diff --git a/CITATION.cff b/CITATION.cff
index 60df6d7d4..ec2cc0506 100644
--- a/CITATION.cff
+++ b/CITATION.cff
@@ -1,23 +1,23 @@
cff-version: 1.2.0
-title: "Python"
-repository-code: https://github.com/agnwinds/python
-abstract: "A code for Monte Carlo simulation of radiative transfer & ionisation within astrophysical compact object systems."
-message: "If you use Python, please cite both the 2002 concept paper and the software release paper."
-version: 88a
-date-released: 2024-04-11
+title: "Sirocco"
+repository-code: https://github.com/sirocco-rt/sirocco
+abstract: "Simulating Ionization and Radiation in Outflows Created by Compact Objects"
+message: "If you use Sirocco, please cite both the 2002 concept paper and the software release paper."
+version: v0.1
+date-released: 2024-10-22
doi: 10.1086/342879
identifiers:
- type: doi
value: 10.1086/342879
- description: "2002 concept paper for the Python project."
+ description: "2002 concept paper for the Sirocco project."
- type: doi
value: 10.1234/567890
description: "[PLACEHOLDER] Software release paper for this software."
- type: doi
value: 10.1234/zenodo.5678
- description: "[PLACEHOLDER] The Zenodo project DOI for the Python code."
+ description: "[PLACEHOLDER] The Zenodo project DOI for the Sirocco code."
authors:
- - name: The Python collaboration
+ - name: The Sirocco collaboration
- family-names: Long
given-names: Knox
orcid: https://orcid.org/0000-0002-4134-864X
@@ -72,4 +72,4 @@ authors:
affiliation: "University of Southampton"
- family-names: Gupta
given-names: Rahul
- affiliation: "Imperial College London"
\ No newline at end of file
+ affiliation: "Imperial College London"
diff --git a/README.md b/README.md
index 08899316a..395fade9b 100644
--- a/README.md
+++ b/README.md
@@ -1,4 +1,8 @@
-# SIROCCO
+
+
+[](https://doi.org/10.5281/zenodo.13969075)
+[](https://github.com/sirocco-rt/sirocco/actions/workflows/build.yml)
+[](https://sirocco-rt.readthedocs.io/en/latest/?badge=latest)
*Sirocco* (Simulating Ionization and Radiation in Outflows Created by Compact Objects) is a Monte Carlo radiative transfer code which uses the Sobolev approximation. The code was formerly known as Python and renamed in October 2024. It has been developed by Knox Long, Christian Knigge, Stuart Sim, Nick Higginbottom, James Matthews, Sam Manghamm Edward Parkinson, Mandy Hewitt and Nico Scepi. The code has been used for a variety of research projects invovling the winds of cataclysmic variables, young stellar objects, X-ray binaries and AGN.
@@ -7,12 +11,6 @@ or James Matthews via james[dot]matthews[at]physics[dot]ox[dot]ac[dot]uk.
Documentation is hosted on [ReadTheDocs](http://sirocco-rt.readthedocs.io/en/dev/).
-## CI \& Docs Build Status
-
-[](https://github.com/sirocco-rt/sirocco/actions/workflows/build.yml)
-
-[](https://sirocco-rt.readthedocs.io/en/latest/?badge=latest)
-
## Installation
Sirocco and the various routines associated are set up in a self-contained directory structure. The basic directory structure and the data files that one needs to run Sirocco need to be retrieved and compiled.
@@ -21,7 +19,7 @@ If you want to obtain a stable (!) release, go to the [Releases](https://github.
If you want to download the latest dev version, you can zip up the git repository by clicking on the zip icon to the right of the GitHub page. Aternatively, you can clone the repository using
- $ git clone https://github.com/agnwinds/python.git
+ $ git clone https://github.com/sirocco-rt/sirocco.git
If you anticipate contributing to development we suggest forking the repository and submitting pull requests with any proposed changes.
@@ -46,16 +44,16 @@ also to download various model grids of spectra that have been used in conjuncti
These can be downloaded as follows:
- $ cd $SIROCCO; git clone https://github.com/agnwinds/xmod xmod
+ $ cd $SIROCCO; git clone https://github.com/sirocco-rt/xmod xmod
(Previously, both the atomic data and the model grids were stored in a separate repository. Users wishing
to run older versions of the code pre-84b may need to download the
[old data repository](https://github.com/sirocco-rt/data) This repository can be downloaded as follows
- $ cd $SIROCCO; git clone https://github.com/agnwinds/data data
+ $ cd $SIROCCO; git clone https://github.com/sirocco-rt/data data
-Those users interested in the current version of Python should not need to do this)
+Those users interested in the current version of Sirocco should not need to do this)
## Running Sirocco
diff --git a/docs/sphinx/requirements.txt b/docs/sphinx/requirements.txt
index 8fbcc9df9..3158573ab 100644
--- a/docs/sphinx/requirements.txt
+++ b/docs/sphinx/requirements.txt
@@ -12,4 +12,4 @@ sqlalchemy
jinja2==3.1.4
sphinx_gallery
pyhdf
-sphinx-autoapi==3.1.1
\ No newline at end of file
+sphinx-autoapi==3.1.1
diff --git a/docs/sphinx/source/atomic/bound_bound.rst b/docs/sphinx/source/atomic/bound_bound.rst
index b823b3ef6..b4089ae36 100644
--- a/docs/sphinx/source/atomic/bound_bound.rst
+++ b/docs/sphinx/source/atomic/bound_bound.rst
@@ -23,8 +23,8 @@ We have also used a line list from Verner in the past
Translation to SIROCCO format
-============================
-There are several steps to creating the data used in SIROCCO from that in gfall.dat, that are carried out by py_read_kurucz and py_link. The first routine reads the gfall.dat file and creates two output files, a file containing the lines and the associated such as the effective oscillatory strength and a file which contains information about the ion levels. py_read_kurucz chooses only a portion of the Kurucz lines, namely those associated with ions with ionization potentials in a certain range and lines with gf factors exceeding a certain value. The second program py_link attempts to create a model ion with links between the levels and the ions. Both of these routines are driven by .pf files, similar to what are used in python. Examples of the .pf files are in the directory py_kurucz
+======================================
+There are several steps to creating the data used in SIROCCO from that in gfall.dat, that are carried out by py_read_kurucz and py_link. The first routine reads the gfall.dat file and creates two output files, a file containing the lines and the associated such as the effective oscillatory strength and a file which contains information about the ion levels. py_read_kurucz chooses only a portion of the Kurucz lines, namely those associated with ions with ionization potentials in a certain range and lines with gf factors exceeding a certain value. The second program py_link attempts to create a model ion with links between the levels and the ions. Both of these routines are driven by .pf files, similar to what are used in SIROCCO. Examples of the .pf files are in the directory py_kurucz
In practice we have not used these data for any SIROCCO publications. At some point early in the AGN project, NSH increased the number of lines, and generated lines\_linked\_ver\_2.dat and levels\_ver\_2.dat. I think this was because there was a small bug which meant the oscillator strength cut that was stated was not that which was applied.
@@ -69,12 +69,12 @@ one needs to index everything self-consistentl
SIROCCO structure
-================
+================================
Line data is stored in the data structure **lines**
Comments
========
-The version of gfall.dat that is used in SIROCCO is out of date, though whether this affects any of the lines actually used in python is unclear. The website listed above has a link to newer versions of gfall.dat.
+The version of gfall.dat that is used in SIROCCO is out of date, though whether this affects any of the lines actually used in SIROCCO is unclear. The website listed above has a link to newer versions of gfall.dat.
diff --git a/docs/sphinx/source/atomic/bound_bound_electron_collision_strengths.rst b/docs/sphinx/source/atomic/bound_bound_electron_collision_strengths.rst
index 88c9da405..73448f504 100644
--- a/docs/sphinx/source/atomic/bound_bound_electron_collision_strengths.rst
+++ b/docs/sphinx/source/atomic/bound_bound_electron_collision_strengths.rst
@@ -20,7 +20,7 @@ These values of :math:`\Upsilon` simply replace :math:`\Omega`.
In the asbsence of data in this format, the Van Regemorter approximation is utilized.
Translation to SIROCCO format
-============================
+======================================
It is necessary to link each line in our line list with the relevant electron collision strength. This is achieved using the python script "coll_stren_lookup.py" which first reads in the "lines_linked_ver_2.py" line list, then attempts to work out which lines are which by comparing the energy and the oscillator strength of the line. If these match to within a factor of 10% then the code logs this as a possible match. If better matches come along, then the code adopts those instead.
@@ -67,7 +67,7 @@ and
So, to get :math:`\Upsilon` for a given T, one converts T to x via the correct equation, then linearly interpolate between values of :math:`y(x)`, then convert back to :math:`\Upsilon`.
SIROCCO structure
-================
+==========================
The data is stored in SIROCCO in the Coll\_stren structure which has memebers
diff --git a/docs/sphinx/source/atomic/bound_free_topbase.rst b/docs/sphinx/source/atomic/bound_free_topbase.rst
index 132f510cb..5f2a56ce4 100644
--- a/docs/sphinx/source/atomic/bound_free_topbase.rst
+++ b/docs/sphinx/source/atomic/bound_free_topbase.rst
@@ -9,7 +9,7 @@ Obtained from The `Opacity project `_ repository progs/extrapolate\_xs/
+The python scripts can be found in the `data-gen `_ repository progs/extrapolate\_xs/
with docstrings describing their use.
diff --git a/docs/sphinx/source/atomic/bound_free_verner.rst b/docs/sphinx/source/atomic/bound_free_verner.rst
index 1e27207fd..eac72aeeb 100644
--- a/docs/sphinx/source/atomic/bound_free_verner.rst
+++ b/docs/sphinx/source/atomic/bound_free_verner.rst
@@ -16,7 +16,7 @@ There are three sources for this data
Translation to SIROCCO format
-============================
+======================================
**Tabulation Process**
@@ -62,7 +62,7 @@ This data is linked to the relevant ion via z and state, islp and level are not
This data is linked to the relevant ion via z and state. the n_shell and l_subshell numbers are used to cross reference to the electron yield records. As above, the last record shows how many points are in the fit, and the data pairs making up the fit follow with the keyword InnerVY.
SIROCCO structure
-================
+==========================
Where the data is stored internally in SIROCCO
diff --git a/docs/sphinx/source/atomic/direct_ionization.rst b/docs/sphinx/source/atomic/direct_ionization.rst
index 950801fe8..061fd0be7 100644
--- a/docs/sphinx/source/atomic/direct_ionization.rst
+++ b/docs/sphinx/source/atomic/direct_ionization.rst
@@ -11,7 +11,7 @@ The data comes directly from `Dere 2006, A&A, 466, 771 `_ . The data is downloaded from the vizier site linked and put into a file called "electron_yield.data"
Translation to SIROCCO format
-============================
+======================================
The translation takes place using the python script "kaastra_2_py.py" which takes the saved raw data file "electron_yield.data" and compares it line by line to the inner shell cross section data in "vy_innershell_tab.data"(see above). The n shell and l subshell to which each record applies is coded in the KM data and needs to be decoded. This is what the script does, and all the script then does is output the yield data into a new file "kaastra_electron_yield.data" which contains the n and l cross reference.
@@ -36,9 +36,9 @@ The data is linked to the correct inner shell photoionization cross section (and
SIROCCO structure
-================
+==========================
-The data is stored in python in the inner_elec_yield structure which contains
+The data is stored in SIROCCO in the inner_elec_yield structure which contains
- int nion - Index to the ion which was the parent of the inner shell ionization
- int z, istate - element and ionization state of parent ion
diff --git a/docs/sphinx/source/atomic/elem_ions.rst b/docs/sphinx/source/atomic/elem_ions.rst
index f70d49268..18db3a9ab 100644
--- a/docs/sphinx/source/atomic/elem_ions.rst
+++ b/docs/sphinx/source/atomic/elem_ions.rst
@@ -10,8 +10,8 @@ This data comes from `Verner, Barthel & Tytler, 1994, ApJ 108, 287. ` |:math:`s_1`|:math:`s_2`|:math:`s_3`|
@@ -49,7 +49,7 @@ where
:math:`\Delta=\log(x)-\log(\gamma^2)`
SIROCCO structure
-================
+==========================
This data is held internally in SIROCCO in the structure **gaunt_total** which has members
- log_gsqrd
diff --git a/docs/sphinx/source/atomic/levels.rst b/docs/sphinx/source/atomic/levels.rst
index a5a2728ff..824b2a97e 100644
--- a/docs/sphinx/source/atomic/levels.rst
+++ b/docs/sphinx/source/atomic/levels.rst
@@ -13,8 +13,8 @@ Level information can be derived from a variety of sources, by:
* more commonly, for data abstracted from TopBase or Chianti
-Translation to python:
-======================
+Translation to SIROCCO:
+================================
@@ -83,7 +83,7 @@ between ions, and so it includes the ionization energy of the lower level ioniza
Note that the radiative rates are not used. The original intention was to use this to define the
difference between metastable and normal levels, with the expectation that if the level was metastable it
would be put in Boltzmann equilibrium with the ground state.
-Right now python uses :math:`10^{15}` seconds, essentially a Hubble time to do this, but this portion of the
+Right now SIROCCO uses :math:`10^{15}` seconds, essentially a Hubble time to do this, but this portion of the
code is not, according to ss, tested.
The primary source for this is usually the NIST database, although similar information is usually available in Chianti.
@@ -94,7 +94,7 @@ Since they quote J, one converts to g = 2J+1
The ionization potential is not used, as it is redundant with the excitation energy which is, and the last column giving the configuration is also for information only.
SIROCCO structure:
-=================
+===========================
This data is held in SIROCCO in various fields in structure **config**.
Comments:
diff --git a/docs/sphinx/source/atomic/photon_yields.rst b/docs/sphinx/source/atomic/photon_yields.rst
index d648ae132..99d93d558 100644
--- a/docs/sphinx/source/atomic/photon_yields.rst
+++ b/docs/sphinx/source/atomic/photon_yields.rst
@@ -9,7 +9,7 @@ Source
This data comes from `Kaastra and Mewe 1993, A&A, 97, 443 `_ . The data is downloaded from the vizier site linked and put into a file called "fluorescent\_yield.data"
Translation to SIROCCO format
-============================
+======================================
The translation takes place using the python script "kaastra_2_py.py". All identical to electron yield, but input file is "fluorescent_yield.data" and output is "kaastra_fluorescent_yield.data"
@@ -35,9 +35,9 @@ The data is linked to the correct inner shell photoionization cross section (and
SIROCCO structure
-================
+==========================
-The data is stored in python in the inner_fluor_yield structure which contains
+The data is stored in SIROCCO in the inner_fluor_yield structure which contains
- int nion - Index to the ion which was the parent of the inner shell ionization
diff --git a/docs/sphinx/source/conf.py b/docs/sphinx/source/conf.py
index 99081aedb..f868d1a13 100755
--- a/docs/sphinx/source/conf.py
+++ b/docs/sphinx/source/conf.py
@@ -87,9 +87,9 @@
# built documents.
#
# The short X.Y version.
-version = '88'
+version = '0.1'
# The full version, including alpha/beta/rc tags.
-release = '88a'
+release = '0.1'
# The language for content autogenerated by Sphinx. Refer to documentation
# for a list of supported languages.
diff --git a/docs/sphinx/source/developer/cuda.rst b/docs/sphinx/source/developer/cuda.rst
index 54681b5e8..03e9261f8 100644
--- a/docs/sphinx/source/developer/cuda.rst
+++ b/docs/sphinx/source/developer/cuda.rst
@@ -241,7 +241,7 @@ The following code exert is an example of using the wrapper function to solve a
.. code:: c
:caption: The API to solve a linear system hasn't changed
- #include "python.h"
+ #include "sirocco.h"
double *populations = malloc(nions * sizeof(*populations));
double *ion_density = malloc(nions * sizeof(*populations));
@@ -269,7 +269,7 @@ Here is an example of using a similar wrapper function to calculate the inverse
.. code:: c
:caption: The API has changed slightly for calculating the inverse, now that it has a wrapper function
- #include "python.h"
+ #include "sirocco.h"
double Q_matrix = malloc(matrix_size * matrix_size * sizeof(double));
double Q_inverse = malloc(matrix_size * matrix_size * sizeof(double));
@@ -383,7 +383,7 @@ The steps for compiling and link GPU and CPU code are outlined below in pseudo-M
$(CC) $(C_FLAGS) $(C_SOURCE) -c -o $(C_OBJECTS)
# Link the CUDA and C object code and libraries together using the C compiler
- $(CC) $(CUDA_OBJECTS) $(C_OBJECTS) -o python $(CUDA_LIBS) $(C_LIBS)
+ $(CC) $(CUDA_OBJECTS) $(C_OBJECTS) -o sirocco $(CUDA_LIBS) $(C_LIBS)
These steps are effectively replicated in the Makefile :code:`$SIROCCO/source/Makefile`, where a deconstructed example is
shown below.
@@ -409,8 +409,8 @@ shown below.
endif
# So to compile SIROCCO, we have something which looks vaguely like this. Note that
- # we use the CUDA_OBJECTS recipe as a requirement for the python recipe. This CUSOLVER_STATUS_SUCCESS
+ # we use the CUDA_OBJECTS recipe as a requirement for the sirocco recipe. This CUSOLVER_STATUS_SUCCESS
# the CUDA source to be compiled to object code *if* NVCC is defined
- python: startup python.o $(python_objects) $(CUDA_OBJECTS)
- $(CC) $(CFLAGS) python.o $(python_objects) $(CUDA_OBJECTS) $(kpar_objects) $(LDFLAGS) -o python
+ sirocco: startup sirocco.o $(sirocco_objects) $(CUDA_OBJECTS)
+ $(CC) $(CFLAGS) sirocco.o $(sirocco_objects) $(CUDA_OBJECTS) $(kpar_objects) $(LDFLAGS) -o sirocco
diff --git a/docs/sphinx/source/developer/programmer_notes.rst b/docs/sphinx/source/developer/programmer_notes.rst
index 22fefbc8b..96c053dc4 100644
--- a/docs/sphinx/source/developer/programmer_notes.rst
+++ b/docs/sphinx/source/developer/programmer_notes.rst
@@ -30,7 +30,7 @@ The main header files are:
strengths, photoionization cross-sections, elemental abundances, etc. These data are
read in at the beginning of the program (see atomicdata.c and other similarly named
routines)
-* python.h - This contains the structures and other data that comprise the wind as well
+* sirocco.h - This contains the structures and other data that comprise the wind as well
as the parameters of the model. (This is fairly well-documented, or should be)
@@ -94,7 +94,7 @@ The portions of the routine that are parallelize are:
the radiative transfer step in the detailed spectrum phase.
-MPI requires intialization. For python this is carried out in python.c. Various subroutines make
+MPI requires intialization. For SIROCCO this is carried out in sirocco.c. Various subroutines make
use of MPI, and as a result, programmers need to be aware of this fact when they write auxiliary
routines that use the various subroutines called by SIROCCO.
@@ -128,13 +128,13 @@ In the latest generations of gcc, the standards for extenral variiables have be
If one wishes to define an external variable, one must first declare it as eternal, and then one
must initialize it outside a specific routine exactly in one place.
-The standard convention is that the variables are declared as external in a header file, e.g python.h,
-and then intialized in a separate .c file, e.g python_extern_init.c. Unless, a variable is actually
+The standard convention is that the variables are declared as external in a header file, e.g sirocco.h,
+and then intialized in a separate .c file, e.g sirocco_extern_init.c. Unless, a variable is actually
initialized, no space will be allocated for the variable.
So if variables are added (or subtracted), one must make a change both in the relavant .h file.
-Currently has three.c files atomic_extern_init.c, models_extern_init.c, python_extern_init.c
-corresponding to the three main .h files, atommic.h, models.h and python.h
+Currently has three.c files atomic_extern_init.c, models_extern_init.c, sirocco_extern_init.c
+corresponding to the three main .h files, atommic.h, models.h and sirocco.h
diff --git a/docs/sphinx/source/developer/tests.rst b/docs/sphinx/source/developer/tests.rst
index aacd80168..bbdfc9738 100644
--- a/docs/sphinx/source/developer/tests.rst
+++ b/docs/sphinx/source/developer/tests.rst
@@ -151,16 +151,16 @@ implementation. If you need to create your own assertion, these should be kept i
}
-.. admonition:: Including :code:`python.h` in your tests
+.. admonition:: Including :code:`sirocco.h` in your tests
- If you need to access various structures or other things defined in :code:`python.h`, it is possible to include
+ If you need to access various structures or other things defined in :code:`sirocco.h`, it is possible to include
the header file in your test source code as in the example below (there are some data structures which depend
on values defined in :code:`atomic.h`),
.. code:: c
#include "../../atomic.h"
- #include "../../python.h"
+ #include "../../sirocco.h"
In some situations this might complicate compilation of the unit test. In those cases, it could be better to
re-define anything you need in the source file for the unit test.
diff --git a/docs/sphinx/source/images/logo.png b/docs/sphinx/source/images/logo.png
new file mode 100644
index 000000000..72c6d2ff1
Binary files /dev/null and b/docs/sphinx/source/images/logo.png differ
diff --git a/docs/sphinx/source/index.rst b/docs/sphinx/source/index.rst
index ae60aca32..12a6e4c6c 100644
--- a/docs/sphinx/source/index.rst
+++ b/docs/sphinx/source/index.rst
@@ -7,34 +7,44 @@
SIROCCO - Simulating Ionization and Radiation in Outflows Created by Compact Objects
####################################################################################
---------------------------------------
-Radiative transfer and ionisation code
---------------------------------------
+.. figure:: images/logo.png
+ :width: 300px
SIROCCO is a Monte-Carlo radiative transfer code designed to simulate the spectrum of biconical (or spherical)
-winds in disk systems. It was origianally written by
+winds in disk systems. It was formerly known as Python, and originally written by
`Long and Knigge (2002) `_ and
was intended for simulating the spectra of winds in cataclysmic variables. Since then, it has
-also been used to simulate the spectra of systems ranging from young stellar objects to AGN.
+also been used to simulate the spectra of systems ranging from young stellar objects to AGN.
+SIROCCO is named after the `Sirocco wind `_, and also
+stands for Simulating Ionization and Radiation in Outflows Created by Compact Objects.
The program is written in C and can be compiled on systems runining various flavors of linux, including macOS and the
Windows Subsystem for Linux (WSL). The code is is available on `GitHub `_. Issues
-regarding the code and suggestions for improvement should be reported there. We actively encourage other to make use of
+regarding the code and suggestions for improvement should be reported there. We actively encourage others to make use of
the code for their own science. If anyone has questions about whether the code might be useful for a project, we
encourage you to contact one of the authors of the code.
-
--------------
-Documentation
--------------
+---------------------------------------
+Documentation \& Publications
+---------------------------------------
Various documentation exists:
* A :doc:`Quick Guide ` describing how to install and run SIROCCO (in a fairly mechanistic fashion).
+* More detailed documentation on this site and in the docs/sphinx/ folder of the repository.
+* A code release paper, submitted in October 2024
+* Various PhD theses that describe the code in more detail:
+ * Higginbottom, N (2014): `Modelling accretion disk winds in quasars `_,
+ * Matthews, J. (2016): `Disc Winds Matter: Modelling Accretion And Outflow On All Scales `_,
+ * Mangham, S. (2019): `The reverberation signatures of accretion disk winds in active galactic nuclei `_,
+ * Parkinson, E. (2022): `Shining lights, even in death: modelling the optical and ultraviolet emission from tidal disruption events `_ .
For more information on how this page was generated and how to create documentation for SIROCCO,
look at the page for :doc:`documentation on the documentation `.
+`This ADS library `_ contains a list of publications using SIROCCO to date.
+
+
-------
Authors
-------
@@ -54,7 +64,7 @@ Nick Higginbottom
Department of Physics and Astronomy, University of Southampton, Southampton, SO17 1BJ, UK
James Matthews
- Institute of Astronomy, University of Cambridge, Cambridge, CB3 0HA, UK
+ Department of Physics, Astrophysics, University of Oxford, Denys Wilkinson Building, Keble Road, Oxford, OX1 3RH, UK
Sam Mangham
Department of Physics and Astronomy, University of Southampton, Southampton, SO17 1BJ, UK
diff --git a/docs/sphinx/source/input.rst b/docs/sphinx/source/input.rst
index f0afabcba..1379d7b67 100644
--- a/docs/sphinx/source/input.rst
+++ b/docs/sphinx/source/input.rst
@@ -3,7 +3,7 @@ Inputs
A comprehensive section and lists of all possible parameter inputs for various models.
-**Overview** describes how python uses keywords for a .pf parameter file and how a user can create their own parameter files.
+**Overview** describes how SIROCCO uses keywords for a .pf parameter file and how a user can create their own parameter files.
**System Description** describes the initial system parameters for a model with an example to indicate what .pf output looks like.
diff --git a/docs/sphinx/source/input/parameters/Disk/Disk.T_profile_file.rst b/docs/sphinx/source/input/parameters/Disk/Disk.T_profile_file.rst
index b04b09c28..f38374d70 100644
--- a/docs/sphinx/source/input/parameters/Disk/Disk.T_profile_file.rst
+++ b/docs/sphinx/source/input/parameters/Disk/Disk.T_profile_file.rst
@@ -8,7 +8,7 @@ Type
String
File
- `setup_disk.c `_
+ `setup_disk.c `_
Parent(s)
diff --git a/docs/sphinx/source/input/parameters/Disk/Disk.colour_correction.rst b/docs/sphinx/source/input/parameters/Disk/Disk.colour_correction.rst
index 97fc2448a..e41ed3e3a 100644
--- a/docs/sphinx/source/input/parameters/Disk/Disk.colour_correction.rst
+++ b/docs/sphinx/source/input/parameters/Disk/Disk.colour_correction.rst
@@ -11,7 +11,7 @@ Values
File
- `setup_disk.c `_
+ `setup_disk.c `_
Parent(s)
diff --git a/docs/sphinx/source/input/parameters/Disk/Disk.mdot.rst b/docs/sphinx/source/input/parameters/Disk/Disk.mdot.rst
index bc3881274..6c1e743f7 100644
--- a/docs/sphinx/source/input/parameters/Disk/Disk.mdot.rst
+++ b/docs/sphinx/source/input/parameters/Disk/Disk.mdot.rst
@@ -9,7 +9,7 @@ Unit
:math:`M_{\odot}/yr`
File
- `setup_disk.c `_
+ `setup_disk.c `_
Parent(s)
diff --git a/docs/sphinx/source/input/parameters/Disk/Disk.rad_type_in_final_spectrum.rst b/docs/sphinx/source/input/parameters/Disk/Disk.rad_type_in_final_spectrum.rst
index b6178f6a2..96ea0114e 100644
--- a/docs/sphinx/source/input/parameters/Disk/Disk.rad_type_in_final_spectrum.rst
+++ b/docs/sphinx/source/input/parameters/Disk/Disk.rad_type_in_final_spectrum.rst
@@ -17,7 +17,7 @@ Values
File
- `python.c `_
+ `sirocco.c `_
Parent(s)
diff --git a/docs/sphinx/source/input/parameters/Disk/Disk.rad_type_to_make_wind.rst b/docs/sphinx/source/input/parameters/Disk/Disk.rad_type_to_make_wind.rst
index 7cbbe477b..ebf673e97 100644
--- a/docs/sphinx/source/input/parameters/Disk/Disk.rad_type_to_make_wind.rst
+++ b/docs/sphinx/source/input/parameters/Disk/Disk.rad_type_to_make_wind.rst
@@ -17,7 +17,7 @@ Values
File
- `setup_disk.c `_
+ `setup_disk.c `_
Parent(s)
diff --git a/docs/sphinx/source/input/parameters/Disk/Disk.radiation.rst b/docs/sphinx/source/input/parameters/Disk/Disk.radiation.rst
index e0a659de5..aa7d76a2c 100644
--- a/docs/sphinx/source/input/parameters/Disk/Disk.radiation.rst
+++ b/docs/sphinx/source/input/parameters/Disk/Disk.radiation.rst
@@ -6,7 +6,7 @@ Type
Boolean(yes/no)
File
- `setup_disk.c `_
+ `setup_disk.c `_
Parent(s)
diff --git a/docs/sphinx/source/input/parameters/Disk/Disk.radmax.rst b/docs/sphinx/source/input/parameters/Disk/Disk.radmax.rst
index bf41115aa..6e76cc749 100644
--- a/docs/sphinx/source/input/parameters/Disk/Disk.radmax.rst
+++ b/docs/sphinx/source/input/parameters/Disk/Disk.radmax.rst
@@ -14,7 +14,7 @@ Values
Greater than 0
File
- `setup_disk.c `_
+ `setup_disk.c `_
Parent(s)
diff --git a/docs/sphinx/source/input/parameters/Disk/Disk.radmin.rst b/docs/sphinx/source/input/parameters/Disk/Disk.radmin.rst
index 1da159051..af4eec170 100644
--- a/docs/sphinx/source/input/parameters/Disk/Disk.radmin.rst
+++ b/docs/sphinx/source/input/parameters/Disk/Disk.radmin.rst
@@ -13,7 +13,7 @@ Values
Equal to or greater than :ref:`Central_object.radius`.
File
- `setup_disk.c `_
+ `setup_disk.c `_
Parent(s)
* :ref:`Disk.type`: :code:`rmin>central.obj.rad`
diff --git a/docs/sphinx/source/input/parameters/Disk/Disk.temperature.profile.rst b/docs/sphinx/source/input/parameters/Disk/Disk.temperature.profile.rst
index 5abe9f3a0..e5728ec21 100644
--- a/docs/sphinx/source/input/parameters/Disk/Disk.temperature.profile.rst
+++ b/docs/sphinx/source/input/parameters/Disk/Disk.temperature.profile.rst
@@ -14,7 +14,7 @@ Values
File
- `setup_disk.c `_
+ `setup_disk.c `_
Parent(s)
diff --git a/docs/sphinx/source/input/parameters/Disk/Disk.type.rst b/docs/sphinx/source/input/parameters/Disk/Disk.type.rst
index 14a02c767..3b983623d 100644
--- a/docs/sphinx/source/input/parameters/Disk/Disk.type.rst
+++ b/docs/sphinx/source/input/parameters/Disk/Disk.type.rst
@@ -17,7 +17,7 @@ Values
File
- `setup_disk.c `_
+ `setup_disk.c `_
Child(ren)
diff --git a/docs/sphinx/source/input/parameters/Disk/Disk.z0.rst b/docs/sphinx/source/input/parameters/Disk/Disk.z0.rst
index 7118e76b2..b74fe4dab 100644
--- a/docs/sphinx/source/input/parameters/Disk/Disk.z0.rst
+++ b/docs/sphinx/source/input/parameters/Disk/Disk.z0.rst
@@ -10,7 +10,7 @@ Values
Greater than 0
File
- `setup_disk.c `_
+ `setup_disk.c `_
Parent(s)
diff --git a/docs/sphinx/source/input/parameters/Disk/Disk.z1.rst b/docs/sphinx/source/input/parameters/Disk/Disk.z1.rst
index 098e8fb31..41f798e75 100644
--- a/docs/sphinx/source/input/parameters/Disk/Disk.z1.rst
+++ b/docs/sphinx/source/input/parameters/Disk/Disk.z1.rst
@@ -11,7 +11,7 @@ Values
Greater than 0
File
- `setup_disk.c `_
+ `setup_disk.c `_
Parent(s)
diff --git a/docs/sphinx/source/input/parameters/Input_spectra.model_file.rst b/docs/sphinx/source/input/parameters/Input_spectra.model_file.rst
index 0ad9dbe77..32391d51d 100644
--- a/docs/sphinx/source/input/parameters/Input_spectra.model_file.rst
+++ b/docs/sphinx/source/input/parameters/Input_spectra.model_file.rst
@@ -12,7 +12,7 @@ Type
String
File
- `setup.c `_
+ `setup.c `_
Parent(s)
diff --git a/docs/sphinx/source/input/parameters/Spectrum/Spectrum.angle.rst b/docs/sphinx/source/input/parameters/Spectrum/Spectrum.angle.rst
index fcc69f74c..c618d6696 100644
--- a/docs/sphinx/source/input/parameters/Spectrum/Spectrum.angle.rst
+++ b/docs/sphinx/source/input/parameters/Spectrum/Spectrum.angle.rst
@@ -14,7 +14,7 @@ Values
0 to 90 degrees, where 0 is normal to the disk and 90 is on the disk plane
File
- `setup.c `_
+ `setup.c `_
Parent(s)
diff --git a/docs/sphinx/source/input/parameters/Spectrum/Spectrum.live_or_die.rst b/docs/sphinx/source/input/parameters/Spectrum/Spectrum.live_or_die.rst
index 0ebc3336b..59ca24207 100644
--- a/docs/sphinx/source/input/parameters/Spectrum/Spectrum.live_or_die.rst
+++ b/docs/sphinx/source/input/parameters/Spectrum/Spectrum.live_or_die.rst
@@ -24,7 +24,7 @@ Values
File
- `setup.c `_
+ `setup.c `_
Parent(s)
diff --git a/docs/sphinx/source/input/parameters/Spectrum/Spectrum.no_observers.rst b/docs/sphinx/source/input/parameters/Spectrum/Spectrum.no_observers.rst
index 3378aa925..855ee3d07 100644
--- a/docs/sphinx/source/input/parameters/Spectrum/Spectrum.no_observers.rst
+++ b/docs/sphinx/source/input/parameters/Spectrum/Spectrum.no_observers.rst
@@ -10,7 +10,7 @@ Values
Greater than 0
File
- `setup.c `_
+ `setup.c `_
Parent(s)
diff --git a/docs/sphinx/source/input/parameters/Spectrum/Spectrum.nwave.rst b/docs/sphinx/source/input/parameters/Spectrum/Spectrum.nwave.rst
index adaa79d69..56adfb268 100644
--- a/docs/sphinx/source/input/parameters/Spectrum/Spectrum.nwave.rst
+++ b/docs/sphinx/source/input/parameters/Spectrum/Spectrum.nwave.rst
@@ -10,7 +10,7 @@ Values
Greater than 100
File
- `setup.c `_
+ `setup.c `_
Parent(s)
* :ref:`Spectrum_cycles`: Greater than or equal to 0
diff --git a/docs/sphinx/source/input/parameters/Spectrum/Spectrum.orbit_phase.rst b/docs/sphinx/source/input/parameters/Spectrum/Spectrum.orbit_phase.rst
index 285b6f727..462237e33 100644
--- a/docs/sphinx/source/input/parameters/Spectrum/Spectrum.orbit_phase.rst
+++ b/docs/sphinx/source/input/parameters/Spectrum/Spectrum.orbit_phase.rst
@@ -14,7 +14,7 @@ Values
Between 0 and 1
File
- `setup.c `_
+ `setup.c `_
Parent(s)
diff --git a/docs/sphinx/source/input/parameters/Spectrum/Spectrum.select_azimuth.rst b/docs/sphinx/source/input/parameters/Spectrum/Spectrum.select_azimuth.rst
index 6bab58bb8..e02507cb9 100644
--- a/docs/sphinx/source/input/parameters/Spectrum/Spectrum.select_azimuth.rst
+++ b/docs/sphinx/source/input/parameters/Spectrum/Spectrum.select_azimuth.rst
@@ -16,7 +16,7 @@ Values
Between 0, and 360 or -180 to 180
File
- `setup.c `_
+ `setup.c `_
Parent(s)
diff --git a/docs/sphinx/source/input/parameters/Spectrum/Spectrum.select_location.rst b/docs/sphinx/source/input/parameters/Spectrum/Spectrum.select_location.rst
index 0fbb6adb1..d77a77fb0 100644
--- a/docs/sphinx/source/input/parameters/Spectrum/Spectrum.select_location.rst
+++ b/docs/sphinx/source/input/parameters/Spectrum/Spectrum.select_location.rst
@@ -23,7 +23,7 @@ Values
File
- `setup.c `_
+ `setup.c `_
Parent(s)
diff --git a/docs/sphinx/source/input/parameters/Spectrum/Spectrum.select_photons_by_position.rst b/docs/sphinx/source/input/parameters/Spectrum/Spectrum.select_photons_by_position.rst
index ac8f9c979..9a9a0ee9f 100644
--- a/docs/sphinx/source/input/parameters/Spectrum/Spectrum.select_photons_by_position.rst
+++ b/docs/sphinx/source/input/parameters/Spectrum/Spectrum.select_photons_by_position.rst
@@ -19,7 +19,7 @@ Type
Boolean (yes/no)
File
- `setup.c `_
+ `setup.c `_
Parent(s)
diff --git a/docs/sphinx/source/input/parameters/Spectrum/Spectrum.select_r.rst b/docs/sphinx/source/input/parameters/Spectrum/Spectrum.select_r.rst
index 66b5b4707..c65da704f 100644
--- a/docs/sphinx/source/input/parameters/Spectrum/Spectrum.select_r.rst
+++ b/docs/sphinx/source/input/parameters/Spectrum/Spectrum.select_r.rst
@@ -13,7 +13,7 @@ Values
Greater than 0
File
- `setup.c `_
+ `setup.c `_
Parent(s)
diff --git a/docs/sphinx/source/input/parameters/Spectrum/Spectrum.select_rho.rst b/docs/sphinx/source/input/parameters/Spectrum/Spectrum.select_rho.rst
index 1f6be0e85..38da5b0f0 100644
--- a/docs/sphinx/source/input/parameters/Spectrum/Spectrum.select_rho.rst
+++ b/docs/sphinx/source/input/parameters/Spectrum/Spectrum.select_rho.rst
@@ -16,7 +16,7 @@ Values
Condition e.g. greater than 0 or list e.g. [1, 2, 5]
File
- `setup.c `_
+ `setup.c `_
Parent(s)
diff --git a/docs/sphinx/source/input/parameters/Spectrum/Spectrum.select_scatters.rst b/docs/sphinx/source/input/parameters/Spectrum/Spectrum.select_scatters.rst
index 896b2094c..548042e21 100644
--- a/docs/sphinx/source/input/parameters/Spectrum/Spectrum.select_scatters.rst
+++ b/docs/sphinx/source/input/parameters/Spectrum/Spectrum.select_scatters.rst
@@ -29,7 +29,7 @@ Values
Greater than 0
File
- `setup.c `_
+ `setup.c `_
Parent(s)
diff --git a/docs/sphinx/source/input/parameters/Spectrum/Spectrum.select_specific_no_of_scatters_in_spectra.rst b/docs/sphinx/source/input/parameters/Spectrum/Spectrum.select_specific_no_of_scatters_in_spectra.rst
index d548bcef6..09c2b8c99 100644
--- a/docs/sphinx/source/input/parameters/Spectrum/Spectrum.select_specific_no_of_scatters_in_spectra.rst
+++ b/docs/sphinx/source/input/parameters/Spectrum/Spectrum.select_specific_no_of_scatters_in_spectra.rst
@@ -15,7 +15,7 @@ Type
Boolean (yes/no)
File
- `setup.c `_
+ `setup.c `_
Parent(s)
diff --git a/docs/sphinx/source/input/parameters/Spectrum/Spectrum.select_z.rst b/docs/sphinx/source/input/parameters/Spectrum/Spectrum.select_z.rst
index d178e35a0..332e13b0d 100644
--- a/docs/sphinx/source/input/parameters/Spectrum/Spectrum.select_z.rst
+++ b/docs/sphinx/source/input/parameters/Spectrum/Spectrum.select_z.rst
@@ -16,7 +16,7 @@ Values
Within the z range of the model
File
- `setup.c `_
+ `setup.c `_
Parent(s)
diff --git a/docs/sphinx/source/input/parameters/Spectrum/Spectrum.type.rst b/docs/sphinx/source/input/parameters/Spectrum/Spectrum.type.rst
index a1c07446e..84446890e 100644
--- a/docs/sphinx/source/input/parameters/Spectrum/Spectrum.type.rst
+++ b/docs/sphinx/source/input/parameters/Spectrum/Spectrum.type.rst
@@ -19,7 +19,7 @@ Values
File
- `setup.c `_
+ `setup.c `_
Parent(s)
diff --git a/docs/sphinx/source/input/parameters/Spectrum/Spectrum.wavemax.rst b/docs/sphinx/source/input/parameters/Spectrum/Spectrum.wavemax.rst
index 548f9e70b..c709041ba 100644
--- a/docs/sphinx/source/input/parameters/Spectrum/Spectrum.wavemax.rst
+++ b/docs/sphinx/source/input/parameters/Spectrum/Spectrum.wavemax.rst
@@ -13,7 +13,7 @@ Values
File
- `setup.c `_
+ `setup.c `_
Parent(s)
diff --git a/docs/sphinx/source/input/parameters/Spectrum/Spectrum.wavemin.rst b/docs/sphinx/source/input/parameters/Spectrum/Spectrum.wavemin.rst
index 639df15e1..23b5f7a35 100644
--- a/docs/sphinx/source/input/parameters/Spectrum/Spectrum.wavemin.rst
+++ b/docs/sphinx/source/input/parameters/Spectrum/Spectrum.wavemin.rst
@@ -12,7 +12,7 @@ Values
Greater than 0
File
- `setup.c `_
+ `setup.c `_
Parent(s)
diff --git a/docs/sphinx/source/input/parameters/System_type.rst b/docs/sphinx/source/input/parameters/System_type.rst
index bd8ad47a2..3f78b917c 100644
--- a/docs/sphinx/source/input/parameters/System_type.rst
+++ b/docs/sphinx/source/input/parameters/System_type.rst
@@ -20,12 +20,12 @@ Values
A system in which the central object is a supermassive black hole.
previous
- In this case, the user is starting from a previous python run. The user can either continue the
+ In this case, the user is starting from a previous SIROCCO run. The user can either continue the
run or change some parameters associated with radiation sources.
File
- `python.c `_
+ `sirocco.c `_
Child(ren)
diff --git a/docs/sphinx/source/input/parameters/central_object/Binary/Binary.mass_sec.rst b/docs/sphinx/source/input/parameters/central_object/Binary/Binary.mass_sec.rst
index de82a967f..888975352 100644
--- a/docs/sphinx/source/input/parameters/central_object/Binary/Binary.mass_sec.rst
+++ b/docs/sphinx/source/input/parameters/central_object/Binary/Binary.mass_sec.rst
@@ -14,7 +14,7 @@ Values
Greater than 0
File
- `setup_star_bh.c `_
+ `setup_star_bh.c `_
Parent(s)
diff --git a/docs/sphinx/source/input/parameters/central_object/Binary/Binary.period.rst b/docs/sphinx/source/input/parameters/central_object/Binary/Binary.period.rst
index d714d708d..01b287d0e 100644
--- a/docs/sphinx/source/input/parameters/central_object/Binary/Binary.period.rst
+++ b/docs/sphinx/source/input/parameters/central_object/Binary/Binary.period.rst
@@ -14,7 +14,7 @@ Values
Greater than 0
File
- `setup_star_bh.c `_
+ `setup_star_bh.c `_
Parent(s)
diff --git a/docs/sphinx/source/input/parameters/central_object/Boundary_layer/Boundary_layer.luminosity.rst b/docs/sphinx/source/input/parameters/central_object/Boundary_layer/Boundary_layer.luminosity.rst
index 51911e9e4..0717bd34e 100644
--- a/docs/sphinx/source/input/parameters/central_object/Boundary_layer/Boundary_layer.luminosity.rst
+++ b/docs/sphinx/source/input/parameters/central_object/Boundary_layer/Boundary_layer.luminosity.rst
@@ -12,7 +12,7 @@ Values
Greater than 0
File
- `setup_star_bh.c `_
+ `setup_star_bh.c `_
Parent(s)
diff --git a/docs/sphinx/source/input/parameters/central_object/Boundary_layer/Boundary_layer.power_law_cutoff.rst b/docs/sphinx/source/input/parameters/central_object/Boundary_layer/Boundary_layer.power_law_cutoff.rst
index 54d058ef7..53b13e239 100644
--- a/docs/sphinx/source/input/parameters/central_object/Boundary_layer/Boundary_layer.power_law_cutoff.rst
+++ b/docs/sphinx/source/input/parameters/central_object/Boundary_layer/Boundary_layer.power_law_cutoff.rst
@@ -14,7 +14,7 @@ Values
Greater than 0
File
- `setup_star_bh.c `_
+ `setup_star_bh.c `_
Parent(s)
diff --git a/docs/sphinx/source/input/parameters/central_object/Boundary_layer/Boundary_layer.power_law_index.rst b/docs/sphinx/source/input/parameters/central_object/Boundary_layer/Boundary_layer.power_law_index.rst
index 4b69d3dbc..2c74db322 100644
--- a/docs/sphinx/source/input/parameters/central_object/Boundary_layer/Boundary_layer.power_law_index.rst
+++ b/docs/sphinx/source/input/parameters/central_object/Boundary_layer/Boundary_layer.power_law_index.rst
@@ -10,7 +10,7 @@ Values
Any - must use negative (-) sign for negative indexes.
File
- `setup_star_bh.c `_
+ `setup_star_bh.c `_
Parent(s)
diff --git a/docs/sphinx/source/input/parameters/central_object/Boundary_layer/Boundary_layer.rad_type_in_final_spectrum.rst b/docs/sphinx/source/input/parameters/central_object/Boundary_layer/Boundary_layer.rad_type_in_final_spectrum.rst
index f3c94492b..d85125113 100644
--- a/docs/sphinx/source/input/parameters/central_object/Boundary_layer/Boundary_layer.rad_type_in_final_spectrum.rst
+++ b/docs/sphinx/source/input/parameters/central_object/Boundary_layer/Boundary_layer.rad_type_in_final_spectrum.rst
@@ -27,7 +27,7 @@ Values
File
- `python.c `_
+ `sirocco.c `_
Parent(s)
diff --git a/docs/sphinx/source/input/parameters/central_object/Boundary_layer/Boundary_layer.rad_type_to_make_wind.rst b/docs/sphinx/source/input/parameters/central_object/Boundary_layer/Boundary_layer.rad_type_to_make_wind.rst
index 23d2068a9..d9efd250c 100644
--- a/docs/sphinx/source/input/parameters/central_object/Boundary_layer/Boundary_layer.rad_type_to_make_wind.rst
+++ b/docs/sphinx/source/input/parameters/central_object/Boundary_layer/Boundary_layer.rad_type_to_make_wind.rst
@@ -24,7 +24,7 @@ Values
File
- `setup_star_bh.c `_
+ `setup_star_bh.c `_
Parent(s)
diff --git a/docs/sphinx/source/input/parameters/central_object/Boundary_layer/Boundary_layer.radiation.rst b/docs/sphinx/source/input/parameters/central_object/Boundary_layer/Boundary_layer.radiation.rst
index 6f812b756..8b73f683f 100644
--- a/docs/sphinx/source/input/parameters/central_object/Boundary_layer/Boundary_layer.radiation.rst
+++ b/docs/sphinx/source/input/parameters/central_object/Boundary_layer/Boundary_layer.radiation.rst
@@ -6,7 +6,7 @@ Type
Boolean (yes/no)
File
- `setup_star_bh.c `_
+ `setup_star_bh.c `_
Parent(s)
diff --git a/docs/sphinx/source/input/parameters/central_object/Boundary_layer/Boundary_layer.temp.rst b/docs/sphinx/source/input/parameters/central_object/Boundary_layer/Boundary_layer.temp.rst
index e81b13605..38a88a91b 100644
--- a/docs/sphinx/source/input/parameters/central_object/Boundary_layer/Boundary_layer.temp.rst
+++ b/docs/sphinx/source/input/parameters/central_object/Boundary_layer/Boundary_layer.temp.rst
@@ -12,7 +12,7 @@ Values
Greater than 0
File
- `setup.c `_
+ `setup.c `_
Parent(s)
diff --git a/docs/sphinx/source/input/parameters/central_object/Central_object/Central_object.blackbody_temp.rst b/docs/sphinx/source/input/parameters/central_object/Central_object/Central_object.blackbody_temp.rst
index c6683ea8d..de42230d1 100644
--- a/docs/sphinx/source/input/parameters/central_object/Central_object/Central_object.blackbody_temp.rst
+++ b/docs/sphinx/source/input/parameters/central_object/Central_object/Central_object.blackbody_temp.rst
@@ -13,7 +13,7 @@ Values
Greater than 0
File
- `setup_star_bh.c `_
+ `setup_star_bh.c `_
Parent(s)
diff --git a/docs/sphinx/source/input/parameters/central_object/Central_object/Central_object.bremsstrahlung_alpha.rst b/docs/sphinx/source/input/parameters/central_object/Central_object/Central_object.bremsstrahlung_alpha.rst
index 6c80b6169..8322a90c1 100644
--- a/docs/sphinx/source/input/parameters/central_object/Central_object/Central_object.bremsstrahlung_alpha.rst
+++ b/docs/sphinx/source/input/parameters/central_object/Central_object/Central_object.bremsstrahlung_alpha.rst
@@ -11,7 +11,7 @@ Values
Any - must use negative (-) sign for negative values.
File
- `setup_star_bh.c `_
+ `setup_star_bh.c `_
Parent(s)
diff --git a/docs/sphinx/source/input/parameters/central_object/Central_object/Central_object.bremsstrahlung_temp.rst b/docs/sphinx/source/input/parameters/central_object/Central_object/Central_object.bremsstrahlung_temp.rst
index b60a0a11e..c393b6168 100644
--- a/docs/sphinx/source/input/parameters/central_object/Central_object/Central_object.bremsstrahlung_temp.rst
+++ b/docs/sphinx/source/input/parameters/central_object/Central_object/Central_object.bremsstrahlung_temp.rst
@@ -14,7 +14,7 @@ Values
Greater than 0
File
- `setup_star_bh.c `_
+ `setup_star_bh.c `_
Parent(s)
diff --git a/docs/sphinx/source/input/parameters/central_object/Central_object/Central_object.bubble_size.rst b/docs/sphinx/source/input/parameters/central_object/Central_object/Central_object.bubble_size.rst
index 46ae13a5c..0f8f6d4ed 100644
--- a/docs/sphinx/source/input/parameters/central_object/Central_object/Central_object.bubble_size.rst
+++ b/docs/sphinx/source/input/parameters/central_object/Central_object/Central_object.bubble_size.rst
@@ -13,7 +13,7 @@ Values
Greater than 0
File
- `setup_star_bh.c `_
+ `setup_star_bh.c `_
Parent(s)
* :ref:`Central_object.geometry_for_source`: ``bubble``
diff --git a/docs/sphinx/source/input/parameters/central_object/Central_object/Central_object.cloudy.high_energy_break.rst b/docs/sphinx/source/input/parameters/central_object/Central_object/Central_object.cloudy.high_energy_break.rst
index e33bb6a48..4efe46b02 100644
--- a/docs/sphinx/source/input/parameters/central_object/Central_object/Central_object.cloudy.high_energy_break.rst
+++ b/docs/sphinx/source/input/parameters/central_object/Central_object/Central_object.cloudy.high_energy_break.rst
@@ -16,7 +16,7 @@ Values
Greater than :ref:`Central_object.cloudy.low_energy_break`
File
- `setup_star_bh.c `_
+ `setup_star_bh.c `_
Parent(s)
diff --git a/docs/sphinx/source/input/parameters/central_object/Central_object/Central_object.cloudy.low_energy_break.rst b/docs/sphinx/source/input/parameters/central_object/Central_object/Central_object.cloudy.low_energy_break.rst
index 26208b19a..36367fd6d 100644
--- a/docs/sphinx/source/input/parameters/central_object/Central_object/Central_object.cloudy.low_energy_break.rst
+++ b/docs/sphinx/source/input/parameters/central_object/Central_object/Central_object.cloudy.low_energy_break.rst
@@ -16,7 +16,7 @@ Values
Greater than 0
File
- `setup_star_bh.c `_
+ `setup_star_bh.c `_
Parent(s)
diff --git a/docs/sphinx/source/input/parameters/central_object/Central_object/Central_object.geometry_for_source.rst b/docs/sphinx/source/input/parameters/central_object/Central_object/Central_object.geometry_for_source.rst
index 4223448b9..dfcc31a07 100644
--- a/docs/sphinx/source/input/parameters/central_object/Central_object/Central_object.geometry_for_source.rst
+++ b/docs/sphinx/source/input/parameters/central_object/Central_object/Central_object.geometry_for_source.rst
@@ -24,7 +24,7 @@ Values
This model generates isotropic photons.
File
- `setup_star_bh.c `_
+ `setup_star_bh.c `_
Parent(s)
diff --git a/docs/sphinx/source/input/parameters/central_object/Central_object/Central_object.lamp_post_height.rst b/docs/sphinx/source/input/parameters/central_object/Central_object/Central_object.lamp_post_height.rst
index 3d284b08b..71f7048c1 100644
--- a/docs/sphinx/source/input/parameters/central_object/Central_object/Central_object.lamp_post_height.rst
+++ b/docs/sphinx/source/input/parameters/central_object/Central_object/Central_object.lamp_post_height.rst
@@ -13,7 +13,7 @@ Values
Greater than 0
File
- `setup_star_bh.c `_
+ `setup_star_bh.c `_
Parent(s)
diff --git a/docs/sphinx/source/input/parameters/central_object/Central_object/Central_object.luminosity.rst b/docs/sphinx/source/input/parameters/central_object/Central_object/Central_object.luminosity.rst
index 0d62c3de2..ffd74b525 100644
--- a/docs/sphinx/source/input/parameters/central_object/Central_object/Central_object.luminosity.rst
+++ b/docs/sphinx/source/input/parameters/central_object/Central_object/Central_object.luminosity.rst
@@ -13,7 +13,7 @@ Values
Greater than 0.
File
- `setup_star_bh.c `_
+ `setup_star_bh.c `_
Parent(s)
diff --git a/docs/sphinx/source/input/parameters/central_object/Central_object/Central_object.mass.rst b/docs/sphinx/source/input/parameters/central_object/Central_object/Central_object.mass.rst
index 5960840db..b1e2df32a 100644
--- a/docs/sphinx/source/input/parameters/central_object/Central_object/Central_object.mass.rst
+++ b/docs/sphinx/source/input/parameters/central_object/Central_object/Central_object.mass.rst
@@ -13,6 +13,6 @@ Values
Greater than 0
File
- `setup_star_bh.c `_
+ `setup_star_bh.c `_
diff --git a/docs/sphinx/source/input/parameters/central_object/Central_object/Central_object.power_law_cutoff.rst b/docs/sphinx/source/input/parameters/central_object/Central_object/Central_object.power_law_cutoff.rst
index fbd336085..1d5a510da 100644
--- a/docs/sphinx/source/input/parameters/central_object/Central_object/Central_object.power_law_cutoff.rst
+++ b/docs/sphinx/source/input/parameters/central_object/Central_object/Central_object.power_law_cutoff.rst
@@ -14,7 +14,7 @@ Values
Greater than or equal to 0
File
- `setup_star_bh.c `_
+ `setup_star_bh.c `_
Parent(s)
diff --git a/docs/sphinx/source/input/parameters/central_object/Central_object/Central_object.power_law_index.rst b/docs/sphinx/source/input/parameters/central_object/Central_object/Central_object.power_law_index.rst
index 14a1b1db0..6dafc2dcc 100644
--- a/docs/sphinx/source/input/parameters/central_object/Central_object/Central_object.power_law_index.rst
+++ b/docs/sphinx/source/input/parameters/central_object/Central_object/Central_object.power_law_index.rst
@@ -10,7 +10,7 @@ Values
Greater than 0
File
- `setup_star_bh.c `_
+ `setup_star_bh.c `_
Parent(s)
diff --git a/docs/sphinx/source/input/parameters/central_object/Central_object/Central_object.rad_type_in_final_spectrum.rst b/docs/sphinx/source/input/parameters/central_object/Central_object/Central_object.rad_type_in_final_spectrum.rst
index 5066717dc..a4d2ebb9b 100644
--- a/docs/sphinx/source/input/parameters/central_object/Central_object/Central_object.rad_type_in_final_spectrum.rst
+++ b/docs/sphinx/source/input/parameters/central_object/Central_object/Central_object.rad_type_in_final_spectrum.rst
@@ -45,7 +45,7 @@ Values
File
- `python.c `_
+ `sirocco.c `_
Parent(s)
diff --git a/docs/sphinx/source/input/parameters/central_object/Central_object/Central_object.rad_type_to_make_wind.rst b/docs/sphinx/source/input/parameters/central_object/Central_object/Central_object.rad_type_to_make_wind.rst
index dc690bc39..12fed7f6b 100644
--- a/docs/sphinx/source/input/parameters/central_object/Central_object/Central_object.rad_type_to_make_wind.rst
+++ b/docs/sphinx/source/input/parameters/central_object/Central_object/Central_object.rad_type_to_make_wind.rst
@@ -36,7 +36,7 @@ Values
File
- `setup_star_bh.c `_
+ `setup_star_bh.c `_
Parent(s)
diff --git a/docs/sphinx/source/input/parameters/central_object/Central_object/Central_object.radiation.rst b/docs/sphinx/source/input/parameters/central_object/Central_object/Central_object.radiation.rst
index c77a9a3c1..eb210a25d 100644
--- a/docs/sphinx/source/input/parameters/central_object/Central_object/Central_object.radiation.rst
+++ b/docs/sphinx/source/input/parameters/central_object/Central_object/Central_object.radiation.rst
@@ -7,7 +7,7 @@ Type
Boolean (yes/no)
File
- `setup_star_bh.c `_
+ `setup_star_bh.c `_
Child(ren)
diff --git a/docs/sphinx/source/input/parameters/central_object/Central_object/Central_object.radius.rst b/docs/sphinx/source/input/parameters/central_object/Central_object/Central_object.radius.rst
index 64209c0bc..4fa08bbe5 100644
--- a/docs/sphinx/source/input/parameters/central_object/Central_object/Central_object.radius.rst
+++ b/docs/sphinx/source/input/parameters/central_object/Central_object/Central_object.radius.rst
@@ -14,6 +14,6 @@ Values
Greater than 0
File
- `setup_star_bh.c `_
+ `setup_star_bh.c `_
diff --git a/docs/sphinx/source/input/parameters/central_object/Central_object/Central_object.temp.rst b/docs/sphinx/source/input/parameters/central_object/Central_object/Central_object.temp.rst
index abcb7d743..123aa93b9 100644
--- a/docs/sphinx/source/input/parameters/central_object/Central_object/Central_object.temp.rst
+++ b/docs/sphinx/source/input/parameters/central_object/Central_object/Central_object.temp.rst
@@ -13,7 +13,7 @@ Values
Greater than zero
File
- `setup_star_bh.c `_
+ `setup_star_bh.c `_
Parent(s)
diff --git a/docs/sphinx/source/input/parameters/other/Diag/Diag.adjust_grid.rst b/docs/sphinx/source/input/parameters/other/Diag/Diag.adjust_grid.rst
index 91ef46be7..874123cd8 100644
--- a/docs/sphinx/source/input/parameters/other/Diag/Diag.adjust_grid.rst
+++ b/docs/sphinx/source/input/parameters/other/Diag/Diag.adjust_grid.rst
@@ -7,7 +7,7 @@ Type
Boolean (yes/no)
File
- `setup_domains.c `_
+ `setup_domains.c `_
Parent(s)
diff --git a/docs/sphinx/source/input/parameters/other/Diag/Diag.angle.rst b/docs/sphinx/source/input/parameters/other/Diag/Diag.angle.rst
index 8b35c6405..c918a84d4 100644
--- a/docs/sphinx/source/input/parameters/other/Diag/Diag.angle.rst
+++ b/docs/sphinx/source/input/parameters/other/Diag/Diag.angle.rst
@@ -13,7 +13,7 @@ Values
Greater than 0
File
- `diag.c `_
+ `diag.c `_
Parent(s)
diff --git a/docs/sphinx/source/input/parameters/other/Diag/Diag.extra.rst b/docs/sphinx/source/input/parameters/other/Diag/Diag.extra.rst
index 303800b47..a98d5c0c6 100644
--- a/docs/sphinx/source/input/parameters/other/Diag/Diag.extra.rst
+++ b/docs/sphinx/source/input/parameters/other/Diag/Diag.extra.rst
@@ -9,7 +9,7 @@ Type
Boolean (yes/no)
File
- `python.c `_
+ `sirocco.c `_
Child(ren)
diff --git a/docs/sphinx/source/input/parameters/other/Diag/Diag.fractional_distance_photon_may_travel.rst b/docs/sphinx/source/input/parameters/other/Diag/Diag.fractional_distance_photon_may_travel.rst
index dca6bbfda..6a5deb775 100644
--- a/docs/sphinx/source/input/parameters/other/Diag/Diag.fractional_distance_photon_may_travel.rst
+++ b/docs/sphinx/source/input/parameters/other/Diag/Diag.fractional_distance_photon_may_travel.rst
@@ -13,7 +13,7 @@ Values
0 to 1
File
- `diag.c `_
+ `diag.c `_
Parent(s)
diff --git a/docs/sphinx/source/input/parameters/other/Diag/Diag.invoke_searchlight_option.rst b/docs/sphinx/source/input/parameters/other/Diag/Diag.invoke_searchlight_option.rst
index daee7b02a..729965e29 100644
--- a/docs/sphinx/source/input/parameters/other/Diag/Diag.invoke_searchlight_option.rst
+++ b/docs/sphinx/source/input/parameters/other/Diag/Diag.invoke_searchlight_option.rst
@@ -8,7 +8,7 @@ Type
Boolean (yes/no)
File
- `diag.c `_
+ `diag.c `_
Parent(s)
diff --git a/docs/sphinx/source/input/parameters/other/Diag/Diag.keep_ioncycle_spectra.rst b/docs/sphinx/source/input/parameters/other/Diag/Diag.keep_ioncycle_spectra.rst
index f3ec5a6a9..742bd9106 100644
--- a/docs/sphinx/source/input/parameters/other/Diag/Diag.keep_ioncycle_spectra.rst
+++ b/docs/sphinx/source/input/parameters/other/Diag/Diag.keep_ioncycle_spectra.rst
@@ -3,14 +3,14 @@ Diag.keep_ioncycle_spectra
Decide whether or not to keep a copy of the log_spec_tot file after
each spectral cycle in order to track the changes as the
-code converges. Produces files of format python01.log_spec_tot and so
+code converges. Produces files of format sirocco01.log_spec_tot and so
on (02,03...) for subsequent cycles.
Type
Boolean(yes/no)
File
- `diag.c `_
+ `diag.c `_
Parent(s)
diff --git a/docs/sphinx/source/input/parameters/other/Diag/Diag.keep_ioncycle_windsaves.rst b/docs/sphinx/source/input/parameters/other/Diag/Diag.keep_ioncycle_windsaves.rst
index 7274288ab..8110fe1f1 100644
--- a/docs/sphinx/source/input/parameters/other/Diag/Diag.keep_ioncycle_windsaves.rst
+++ b/docs/sphinx/source/input/parameters/other/Diag/Diag.keep_ioncycle_windsaves.rst
@@ -2,14 +2,14 @@ Diag.keep_ioncycle_windsaves
============================
Decide whether or not to keep a copy of the windsave file after
each ionization cycle in order to track the changes as the
-code converges. Produces files of format python01.wind_save and so
+code converges. Produces files of format sirocco01.wind_save and so
on (02,03...) for subsequent cycles.
Type
Boolean(yes/no)
File
- `diag.c `_
+ `diag.c `_
Parent(s)
diff --git a/docs/sphinx/source/input/parameters/other/Diag/Diag.keep_photoabs_in_final_spectra.rst b/docs/sphinx/source/input/parameters/other/Diag/Diag.keep_photoabs_in_final_spectra.rst
index 98af3012a..031ec5e0a 100644
--- a/docs/sphinx/source/input/parameters/other/Diag/Diag.keep_photoabs_in_final_spectra.rst
+++ b/docs/sphinx/source/input/parameters/other/Diag/Diag.keep_photoabs_in_final_spectra.rst
@@ -7,7 +7,7 @@ Type
Boolean (yes/no)
File
- `diag.c `_
+ `diag.c `_
Parent(s)
diff --git a/docs/sphinx/source/input/parameters/other/Diag/Diag.location.rst b/docs/sphinx/source/input/parameters/other/Diag/Diag.location.rst
index 01a9a8934..dfbefe4e9 100644
--- a/docs/sphinx/source/input/parameters/other/Diag/Diag.location.rst
+++ b/docs/sphinx/source/input/parameters/other/Diag/Diag.location.rst
@@ -15,7 +15,7 @@ Values
The searchlight originates at a user determined location and angle along the disk.
File
- `diag.c `_
+ `diag.c `_
Parent(s)
diff --git a/docs/sphinx/source/input/parameters/other/Diag/Diag.lowest_ion_density_for_photoabs.rst b/docs/sphinx/source/input/parameters/other/Diag/Diag.lowest_ion_density_for_photoabs.rst
index 92a93afa6..9cade9cfd 100644
--- a/docs/sphinx/source/input/parameters/other/Diag/Diag.lowest_ion_density_for_photoabs.rst
+++ b/docs/sphinx/source/input/parameters/other/Diag/Diag.lowest_ion_density_for_photoabs.rst
@@ -14,7 +14,7 @@ Values
Greater than 0
File
- `diag.c `_
+ `diag.c `_
Parent(s)
diff --git a/docs/sphinx/source/input/parameters/other/Diag/Diag.make_ioncycle_tables.rst b/docs/sphinx/source/input/parameters/other/Diag/Diag.make_ioncycle_tables.rst
index 7e8f2fc25..94745945c 100644
--- a/docs/sphinx/source/input/parameters/other/Diag/Diag.make_ioncycle_tables.rst
+++ b/docs/sphinx/source/input/parameters/other/Diag/Diag.make_ioncycle_tables.rst
@@ -6,7 +6,7 @@ Type
Boolean (yes/no)
File
- `diag.c `_
+ `diag.c `_
Parent(s)
diff --git a/docs/sphinx/source/input/parameters/other/Diag/Diag.print_dvds_info.rst b/docs/sphinx/source/input/parameters/other/Diag/Diag.print_dvds_info.rst
index 068d0bd1e..1b1d677a6 100644
--- a/docs/sphinx/source/input/parameters/other/Diag/Diag.print_dvds_info.rst
+++ b/docs/sphinx/source/input/parameters/other/Diag/Diag.print_dvds_info.rst
@@ -7,7 +7,7 @@ Type
Boolean (yes/no)
File
- `diag.c `_
+ `diag.c `_
Parent(s)
diff --git a/docs/sphinx/source/input/parameters/other/Diag/Diag.r.rst b/docs/sphinx/source/input/parameters/other/Diag/Diag.r.rst
index 027a3fdf7..a84427e03 100644
--- a/docs/sphinx/source/input/parameters/other/Diag/Diag.r.rst
+++ b/docs/sphinx/source/input/parameters/other/Diag/Diag.r.rst
@@ -13,7 +13,7 @@ Values
Greater than 0
File
- `diag.c `_
+ `diag.c `_
Parent(s)
* :ref:`Diag.extra`: :code:`yes`
diff --git a/docs/sphinx/source/input/parameters/other/Diag/Diag.save_cell_statistics.rst b/docs/sphinx/source/input/parameters/other/Diag/Diag.save_cell_statistics.rst
index cec798138..82b0dc73b 100644
--- a/docs/sphinx/source/input/parameters/other/Diag/Diag.save_cell_statistics.rst
+++ b/docs/sphinx/source/input/parameters/other/Diag/Diag.save_cell_statistics.rst
@@ -9,7 +9,7 @@ Type
Boolean (yes/no)
File
- `diag.c `_
+ `diag.c `_
Parent(s)
diff --git a/docs/sphinx/source/input/parameters/other/Diag/Diag.save_extract_photons.rst b/docs/sphinx/source/input/parameters/other/Diag/Diag.save_extract_photons.rst
index 5d588c20f..62b98323d 100644
--- a/docs/sphinx/source/input/parameters/other/Diag/Diag.save_extract_photons.rst
+++ b/docs/sphinx/source/input/parameters/other/Diag/Diag.save_extract_photons.rst
@@ -35,7 +35,7 @@ Type
Boolean (yes/no)
File
- `diag.c `_
+ `diag.c `_
Parent(s)
diff --git a/docs/sphinx/source/input/parameters/other/Diag/Diag.save_photons.rst b/docs/sphinx/source/input/parameters/other/Diag/Diag.save_photons.rst
index 6d32d7b5a..e466967ea 100644
--- a/docs/sphinx/source/input/parameters/other/Diag/Diag.save_photons.rst
+++ b/docs/sphinx/source/input/parameters/other/Diag/Diag.save_photons.rst
@@ -34,7 +34,7 @@ Type
Boolean (yes/no)
File
- `diag.c `_
+ `diag.c `_
Parent(s)
diff --git a/docs/sphinx/source/input/parameters/other/Diag/Diag.track_resonant_scatters.rst b/docs/sphinx/source/input/parameters/other/Diag/Diag.track_resonant_scatters.rst
index 23827774d..1f7c607f4 100644
--- a/docs/sphinx/source/input/parameters/other/Diag/Diag.track_resonant_scatters.rst
+++ b/docs/sphinx/source/input/parameters/other/Diag/Diag.track_resonant_scatters.rst
@@ -24,7 +24,7 @@ Type
Boolean (yes/no)
File
- `diag.c `_
+ `diag.c `_
Parent(s)
diff --git a/docs/sphinx/source/input/parameters/other/Diag/Diag.use_jumps_for_emissivities_in_detailed_spectra.rst b/docs/sphinx/source/input/parameters/other/Diag/Diag.use_jumps_for_emissivities_in_detailed_spectra.rst
index d4b43a093..3c11cd88c 100644
--- a/docs/sphinx/source/input/parameters/other/Diag/Diag.use_jumps_for_emissivities_in_detailed_spectra.rst
+++ b/docs/sphinx/source/input/parameters/other/Diag/Diag.use_jumps_for_emissivities_in_detailed_spectra.rst
@@ -9,7 +9,7 @@ Type
Boolean (yes/no)
File
- `diag.c `_
+ `diag.c `_
Parent(s)
diff --git a/docs/sphinx/source/input/parameters/other/Diag/Diag.use_standard_care_factors.rst b/docs/sphinx/source/input/parameters/other/Diag/Diag.use_standard_care_factors.rst
index 514c1bb33..be3870c94 100644
--- a/docs/sphinx/source/input/parameters/other/Diag/Diag.use_standard_care_factors.rst
+++ b/docs/sphinx/source/input/parameters/other/Diag/Diag.use_standard_care_factors.rst
@@ -9,7 +9,7 @@ Type
Boolean (yes/no)
File
- `diag.c `_
+ `diag.c `_
Child(ren)
diff --git a/docs/sphinx/source/input/parameters/other/Diag/Diag.use_upweighting_of_simple_macro_atoms.rst b/docs/sphinx/source/input/parameters/other/Diag/Diag.use_upweighting_of_simple_macro_atoms.rst
index 86f64dba3..e91f3b903 100644
--- a/docs/sphinx/source/input/parameters/other/Diag/Diag.use_upweighting_of_simple_macro_atoms.rst
+++ b/docs/sphinx/source/input/parameters/other/Diag/Diag.use_upweighting_of_simple_macro_atoms.rst
@@ -16,7 +16,7 @@ Type
Boolean (yes/no)
File
- `diag.c `_
+ `diag.c `_
Parent(s)
* :ref:`Diag.extra`: ``True``
diff --git a/docs/sphinx/source/input/parameters/other/Diag/Diag.write_atomicdata.rst b/docs/sphinx/source/input/parameters/other/Diag/Diag.write_atomicdata.rst
index 0863953b2..eb9ddba59 100644
--- a/docs/sphinx/source/input/parameters/other/Diag/Diag.write_atomicdata.rst
+++ b/docs/sphinx/source/input/parameters/other/Diag/Diag.write_atomicdata.rst
@@ -7,6 +7,6 @@ Type
Boolean (yes/no)
File
- `setup_domains.c `_
+ `setup_domains.c `_
diff --git a/docs/sphinx/source/input/parameters/other/Photon_sampling/Photon_sampling.approach.rst b/docs/sphinx/source/input/parameters/other/Photon_sampling/Photon_sampling.approach.rst
index ea4b58448..e161c7700 100644
--- a/docs/sphinx/source/input/parameters/other/Photon_sampling/Photon_sampling.approach.rst
+++ b/docs/sphinx/source/input/parameters/other/Photon_sampling/Photon_sampling.approach.rst
@@ -37,7 +37,7 @@ Values
File
- `bands.c `_
+ `bands.c `_
Child(ren)
diff --git a/docs/sphinx/source/input/parameters/other/Photon_sampling/Photon_sampling.band_boundary.rst b/docs/sphinx/source/input/parameters/other/Photon_sampling/Photon_sampling.band_boundary.rst
index f3898459b..749f5d5fc 100644
--- a/docs/sphinx/source/input/parameters/other/Photon_sampling/Photon_sampling.band_boundary.rst
+++ b/docs/sphinx/source/input/parameters/other/Photon_sampling/Photon_sampling.band_boundary.rst
@@ -14,7 +14,7 @@ Values
Greater than 0, monotonically increasing
File
- `bands.c `_
+ `bands.c `_
Parent(s)
diff --git a/docs/sphinx/source/input/parameters/other/Photon_sampling/Photon_sampling.band_min_frac.rst b/docs/sphinx/source/input/parameters/other/Photon_sampling/Photon_sampling.band_min_frac.rst
index 10b773903..90e069891 100644
--- a/docs/sphinx/source/input/parameters/other/Photon_sampling/Photon_sampling.band_min_frac.rst
+++ b/docs/sphinx/source/input/parameters/other/Photon_sampling/Photon_sampling.band_min_frac.rst
@@ -13,7 +13,7 @@ Values
Greater than 0 and should sum to less than 1 over all bands
File
- `bands.c `_
+ `bands.c `_
Parent(s)
diff --git a/docs/sphinx/source/input/parameters/other/Photon_sampling/Photon_sampling.high_energy_limit.rst b/docs/sphinx/source/input/parameters/other/Photon_sampling/Photon_sampling.high_energy_limit.rst
index 7a31f1a6e..4d246651e 100644
--- a/docs/sphinx/source/input/parameters/other/Photon_sampling/Photon_sampling.high_energy_limit.rst
+++ b/docs/sphinx/source/input/parameters/other/Photon_sampling/Photon_sampling.high_energy_limit.rst
@@ -13,7 +13,7 @@ Values
Greater than :ref:`Photon_sampling.low_energy_limit`
File
- `bands.c `_
+ `bands.c `_
Parent(s)
diff --git a/docs/sphinx/source/input/parameters/other/Photon_sampling/Photon_sampling.low_energy_limit.rst b/docs/sphinx/source/input/parameters/other/Photon_sampling/Photon_sampling.low_energy_limit.rst
index 269c97bf7..d26c0af54 100644
--- a/docs/sphinx/source/input/parameters/other/Photon_sampling/Photon_sampling.low_energy_limit.rst
+++ b/docs/sphinx/source/input/parameters/other/Photon_sampling/Photon_sampling.low_energy_limit.rst
@@ -14,7 +14,7 @@ Values
Greater than 0
File
- `bands.c `_
+ `bands.c `_
Parent(s)
diff --git a/docs/sphinx/source/input/parameters/other/Photon_sampling/Photon_sampling.nbands.rst b/docs/sphinx/source/input/parameters/other/Photon_sampling/Photon_sampling.nbands.rst
index 1af323989..22273a905 100644
--- a/docs/sphinx/source/input/parameters/other/Photon_sampling/Photon_sampling.nbands.rst
+++ b/docs/sphinx/source/input/parameters/other/Photon_sampling/Photon_sampling.nbands.rst
@@ -11,7 +11,7 @@ Values
Greater than 0
File
- `bands.c `_
+ `bands.c `_
Parent(s)
diff --git a/docs/sphinx/source/input/parameters/other/Reverb/Reverb.angle_bins.rst b/docs/sphinx/source/input/parameters/other/Reverb/Reverb.angle_bins.rst
index 7d4273e8e..ce9099c92 100644
--- a/docs/sphinx/source/input/parameters/other/Reverb/Reverb.angle_bins.rst
+++ b/docs/sphinx/source/input/parameters/other/Reverb/Reverb.angle_bins.rst
@@ -11,7 +11,7 @@ Values
Greater than 0
File
- `setup_reverb.c `_
+ `setup_reverb.c `_
Parent(s)
diff --git a/docs/sphinx/source/input/parameters/other/Reverb/Reverb.disk_type.rst b/docs/sphinx/source/input/parameters/other/Reverb/Reverb.disk_type.rst
index cb0b8892c..47c555139 100644
--- a/docs/sphinx/source/input/parameters/other/Reverb/Reverb.disk_type.rst
+++ b/docs/sphinx/source/input/parameters/other/Reverb/Reverb.disk_type.rst
@@ -34,7 +34,7 @@ Values
File
- `setup_reverb.c `_
+ `setup_reverb.c `_
Parent(s)
diff --git a/docs/sphinx/source/input/parameters/other/Reverb/Reverb.dump_cell.rst b/docs/sphinx/source/input/parameters/other/Reverb/Reverb.dump_cell.rst
index f306414b9..234709917 100644
--- a/docs/sphinx/source/input/parameters/other/Reverb/Reverb.dump_cell.rst
+++ b/docs/sphinx/source/input/parameters/other/Reverb/Reverb.dump_cell.rst
@@ -18,7 +18,7 @@ Values
File
- `setup_reverb.c `_
+ `setup_reverb.c `_
Parent(s)
diff --git a/docs/sphinx/source/input/parameters/other/Reverb/Reverb.dump_cells.rst b/docs/sphinx/source/input/parameters/other/Reverb/Reverb.dump_cells.rst
index 4ab164a46..931789614 100644
--- a/docs/sphinx/source/input/parameters/other/Reverb/Reverb.dump_cells.rst
+++ b/docs/sphinx/source/input/parameters/other/Reverb/Reverb.dump_cells.rst
@@ -11,7 +11,7 @@ Values
Greater than or equal to 0
File
- `setup_reverb.c `_
+ `setup_reverb.c `_
Parent(s)
diff --git a/docs/sphinx/source/input/parameters/other/Reverb/Reverb.filter_line.rst b/docs/sphinx/source/input/parameters/other/Reverb/Reverb.filter_line.rst
index e6ebc0897..f2010bd04 100644
--- a/docs/sphinx/source/input/parameters/other/Reverb/Reverb.filter_line.rst
+++ b/docs/sphinx/source/input/parameters/other/Reverb/Reverb.filter_line.rst
@@ -1,7 +1,7 @@
Reverb.filter_line
==================
Line number of one line to include in the output ``.delay_dump`` file. This is
-the python internal line number. It can be found using either the macro-atom
+the sirocco internal line number. It can be found using either the macro-atom
mode (which prints out the line number once it's found one) or by doing an
exploratory run with :ref:`reverb.filter_lines` = -1, then looking through the delay
dump file for photons of the right wavelength to see what their line is. This
@@ -18,7 +18,7 @@ Values
Any valid line index
File
- `setup_reverb.c `_
+ `setup_reverb.c `_
Parent(s)
diff --git a/docs/sphinx/source/input/parameters/other/Reverb/Reverb.filter_lines.rst b/docs/sphinx/source/input/parameters/other/Reverb/Reverb.filter_lines.rst
index feb2f6c57..ffc31edca 100644
--- a/docs/sphinx/source/input/parameters/other/Reverb/Reverb.filter_lines.rst
+++ b/docs/sphinx/source/input/parameters/other/Reverb/Reverb.filter_lines.rst
@@ -29,7 +29,7 @@ Values
File
- `setup_reverb.c `_
+ `setup_reverb.c `_
Parent(s)
diff --git a/docs/sphinx/source/input/parameters/other/Reverb/Reverb.matom_line.rst b/docs/sphinx/source/input/parameters/other/Reverb/Reverb.matom_line.rst
index 9cc2bb0f9..fa80e5677 100644
--- a/docs/sphinx/source/input/parameters/other/Reverb/Reverb.matom_line.rst
+++ b/docs/sphinx/source/input/parameters/other/Reverb/Reverb.matom_line.rst
@@ -14,7 +14,7 @@ Values
File
- `setup_reverb.c `_
+ `setup_reverb.c `_
Parent(s)
diff --git a/docs/sphinx/source/input/parameters/other/Reverb/Reverb.matom_lines.rst b/docs/sphinx/source/input/parameters/other/Reverb/Reverb.matom_lines.rst
index 2c3730fde..89fdfc167 100644
--- a/docs/sphinx/source/input/parameters/other/Reverb/Reverb.matom_lines.rst
+++ b/docs/sphinx/source/input/parameters/other/Reverb/Reverb.matom_lines.rst
@@ -13,7 +13,7 @@ Values
Greater than or equal to 0
File
- `setup_reverb.c `_
+ `setup_reverb.c `_
Parent(s)
diff --git a/docs/sphinx/source/input/parameters/other/Reverb/Reverb.path_bins.rst b/docs/sphinx/source/input/parameters/other/Reverb/Reverb.path_bins.rst
index 0812c170f..d90a868e5 100644
--- a/docs/sphinx/source/input/parameters/other/Reverb/Reverb.path_bins.rst
+++ b/docs/sphinx/source/input/parameters/other/Reverb/Reverb.path_bins.rst
@@ -15,7 +15,7 @@ Values
Greater than 0
File
- `setup_reverb.c `_
+ `setup_reverb.c `_
Parent(s)
diff --git a/docs/sphinx/source/input/parameters/other/Reverb/Reverb.type.rst b/docs/sphinx/source/input/parameters/other/Reverb/Reverb.type.rst
index 1728e1da2..356700b6d 100644
--- a/docs/sphinx/source/input/parameters/other/Reverb/Reverb.type.rst
+++ b/docs/sphinx/source/input/parameters/other/Reverb/Reverb.type.rst
@@ -41,7 +41,7 @@ Values
File
- `setup_reverb.c `_
+ `setup_reverb.c `_
Child(ren)
diff --git a/docs/sphinx/source/input/parameters/other/Reverb/Reverb.visualisation.rst b/docs/sphinx/source/input/parameters/other/Reverb/Reverb.visualisation.rst
index f90be3126..76d3ae058 100644
--- a/docs/sphinx/source/input/parameters/other/Reverb/Reverb.visualisation.rst
+++ b/docs/sphinx/source/input/parameters/other/Reverb/Reverb.visualisation.rst
@@ -26,7 +26,7 @@ Values
File
- `setup_reverb.c `_
+ `setup_reverb.c `_
Parent(s)
diff --git a/docs/sphinx/source/input/parameters/other/geo/geo.xlog_scale.rst b/docs/sphinx/source/input/parameters/other/geo/geo.xlog_scale.rst
index f29ac63d0..b1230502f 100644
--- a/docs/sphinx/source/input/parameters/other/geo/geo.xlog_scale.rst
+++ b/docs/sphinx/source/input/parameters/other/geo/geo.xlog_scale.rst
@@ -9,7 +9,7 @@ Unit
cm
File
- `setup_domains.c `_
+ `setup_domains.c `_
Parent(s)
diff --git a/docs/sphinx/source/input/parameters/other/geo/geo.zlog_scale.rst b/docs/sphinx/source/input/parameters/other/geo/geo.zlog_scale.rst
index 93bc92647..f1c16e24e 100644
--- a/docs/sphinx/source/input/parameters/other/geo/geo.zlog_scale.rst
+++ b/docs/sphinx/source/input/parameters/other/geo/geo.zlog_scale.rst
@@ -9,7 +9,7 @@ Unit
cm
File
- `setup_domains.c `_
+ `setup_domains.c `_
Parent(s)
diff --git a/docs/sphinx/source/input/parameters/other/monochromatic/monochromatic.wavelength.rst b/docs/sphinx/source/input/parameters/other/monochromatic/monochromatic.wavelength.rst
index b16226205..7dcb38c60 100644
--- a/docs/sphinx/source/input/parameters/other/monochromatic/monochromatic.wavelength.rst
+++ b/docs/sphinx/source/input/parameters/other/monochromatic/monochromatic.wavelength.rst
@@ -12,7 +12,7 @@ Values
Greater than 0
File
- `setup.c `_
+ `setup.c `_
Parent(s)
:ref:`Central_object.rad_type_in_final_spectrum`: :code:`mono`
diff --git a/docs/sphinx/source/input/parameters/rt_ion/Atomic_data.rst b/docs/sphinx/source/input/parameters/rt_ion/Atomic_data.rst
index 16c98c809..009e27970 100644
--- a/docs/sphinx/source/input/parameters/rt_ion/Atomic_data.rst
+++ b/docs/sphinx/source/input/parameters/rt_ion/Atomic_data.rst
@@ -7,7 +7,7 @@ Type
String
File
- `setup_line_transfer.c `_
+ `setup_line_transfer.c `_
Parent(s)
diff --git a/docs/sphinx/source/input/parameters/rt_ion/Ionization_cycles.rst b/docs/sphinx/source/input/parameters/rt_ion/Ionization_cycles.rst
index 5ff5cc6be..9cb50b6e5 100644
--- a/docs/sphinx/source/input/parameters/rt_ion/Ionization_cycles.rst
+++ b/docs/sphinx/source/input/parameters/rt_ion/Ionization_cycles.rst
@@ -10,6 +10,6 @@ Values
Greater than 0
File
- `setup.c `_
+ `setup.c `_
diff --git a/docs/sphinx/source/input/parameters/rt_ion/Line_transfer.rst b/docs/sphinx/source/input/parameters/rt_ion/Line_transfer.rst
index 18cb94085..6d0504c9e 100644
--- a/docs/sphinx/source/input/parameters/rt_ion/Line_transfer.rst
+++ b/docs/sphinx/source/input/parameters/rt_ion/Line_transfer.rst
@@ -60,7 +60,7 @@ Values
File
- `setup_line_transfer.c `_
+ `setup_line_transfer.c `_
Child(ren)
diff --git a/docs/sphinx/source/input/parameters/rt_ion/Matom_transition_mode.rst b/docs/sphinx/source/input/parameters/rt_ion/Matom_transition_mode.rst
index 1ddd69995..a5b2266b5 100644
--- a/docs/sphinx/source/input/parameters/rt_ion/Matom_transition_mode.rst
+++ b/docs/sphinx/source/input/parameters/rt_ion/Matom_transition_mode.rst
@@ -15,7 +15,7 @@ Values
correspond to transitions that generate k-packets. Transitions between levels of the macro atom via collisions with the thermal pool correspond to internal transitions of the absorbing state machine. The advantage of an absorbing state machine is that the new r-packet is not generated probabilistically but through several matrix inversions. All of the macro atoms and the thermal pool are treated simultaneously.
File
- `setup_line_transfer.c `_
+ `setup_line_transfer.c `_
Parent(s)
* :ref:`Line_transfer`
diff --git a/docs/sphinx/source/input/parameters/rt_ion/Photons_per_cycle.rst b/docs/sphinx/source/input/parameters/rt_ion/Photons_per_cycle.rst
index 3570bc2b2..4bd19697c 100644
--- a/docs/sphinx/source/input/parameters/rt_ion/Photons_per_cycle.rst
+++ b/docs/sphinx/source/input/parameters/rt_ion/Photons_per_cycle.rst
@@ -9,6 +9,6 @@ Values
Greater than 0
File
- `setup.c `_
+ `setup.c `_
diff --git a/docs/sphinx/source/input/parameters/rt_ion/Spectrum_cycles.rst b/docs/sphinx/source/input/parameters/rt_ion/Spectrum_cycles.rst
index a289f62c2..e34ff8d59 100644
--- a/docs/sphinx/source/input/parameters/rt_ion/Spectrum_cycles.rst
+++ b/docs/sphinx/source/input/parameters/rt_ion/Spectrum_cycles.rst
@@ -14,7 +14,7 @@ Type
Integer
File
- `setup.c `_
+ `setup.c `_
Child(ren)
diff --git a/docs/sphinx/source/input/parameters/rt_ion/Surface.reflection.or.absorption.rst b/docs/sphinx/source/input/parameters/rt_ion/Surface.reflection.or.absorption.rst
index dff5cd61a..744eddfc9 100644
--- a/docs/sphinx/source/input/parameters/rt_ion/Surface.reflection.or.absorption.rst
+++ b/docs/sphinx/source/input/parameters/rt_ion/Surface.reflection.or.absorption.rst
@@ -17,6 +17,6 @@ Values
File
- `setup.c `_
+ `setup.c `_
diff --git a/docs/sphinx/source/input/parameters/rt_ion/Wind_heating/Wind_heating.extra_luminosity.rst b/docs/sphinx/source/input/parameters/rt_ion/Wind_heating/Wind_heating.extra_luminosity.rst
index f10e2b704..58cd30916 100644
--- a/docs/sphinx/source/input/parameters/rt_ion/Wind_heating/Wind_heating.extra_luminosity.rst
+++ b/docs/sphinx/source/input/parameters/rt_ion/Wind_heating/Wind_heating.extra_luminosity.rst
@@ -1,7 +1,7 @@
Wind_heating.extra_luminosity
=============================
-This options allows the user to determine the shock factor. The shock heating is defined initally as a luminosity to be added to wind but is immediately converted to a luminosity per unit volume. Since nearly all systems that we are dealing with have a star, we initialize the amount of extra heating as a fraction of the stellar luminosity. See `cooling.c `_ :code:`shock_heating`.
+This options allows the user to determine the shock factor. The shock heating is defined initally as a luminosity to be added to wind but is immediately converted to a luminosity per unit volume. Since nearly all systems that we are dealing with have a star, we initialize the amount of extra heating as a fraction of the stellar luminosity. See `cooling.c `_ :code:`shock_heating`.
This is a very special option put in place for modelling FU Ori stars, and should be used with extreme caution.
The default value is calculated as a function of the star's radius and temperature.
@@ -16,7 +16,7 @@ Values
Greater than 0
File
- `setup.c `_
+ `setup.c `_
Parent(s)
diff --git a/docs/sphinx/source/input/parameters/rt_ion/Wind_heating/Wind_heating.extra_processes.rst b/docs/sphinx/source/input/parameters/rt_ion/Wind_heating/Wind_heating.extra_processes.rst
index 2d4e41e1a..9f0e0a355 100644
--- a/docs/sphinx/source/input/parameters/rt_ion/Wind_heating/Wind_heating.extra_processes.rst
+++ b/docs/sphinx/source/input/parameters/rt_ion/Wind_heating/Wind_heating.extra_processes.rst
@@ -16,7 +16,7 @@ Values
nonthermal
This is a very special option put in place for modelling FU Ori stars, and should be used with extreme caution.
- This mode enables shock heating into the thermal balance of the wind. The shock heating is defined initally as a luminosity to be added to wind but is immediately converted to a luminosity per unit volume (:ref:`Wind_heating.extra_luminosity`). Since nearly all systems that we are dealing with have a star, we initialize the amount of extra heating as a fraction of the stellar luminosity. See `cooling.c `_ :code:`shock_heating`.
+ This mode enables shock heating into the thermal balance of the wind. The shock heating is defined initally as a luminosity to be added to wind but is immediately converted to a luminosity per unit volume (:ref:`Wind_heating.extra_luminosity`). Since nearly all systems that we are dealing with have a star, we initialize the amount of extra heating as a fraction of the stellar luminosity. See `cooling.c `_ :code:`shock_heating`.
both
This is a very special option put in place for modelling FU Ori stars, and should be used with extreme caution.
@@ -25,7 +25,7 @@ Values
File
- `setup.c `_
+ `setup.c `_
Child(ren)
diff --git a/docs/sphinx/source/input/parameters/rt_ion/Wind_heating/Wind_heating.kpacket_frac.rst b/docs/sphinx/source/input/parameters/rt_ion/Wind_heating/Wind_heating.kpacket_frac.rst
index d41eb2ce7..252a9d158 100644
--- a/docs/sphinx/source/input/parameters/rt_ion/Wind_heating/Wind_heating.kpacket_frac.rst
+++ b/docs/sphinx/source/input/parameters/rt_ion/Wind_heating/Wind_heating.kpacket_frac.rst
@@ -12,7 +12,7 @@ Values
Greater than 0
File
- `setup.c `_
+ `setup.c `_
Parent(s)
diff --git a/docs/sphinx/source/input/parameters/wind/Corona/Corona.base_den.rst b/docs/sphinx/source/input/parameters/wind/Corona/Corona.base_den.rst
index c8fefa4e5..2daea6b52 100644
--- a/docs/sphinx/source/input/parameters/wind/Corona/Corona.base_den.rst
+++ b/docs/sphinx/source/input/parameters/wind/Corona/Corona.base_den.rst
@@ -12,7 +12,7 @@ Values
Greater than 0
File
- `corona.c `_
+ `corona.c `_
Parent(s)
diff --git a/docs/sphinx/source/input/parameters/wind/Corona/Corona.radmax.rst b/docs/sphinx/source/input/parameters/wind/Corona/Corona.radmax.rst
index c309bb850..bccf5b79a 100644
--- a/docs/sphinx/source/input/parameters/wind/Corona/Corona.radmax.rst
+++ b/docs/sphinx/source/input/parameters/wind/Corona/Corona.radmax.rst
@@ -13,7 +13,7 @@ Values
Greater than :ref:`Central_object.radius`
File
- `corona.c `_
+ `corona.c `_
Parent(s)
diff --git a/docs/sphinx/source/input/parameters/wind/Corona/Corona.radmin.rst b/docs/sphinx/source/input/parameters/wind/Corona/Corona.radmin.rst
index c52974bfa..5949f824c 100644
--- a/docs/sphinx/source/input/parameters/wind/Corona/Corona.radmin.rst
+++ b/docs/sphinx/source/input/parameters/wind/Corona/Corona.radmin.rst
@@ -13,7 +13,7 @@ Values
Greater than :ref:`Central_object.radius`
File
- `corona.c `_
+ `corona.c `_
Parent(s)
diff --git a/docs/sphinx/source/input/parameters/wind/Corona/Corona.scale_height.rst b/docs/sphinx/source/input/parameters/wind/Corona/Corona.scale_height.rst
index ec3840452..bdcb1fdc3 100644
--- a/docs/sphinx/source/input/parameters/wind/Corona/Corona.scale_height.rst
+++ b/docs/sphinx/source/input/parameters/wind/Corona/Corona.scale_height.rst
@@ -13,7 +13,7 @@ Values
Greater than 0
File
- `corona.c `_
+ `corona.c `_
Parent(s)
diff --git a/docs/sphinx/source/input/parameters/wind/Corona/Corona.vel_frac.rst b/docs/sphinx/source/input/parameters/wind/Corona/Corona.vel_frac.rst
index 4a3522995..067539a2d 100644
--- a/docs/sphinx/source/input/parameters/wind/Corona/Corona.vel_frac.rst
+++ b/docs/sphinx/source/input/parameters/wind/Corona/Corona.vel_frac.rst
@@ -17,7 +17,7 @@ Values
Any, 0 implies no radial velocity.
File
- `corona.c `_
+ `corona.c `_
Parent(s)
diff --git a/docs/sphinx/source/input/parameters/wind/Corona/Corona.zmax.rst b/docs/sphinx/source/input/parameters/wind/Corona/Corona.zmax.rst
index 775a26433..1e390655e 100644
--- a/docs/sphinx/source/input/parameters/wind/Corona/Corona.zmax.rst
+++ b/docs/sphinx/source/input/parameters/wind/Corona/Corona.zmax.rst
@@ -14,7 +14,7 @@ Values
Greater than that the radius of the central object
File
- `corona.c `_
+ `corona.c `_
Parent(s)
diff --git a/docs/sphinx/source/input/parameters/wind/Homologous/Homologous.boundary_mdot.rst b/docs/sphinx/source/input/parameters/wind/Homologous/Homologous.boundary_mdot.rst
index a8c1b44d6..1a2a8d40e 100644
--- a/docs/sphinx/source/input/parameters/wind/Homologous/Homologous.boundary_mdot.rst
+++ b/docs/sphinx/source/input/parameters/wind/Homologous/Homologous.boundary_mdot.rst
@@ -15,7 +15,7 @@ Values
Greater than 0
File
- `homologous.c `_
+ `homologous.c `_
Parent(s)
diff --git a/docs/sphinx/source/input/parameters/wind/Homologous/Homologous.density_exponent.rst b/docs/sphinx/source/input/parameters/wind/Homologous/Homologous.density_exponent.rst
index 1159605df..45794aa43 100644
--- a/docs/sphinx/source/input/parameters/wind/Homologous/Homologous.density_exponent.rst
+++ b/docs/sphinx/source/input/parameters/wind/Homologous/Homologous.density_exponent.rst
@@ -10,7 +10,7 @@ Values
Greater than 0 for a density that declines with radius
File
- `homologous.c `_
+ `homologous.c `_
Parent(s)
diff --git a/docs/sphinx/source/input/parameters/wind/Homologous/Homologous.radmax.rst b/docs/sphinx/source/input/parameters/wind/Homologous/Homologous.radmax.rst
index 927900d32..4b6b701e0 100644
--- a/docs/sphinx/source/input/parameters/wind/Homologous/Homologous.radmax.rst
+++ b/docs/sphinx/source/input/parameters/wind/Homologous/Homologous.radmax.rst
@@ -14,7 +14,7 @@ Values
Greater than :ref:`Homologous.radmin`
File
- `homologous.c `_
+ `homologous.c `_
Parent(s)
diff --git a/docs/sphinx/source/input/parameters/wind/Homologous/Homologous.radmin.rst b/docs/sphinx/source/input/parameters/wind/Homologous/Homologous.radmin.rst
index 5394a186b..780f975e0 100644
--- a/docs/sphinx/source/input/parameters/wind/Homologous/Homologous.radmin.rst
+++ b/docs/sphinx/source/input/parameters/wind/Homologous/Homologous.radmin.rst
@@ -14,7 +14,7 @@ Values
Greater than or equal to :ref:`Central_object.radius`
File
- `homologous.c `_
+ `homologous.c `_
Parent(s)
diff --git a/docs/sphinx/source/input/parameters/wind/Homologous/Homologous.vbase.rst b/docs/sphinx/source/input/parameters/wind/Homologous/Homologous.vbase.rst
index cfdce11b6..c7aec0425 100644
--- a/docs/sphinx/source/input/parameters/wind/Homologous/Homologous.vbase.rst
+++ b/docs/sphinx/source/input/parameters/wind/Homologous/Homologous.vbase.rst
@@ -13,7 +13,7 @@ Values
Greater than 0
File
- `homologous.c `_
+ `homologous.c `_
Parent(s)
diff --git a/docs/sphinx/source/input/parameters/wind/Hydro/Hydro.file.rst b/docs/sphinx/source/input/parameters/wind/Hydro/Hydro.file.rst
index 4ec613508..0c3e1d965 100644
--- a/docs/sphinx/source/input/parameters/wind/Hydro/Hydro.file.rst
+++ b/docs/sphinx/source/input/parameters/wind/Hydro/Hydro.file.rst
@@ -6,7 +6,7 @@ Type
String
File
- `hydro_import.c `_
+ `hydro_import.c `_
Parent(s)
diff --git a/docs/sphinx/source/input/parameters/wind/Hydro/Hydro.thetamax.rst b/docs/sphinx/source/input/parameters/wind/Hydro/Hydro.thetamax.rst
index 86ecdf768..7017aa96f 100644
--- a/docs/sphinx/source/input/parameters/wind/Hydro/Hydro.thetamax.rst
+++ b/docs/sphinx/source/input/parameters/wind/Hydro/Hydro.thetamax.rst
@@ -20,7 +20,7 @@ Values
File
- `hydro_import.c `_
+ `hydro_import.c `_
Parent(s)
diff --git a/docs/sphinx/source/input/parameters/wind/KWD/KWD.acceleration_exponent.rst b/docs/sphinx/source/input/parameters/wind/KWD/KWD.acceleration_exponent.rst
index 171956fb4..84dfda4fb 100644
--- a/docs/sphinx/source/input/parameters/wind/KWD/KWD.acceleration_exponent.rst
+++ b/docs/sphinx/source/input/parameters/wind/KWD/KWD.acceleration_exponent.rst
@@ -14,7 +14,7 @@ Values
Greater than 0
File
- `knigge.c `_
+ `knigge.c `_
Parent(s)
diff --git a/docs/sphinx/source/input/parameters/wind/KWD/KWD.acceleration_length.rst b/docs/sphinx/source/input/parameters/wind/KWD/KWD.acceleration_length.rst
index d51465769..4e5771ed4 100644
--- a/docs/sphinx/source/input/parameters/wind/KWD/KWD.acceleration_length.rst
+++ b/docs/sphinx/source/input/parameters/wind/KWD/KWD.acceleration_length.rst
@@ -13,7 +13,7 @@ Values
Greater than 0
File
- `knigge.c `_
+ `knigge.c