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The conda-inject lines raise an error with snakefmt #246

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jbloom opened this issue Jan 1, 2025 · 1 comment
Closed

The conda-inject lines raise an error with snakefmt #246

jbloom opened this issue Jan 1, 2025 · 1 comment

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@jbloom
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jbloom commented Jan 1, 2025

Snakemake now allows injecting a global conda environment, as here.

But if I add these lines:

conda:
    "environment.yml"

then I get an error from snakefmt.

@mbhall88
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mbhall88 commented Jan 2, 2025

Duplicate of your previous issue #209. Sorry we haven’t gotten around to this. I have been working n trying to create a grammar and parser for snakemake which would make the maintenance of snakefmt a lot easier

@mbhall88 mbhall88 closed this as completed Jan 2, 2025
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