diff --git a/files/galaxy/tpv/tools.yml b/files/galaxy/tpv/tools.yml index 097ae1559..a6d745b3c 100644 --- a/files/galaxy/tpv/tools.yml +++ b/files/galaxy/tpv/tools.yml @@ -1060,24 +1060,21 @@ tools: require: - singularity - toolshed.g2.bx.psu.edu/repos/genouest/braker3/braker3/.*: + toolshed.g2.bx.psu.edu/repos/genouest/braker3/braker3/3.0.6.*: + mem: 4 cores: 6 + env: + GENEMARK_PATH: "/usr/local/tools/_conda/envs/__braker3@3.0.6/bin/genemark/bin/" + PROTHINT_PATH: "/usr/local/tools/_conda/envs/__braker3@3.0.6/bin/genemark/bin/gmes/ProtHint/bin/" + + toolshed.g2.bx.psu.edu/repos/genouest/braker3/braker3/3.0.3.*: mem: 4 + cores: 6 params: - singularity_enabled: true - rules: - - if: any(helpers.tool_version_eq(tool, version) for version in ['3.0.3+galaxy0', '3.0.3+galaxy1', '3.0.3+galaxy2']) - execute: | - entity.params['singularity_container_id_override']="docker://teambraker/braker3:v.1.0.4" - - if: helpers.tool_version_eq(tool, '3.0.6+galaxy2') - execute: | - entity.params['singularity_container_id_override']="docker://teambraker/braker3:v1.0.6" - env: - GENEMARK_PATH: "/usr/local/tools/_conda/envs/__braker3@3.0.6/bin/genemark/bin/" - PROTHINT_PATH: "/usr/local/tools/_conda/envs/__braker3@3.0.6/bin/genemark/bin/gmes/ProtHint/bin/" - - if: helpers.tool_version_eq(tool, '3.0.7+galaxy2') - execute: | - entity.params['singularity_container_id_override']="docker://teambraker/braker3:v3.0.7.1" + singularity_container_id_override: docker://quay.io/bgruening/braker3:v.1.0.4 + scheduling: + require: + - singularity # GeneMark is a pain and needs special casing toolshed.g2.bx.psu.edu/repos/genouest/braker/braker/.*: