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sbmlpkgspec-paper.bib
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@article{hucka2003the,
author = {Hucka, Michael and Finney, Andrew and Sauro, Herbert M. and Bolouri, Hamid and Doyle, John {C}. and Kitano, Hiroaki and Arkin, Adam P. and Bornstein, Benjamin J. and Bray, Dennis and Cornish-Bowden, Athel and Cuellar, Autumn A. and Dronov, Sergey and Gilles, Ernst Dieter and Ginkel, Martin and Gor, Victoria and Goryanin, Igor {I}. and Hedley, Warren J. and Hodgman, T. Charles and Hofmeyr, Jan-Hendrik -. H. S. and Hunter, Peter J. and Juty, Nick S. and Kasberger, Jay L. and Kremling, Andreas and Kummer, Ursula and Le Nov\`{e}re, Nicolas and Loew, Leslie M. and Lucio, Daniel and Mendes, Pedro and Minch, Eric and Mjolsness, Eric D. and Nakayama, Yoichi and Nelson, Melanie R. and Nielsen, Poul F. and Sakurada, Takeshi and Schaff, James {C}. and Shapiro, Bruce E. and Shimizu, Thomas S. and Spence, Hugh D. and Stelling, J\"{o}rg and Takahashi, Kouichi and Tomita, Masaru and Wagner, John M. and Wang, J.},
title = {The systems biology markup language ({{SBML}}): a medium for representation and exchange of biochemical network models},
journal = {Bioinformatics},
volume = {19},
number = {4},
pages = {524-531},
year = {2003},
doi = {10.1093/bioinformatics/btg015},
sentelink = {~/Google%20Drive/SBML/sbml-bib/2003/Hucka/The%20systems%20biology%20markup%20language%20(SBML)%20a%20medium%20for%20representation%20and%20exchange%20of%20biochemical%20network%20models.pdf},
tags = {mypubs;L3 paper;abstract-done;cites SBML 2003 paper;{{SBML}}},
mybibtex = {hucka\_2003}
}
@article{waltemath2014meeting,
author = {Waltemath, Dagmar and Bergmann, Frank T. and Chaouiya, Claudine and Czauderna, Tobias and Gleeson, Padraig and Goble, Carole and Golebiewski, Martin and Hucka, Michael and Juty, Nick and Krebs, Olga and Le Nov\`{e}re, Nicolas and Mi, Huaiyu and Moraru, Ion {I}. and Myers, Chris J. and Nickerson, David and Olivier, Brett G. and Rodriguez, Nicolas and Schreiber, Falk and Smith, Lucian and Zhang, Fengkai and Bonnet, Eric},
title = {Meeting report from the fourth meeting of the {C}omputational {M}odeling in {B}iology {N}etwork ({COMBINE})},
journal = {Standards in Genomic Sciences},
volume = {9},
number = {3},
pages = {1285-1301},
month = mar,
year = {2014},
doi = {10.4056/sigs.5279417},
sentelink = {~/Google%20Drive/SBML/sbml-bib/2014/Waltemath/Meeting%20report%20from%20the%20fourth%20meeting%20of%20the%20Computational%20Modeling%20in%20Biology%20Network%20(COMBINE).pdf},
sentelink = {~/Google%20Drive/SBML/sbml-bib/2014/Waltemath/Meeting%20report%20from%20the%20fourth%20meeting%20of%20the%20Computational%20Modeling%20in%20Biology%20Network%20(COMBINE)%20%232.pdf},
tags = {sbml-renewal;mypubs;L3 paper;cites SBML 2003 paper;abstract-done}
}
@article{hucka2015the,
author = {Hucka, Michael and Bergmann, Frank T. and Hoops, Stefan and Keating, Sarah M. and Sahle, Sven and Schaff, James {C}. and Smith, Lucian P. and Wilkinson, Darren J.},
title = {The {S}ystems {B}iology {M}arkup {L}anguage ({{SBML}}): Language Specification for {L}evel 3 {V}ersion 1 {Core}},
journal = {Journal of Integrative Bioinformatics},
volume = {12},
number = {2},
pages = {266},
year = {2015},
doi = {10.2390/biecoll-jib-2015-266},
sentelink = {~/Google%20Drive/SBML/sbml-bib/2015/Hucka/The%20Systems%20Biology%20Markup%20Language%20(SBML)%20Language%20Specification%20for%20Level%203%20Version%201%20Core.pdf},
tags = {mypubs;L3 paper;cites SBML 2003 paper;uses SBML;abstract-done;not peer-reviewed}
}
@article{schreiber2015specifications,
author = {Schreiber, Falk and Bader, Gary D. and Golebiewski, Martin and Hucka, Michael and Kormeier, Benjamin and Le Nov\`{e}re, Nicolas and Myers, Chris and Nickerson, David and Sommer, Bj\"{o}rn and Waltemath, Dagmar and Weise, Stephan},
title = {Specifications of Standards in Systems and Synthetic Biology},
journal = {Journal of Integrative Bioinformatics},
volume = {12},
number = {2},
pages = {258},
address = {Germany},
month = sep,
year = {2015},
doi = {10.2390/biecoll-jib-2015-258},
sentelink = {~/Google%20Drive/SBML/sbml-bib/2015/Schreiber/Specifications%20of%20Standards%20in%20Systems%20and%20Synthetic%20Biology.pdf},
tags = {mypubs;L3 paper;cites SBML 2003 paper;not peer-reviewed}
}
@article{schreiber2016specifications,
author = {Schreiber, Falk and Bader, Gary D. and Gleeson, Padraig and Golebiewski, Martin and Hucka, Michael and Le Nov\`{e}re, Nicolas and Myers, Chris and Nickerson, David and Summer, Bj\"{o}rn and Waltemath, Dagmar},
title = {Specifications of standards in systems and synthetic biology: Status and Developments in 2016},
journal = {Journal of Integrative Bioinformatics},
volume = {13},
number = {3},
pages = {289},
year = {2016},
sentelink = {~/Google%20Drive/SBML/sbml-bib/2016/Schreiber/Specifications%20of%20standards%20in%20systems%20and%20synthetic%20biology%20Status%20and%20Developments%20in%202016.pdf},
url = {http://journal.imbio.de/article.php?aid=289},
tags = {mypubs;L3 paper;mentions SBML;cites SBML 2003 paper;not peer-reviewed;invited}
}
@book{lamport1994,
author = {Lamport, Leslie},
title = {LaTeX: A Document Preparation System},
publisher = {Addison-Wesley},
address = {Reading, Mass.},
year = 1994,
}
@article{drager2009sbml2latex,
author = {Dr\"{a}ger, Andreas and Planatscher, Hannes and Wouamba, Dieudonn\'{e} M. and Schr\"{o}der, Adrian and Hucka, Michael and Endler, Lukas and Golebiewski, Martin and M\"{u}ller, Wolfgang and Zell, Andreas},
title = {{SBML2LATEX}: Conversion of {{SBML}} files into human-readable reports},
journal = {Bioinformatics},
volume = {25},
number = {11},
pages = {1455-1456},
year = {2009},
doi = {Doi 10.1093/Bioinformatics/Btp170},
sentelink = {file:///Users/mhucka/resources/bib/sente-sync-library.sente6lib/Contents/Attachments/2009/SBML2LATEX%20Conversion%20of%20SBML%20files%20into%20human-readable%20reports.pdf,Sente,},
url = {},
tags = {mypubs;L3 paper;abstract-done;cites {{SBML}} 2003 paper;{{SBML}}}
}
@article{shen2010sbml2tikz,
author = {Shen, Si Yuan and Bergmann, Frank and Sauro, Herbert M.},
title = {{S}{B}{M}{L}2{T}ik{Z}: supporting the {{SBML}} render extension in {LaTeX}},
journal = {Bioinformatics},
volume = {26},
number = {21},
pages = {2794-5},
address = {England},
month = nov,
year = {2010},
doi = {10.1093/bioinformatics/btq512},
sentelink = {file:///Users/mhucka/resources/bib/sente-sync-library.sente6lib/Contents/Attachments/2010/SBML2TikZ%20supporting%20the%20SBML%20render%20extension%20in%20LaTeX.pdf,Sente,},
url = {},
tags = {L3 paper;abstract-done;cites {{SBML}} 2003 paper}
}