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The first two build functions to acetylate the n-termini of a polypeptide work fine. The third build function works, but throws an error. The fourth build does not work. By building the first two acetylations, saving the PDB, then opening it again, all chains can be acetylated.
To Reproduce
Steps to reproduce the behavior:
Load the 5O3L PDB
Use one of the two options below three times on different chains:
PyMOL>editor.attach_amino_acid("chain A and resi 306 and name N", 'ace')
Where the chain identity changes
ctrl+middle mouse to select the n-terminal nitrogen, then build >> Residue >> Acetyl
See error:
Selector-Error: Invalid domain selection name "_tmp_editor_dom".
Selector-Error: Invalid domain selection name "_tmp_editor_dom".
Error: Invalid input selection(s)
Perform step 2 one more time:
See error:
Selector-Error: Invalid domain selection name "_tmp_editor_con".
Perform step 2 one more time:
See error:
Error: no coordinate for source anchor atom
Expected behavior
Since the first two build functions work, I would expect the same commands/mouse actions would not start failing at some point.
Screenshots
PyMOL>editor.attach_amino_acid("chain A and resi 306 and name N", 'ace')
PyMOL>editor.attach_amino_acid("chain B and resi 306 and name N", 'ace')
PyMOL>editor.attach_amino_acid("chain C and resi 306 and name N", 'ace')
Selector-Error: Invalid domain selection name "_tmp_editor_dom".
Selector-Error: Invalid domain selection name "_tmp_editor_dom".
Error: Invalid input selection(s)
PyMOL>editor.attach_amino_acid("chain D and resi 306 and name N", 'ace')
Selector-Error: Invalid domain selection name "_tmp_editor_con".
PyMOL>editor.attach_amino_acid("chain D and resi 306 and name N", 'ace')
Error: no coordinate for source anchor atom
Describe the bug
The first two build functions to acetylate the n-termini of a polypeptide work fine. The third build function works, but throws an error. The fourth build does not work. By building the first two acetylations, saving the PDB, then opening it again, all chains can be acetylated.
To Reproduce
Steps to reproduce the behavior:
PyMOL>editor.attach_amino_acid("chain A and resi 306 and name N", 'ace')
Where the chain identity changes
ctrl+middle mouse to select the n-terminal nitrogen, then build >> Residue >> Acetyl
Selector-Error: Invalid domain selection name "_tmp_editor_dom".
Selector-Error: Invalid domain selection name "_tmp_editor_dom".
Error: Invalid input selection(s)
Selector-Error: Invalid domain selection name "_tmp_editor_con".
Error: no coordinate for source anchor atom
Expected behavior
Since the first two build functions work, I would expect the same commands/mouse actions would not start failing at some point.
Screenshots
PyMOL>editor.attach_amino_acid("chain A and resi 306 and name N", 'ace')
PyMOL>editor.attach_amino_acid("chain B and resi 306 and name N", 'ace')
PyMOL>editor.attach_amino_acid("chain C and resi 306 and name N", 'ace')
Selector-Error: Invalid domain selection name "_tmp_editor_dom".
Selector-Error: Invalid domain selection name "_tmp_editor_dom".
Error: Invalid input selection(s)
PyMOL>editor.attach_amino_acid("chain D and resi 306 and name N", 'ace')
Selector-Error: Invalid domain selection name "_tmp_editor_con".
PyMOL>editor.attach_amino_acid("chain D and resi 306 and name N", 'ace')
Error: no coordinate for source anchor atom
Environment
Additional context
Add any other context about the problem here.
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