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pandora2captureRequest

Script to retrieve information from pandora required for the capturing of a library

Usage

pandora2capture_request.R [options] .credentials

Options: -h, --help Show this help message and exit

-f FILE_LIBRARIES_ID, --file_libraries_id=FILE_LIBRARIES_ID
	CSV file containing all the libraries ID, probe set, sequecing kit, sequencing depth, cost center and lab

-r RESEARCHER, --researcher=RESEARCHER
	Name of the contact person for the request

-e EMAILRESEARCHER, --emailresearcher=EMAILRESEARCHER
	Email of the contact person for the request

-o OUTDIR, --outDir=OUTDIR
	The desired output directory. By default, it is the current directory.

Input file

The input File_libraries_id consist in a CSV file with the following header:

Library_ID,Probe_Set,Sequencing_Kit,Sequencing_Depth,Cost_Center,Lab
BIN003.A0101,1240k,HiSeq4000 75 SR,20M,Project,Lab
BIN019.A0101,1240k,HiSeq4000 75 SR,20M,Project,Lab
BIN022.A0101,1240k,HiSeq4000 75 SR,20M,Project,Lab

Note: You will require to have a Probe_set.csv file where the script is running. Please get in contact with @aidaanva to receive it!