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env.yaml
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name: n4j
channels:
- conda-forge
- defaults
dependencies:
- _libgcc_mutex=0.1=conda_forge
- _openmp_mutex=4.5=2_kmp_llvm
- anyio=4.3.0=pyhd8ed1ab_0
- argon2-cffi=23.1.0=pyhd8ed1ab_0
- argon2-cffi-bindings=21.2.0=py312h98912ed_4
- arrow=1.3.0=pyhd8ed1ab_0
- asttokens=2.4.1=pyhd8ed1ab_0
- async-lru=2.0.4=pyhd8ed1ab_0
- atk-1.0=2.38.0=hd4edc92_1
- attrs=23.2.0=pyh71513ae_0
- babel=2.14.0=pyhd8ed1ab_0
- beautifulsoup4=4.12.3=pyha770c72_0
- blas=1.0=mkl
- bleach=6.1.0=pyhd8ed1ab_0
- brotli=1.0.9=h5eee18b_7
- brotli-bin=1.0.9=h5eee18b_7
- brotli-python=1.0.9=py312h6a678d5_7
- bzip2=1.0.8=h7b6447c_0
- ca-certificates=2024.2.2=hbcca054_0
- cached-property=1.5.2=hd8ed1ab_1
- cached_property=1.5.2=pyha770c72_1
- cairo=1.18.0=h3faef2a_0
- cffi=1.16.0=py312hf06ca03_0
- charset-normalizer=3.3.2=pyhd8ed1ab_0
- comm=0.2.1=pyhd8ed1ab_0
- contourpy=1.2.0=py312hdb19cb5_0
- cycler=0.11.0=pyhd3eb1b0_0
- decorator=5.1.1=pyhd8ed1ab_0
- defusedxml=0.7.1=pyhd8ed1ab_0
- entrypoints=0.4=pyhd8ed1ab_0
- exceptiongroup=1.2.0=pyhd8ed1ab_2
- executing=2.0.1=pyhd8ed1ab_0
- expat=2.5.0=h6a678d5_0
- font-ttf-dejavu-sans-mono=2.37=hab24e00_0
- font-ttf-inconsolata=3.000=h77eed37_0
- font-ttf-source-code-pro=2.038=h77eed37_0
- font-ttf-ubuntu=0.83=h77eed37_1
- fontconfig=2.14.2=h14ed4e7_0
- fonts-conda-ecosystem=1=0
- fonts-conda-forge=1=0
- fonttools=4.25.0=pyhd3eb1b0_0
- fqdn=1.5.1=pyhd8ed1ab_0
- freetype=2.12.1=h4a9f257_0
- fribidi=1.0.10=h36c2ea0_0
- gdk-pixbuf=2.42.10=h05c8ddd_0
- gettext=0.21.1=h27087fc_0
- giflib=5.2.1=h5eee18b_3
- graphite2=1.3.13=h58526e2_1001
- graphviz=9.0.0=h78e8752_1
- gtk2=2.24.33=h7f000aa_3
- gts=0.7.6=h977cf35_4
- h11=0.14.0=pyhd8ed1ab_0
- h2=4.1.0=pyhd8ed1ab_0
- harfbuzz=8.3.0=h3d44ed6_0
- hpack=4.0.0=pyh9f0ad1d_0
- httpcore=1.0.5=pyhd8ed1ab_0
- httpx=0.27.0=pyhd8ed1ab_0
- hyperframe=6.0.1=pyhd8ed1ab_0
- icu=73.2=h59595ed_0
- idna=3.6=pyhd8ed1ab_0
- importlib-metadata=7.1.0=pyha770c72_0
- importlib_metadata=7.1.0=hd8ed1ab_0
- importlib_resources=6.4.0=pyhd8ed1ab_0
- intel-openmp=2023.1.0=hdb19cb5_46306
- ipympl=0.9.3=pyhd8ed1ab_0
- ipython_genutils=0.2.0=py_1
- ipywidgets=8.1.2=pyhd8ed1ab_0
- isoduration=20.11.0=pyhd8ed1ab_0
- jedi=0.19.1=pyhd8ed1ab_0
- jinja2=3.1.3=pyhd8ed1ab_0
- jpeg=9e=h5eee18b_1
- json5=0.9.24=pyhd8ed1ab_0
- jsonpointer=2.4=py312h7900ff3_3
- jsonschema=4.21.1=pyhd8ed1ab_0
- jsonschema-specifications=2023.12.1=pyhd8ed1ab_0
- jsonschema-with-format-nongpl=4.21.1=pyhd8ed1ab_0
- jupyter-lsp=2.2.4=pyhd8ed1ab_0
- jupyter_client=7.4.9=pyhd8ed1ab_0
- jupyter_core=5.7.2=py312h7900ff3_0
- jupyter_events=0.10.0=pyhd8ed1ab_0
- jupyter_server=2.13.0=pyhd8ed1ab_0
- jupyter_server_terminals=0.5.3=pyhd8ed1ab_0
- jupyterlab=4.1.5=pyhd8ed1ab_0
- jupyterlab_pygments=0.3.0=pyhd8ed1ab_1
- jupyterlab_server=2.25.4=pyhd8ed1ab_0
- jupyterlab_widgets=3.0.10=pyhd8ed1ab_0
- kiwisolver=1.4.4=py312h6a678d5_0
- lcms2=2.12=h3be6417_0
- ld_impl_linux-64=2.38=h1181459_1
- lerc=3.0=h295c915_0
- libbrotlicommon=1.0.9=h5eee18b_7
- libbrotlidec=1.0.9=h5eee18b_7
- libbrotlienc=1.0.9=h5eee18b_7
- libdeflate=1.17=h5eee18b_1
- libevent=2.1.12=hdbd6064_1
- libexpat=2.5.0=hcb278e6_1
- libffi=3.4.4=h6a678d5_0
- libgcc-ng=13.2.0=h807b86a_5
- libgd=2.3.3=h695aa2c_1
- libgfortran-ng=13.2.0=h69a702a_5
- libgfortran5=13.2.0=ha4646dd_5
- libglib=2.78.3=h783c2da_0
- libhwloc=2.9.3=default_h554bfaf_1009
- libiconv=1.17=hd590300_2
- libllvm9=9.0.1=default_hc23dcda_4
- libnl=3.9.0=hd590300_0
- libnsl=2.0.1=hd590300_0
- libpng=1.6.39=h5eee18b_0
- librsvg=2.56.3=he3f83f7_1
- libsodium=1.0.18=h36c2ea0_1
- libsqlite=3.45.1=h2797004_0
- libstdcxx-ng=13.2.0=h7e041cc_5
- libtiff=4.5.1=h6a678d5_0
- libuuid=2.38.1=h0b41bf4_0
- libwebp=1.3.2=h11a3e52_0
- libwebp-base=1.3.2=h5eee18b_0
- libxcb=1.15=h0b41bf4_0
- libxcrypt=4.4.36=hd590300_1
- libxml2=2.12.5=h232c23b_0
- libzlib=1.2.13=hd590300_5
- llvm-openmp=17.0.6=h4dfa4b3_0
- lz4-c=1.9.4=h6a678d5_0
- markupsafe=2.1.5=py312h98912ed_0
- matplotlib-base=3.8.0=py312h526ad5a_0
- matplotlib-inline=0.1.6=pyhd8ed1ab_0
- mistune=3.0.2=pyhd8ed1ab_0
- mkl=2023.1.0=h213fc3f_46344
- mkl-service=2.4.0=py312h5eee18b_1
- mkl_fft=1.3.8=py312h5eee18b_0
- mkl_random=1.2.4=py312hdb19cb5_0
- mpi=1.0=openmpi
- munkres=1.1.4=py_0
- nbclient=0.10.0=pyhd8ed1ab_0
- nbconvert-core=7.16.3=pyhd8ed1ab_0
- nbformat=5.10.4=pyhd8ed1ab_0
- ncurses=6.4=h6a678d5_0
- nest-asyncio=1.6.0=pyhd8ed1ab_0
- notebook=7.1.2=pyhd8ed1ab_0
- notebook-shim=0.2.4=pyhd8ed1ab_0
- numexpr=2.8.7=py312hf827012_0
- numpy=1.26.3=py312hc5e2394_0
- numpy-base=1.26.3=py312h0da6c21_0
- openjpeg=2.4.0=h3ad879b_0
- openmpi=5.0.2=h5b47a53_100
- openssl=3.2.1=hd590300_1
- overrides=7.7.0=pyhd8ed1ab_0
- pandas=2.1.4=py312h526ad5a_0
- pandocfilters=1.5.0=pyhd8ed1ab_0
- pango=1.50.14=ha41ecd1_2
- parso=0.8.3=pyhd8ed1ab_0
- pcre2=10.42=hcad00b1_0
- pexpect=4.9.0=pyhd8ed1ab_0
- pickleshare=0.7.5=py_1003
- pillow=10.0.1=py312ha6cbd5a_0
- pip=23.3.1=py312h06a4308_0
- pixman=0.43.2=h59595ed_0
- pkgutil-resolve-name=1.3.10=pyhd8ed1ab_1
- prometheus_client=0.20.0=pyhd8ed1ab_0
- psutil=5.9.8=py312h98912ed_0
- pthread-stubs=0.4=h36c2ea0_1001
- ptyprocess=0.7.0=pyhd3deb0d_0
- pure_eval=0.2.2=pyhd8ed1ab_0
- pycparser=2.22=pyhd8ed1ab_0
- pygments=2.17.2=pyhd8ed1ab_0
- pygraphviz=1.12=py312h7a1eb4d_0
- pyparsing=3.0.9=py312h06a4308_0
- pysocks=1.7.1=pyha2e5f31_6
- python=3.12.1=hab00c5b_1_cpython
- python-dateutil=2.8.2=pyhd3eb1b0_0
- python-fastjsonschema=2.19.1=pyhd8ed1ab_0
- python-json-logger=2.0.7=pyhd8ed1ab_0
- python-tzdata=2023.3=pyhd3eb1b0_0
- python_abi=3.12=4_cp312
- pyyaml=6.0.1=py312h98912ed_1
- readline=8.2=h5eee18b_0
- referencing=0.34.0=pyhd8ed1ab_0
- requests=2.31.0=pyhd8ed1ab_0
- rfc3339-validator=0.1.4=pyhd8ed1ab_0
- rfc3986-validator=0.1.1=pyh9f0ad1d_0
- rocm-opencl-driver=2.7.0=he1b5a44_0
- rpds-py=0.18.0=py312h4b3b743_0
- seaborn=0.12.2=py312h06a4308_0
- send2trash=1.8.2=pyh41d4057_0
- setuptools=68.2.2=py312h06a4308_0
- six=1.16.0=pyhd3eb1b0_1
- sniffio=1.3.1=pyhd8ed1ab_0
- soupsieve=2.5=pyhd8ed1ab_1
- sqlite=3.41.2=h5eee18b_0
- stack_data=0.6.2=pyhd8ed1ab_0
- tbb=2021.8.0=hdb19cb5_0
- terminado=0.18.1=pyh0d859eb_0
- tinycss2=1.2.1=pyhd8ed1ab_0
- tk=8.6.13=noxft_h4845f30_101
- tomli=2.0.1=pyhd8ed1ab_0
- tornado=6.4=py312h98912ed_0
- traitlets=5.14.1=pyhd8ed1ab_0
- types-python-dateutil=2.9.0.20240316=pyhd8ed1ab_0
- typing-extensions=4.9.0=hd8ed1ab_0
- typing_extensions=4.9.0=pyha770c72_0
- typing_utils=0.1.0=pyhd8ed1ab_0
- tzdata=2023d=h04d1e81_0
- uri-template=1.3.0=pyhd8ed1ab_0
- wcwidth=0.2.13=pyhd8ed1ab_0
- webcolors=1.13=pyhd8ed1ab_0
- webencodings=0.5.1=pyhd8ed1ab_2
- websocket-client=1.7.0=pyhd8ed1ab_0
- wheel=0.41.2=py312h06a4308_0
- widgetsnbextension=4.0.10=pyhd8ed1ab_0
- xorg-kbproto=1.0.7=h7f98852_1002
- xorg-libice=1.1.1=hd590300_0
- xorg-libsm=1.2.4=h7391055_0
- xorg-libx11=1.8.7=h8ee46fc_0
- xorg-libxau=1.0.11=hd590300_0
- xorg-libxdmcp=1.1.3=h7f98852_0
- xorg-libxext=1.3.4=h0b41bf4_2
- xorg-libxrender=0.9.11=hd590300_0
- xorg-renderproto=0.11.1=h7f98852_1002
- xorg-xextproto=7.3.0=h0b41bf4_1003
- xorg-xproto=7.0.31=h7f98852_1007
- xz=5.4.5=h5eee18b_0
- yaml=0.2.5=h7f98852_2
- zeromq=4.3.5=h59595ed_1
- zipp=3.17.0=pyhd8ed1ab_0
- zlib=1.2.13=hd590300_5
- zstd=1.5.5=hc292b87_0
- pip:
- annotated-types==0.6.0
- biopython==1.83
- bottleneck==1.3.7
- certifi==2023.11.17
- colorama==0.4.6
- cython==3.0.10
- debugpy==1.8.0
- dna-features-viewer==3.1.3
- foreground==0.1.2
- interchange==2021.0.4
- ipykernel==6.29.0
- ipython==8.20.0
- joblib==1.3.2
- jupyter-client==8.6.0
- jupyter-core==5.7.1
- llvmlite==0.42.0
- monotonic==1.6
- neo4j==5.15.0
- neomodel==5.2.1
- networkx==3.2.1
- numba==0.59.0
- orfipy==0.0.4
- packaging==23.2
- pansi==2020.7.3
- platformdirs==4.1.0
- prompt-toolkit==3.0.43
- pyahocorasick==2.1.0
- pydantic==2.5.3
- pydantic-core==2.14.6
- pyfastx==2.1.0
- pynndescent==0.5.11
- pyopencl==2024.1
- pyopengl==3.1.7
- pytools==2023.1.1
- pytz==2023.4
- pyzmq==25.1.2
- scikit-learn==1.4.1.post1
- scipy==1.12.0
- stack-data==0.6.3
- threadpoolctl==3.3.0
- tqdm==4.66.1
- umap-learn==0.5.5
- urllib3==2.1.0
- wget==3.2
- xmltodict==0.13.0
prefix: /home/hugheslab1/zfdeng/miniconda3/envs/n4j