
#oversize ontologies
superphy/src/upload/ontology/go.owl
superphy/src/upload/ontology/ncbitaxon.owl