From 55ba43f10a332d8bd2af160bddd8b4f6e77383a7 Mon Sep 17 00:00:00 2001
From: deeenes <turei.denes@gmail.com>
Date: Thu, 14 Nov 2024 14:57:06 +0100
Subject: [PATCH] HMDB foreign resource names insert works

---
 omnipath_metabo/data/resource-labels.yaml | 5 +++--
 omnipath_metabo/schema/_main.py           | 4 ++--
 2 files changed, 5 insertions(+), 4 deletions(-)

diff --git a/omnipath_metabo/data/resource-labels.yaml b/omnipath_metabo/data/resource-labels.yaml
index 4a1ecf2..73cb071 100644
--- a/omnipath_metabo/data/resource-labels.yaml
+++ b/omnipath_metabo/data/resource-labels.yaml
@@ -1,7 +1,7 @@
 HMDB:
   kegg_id: KEGG
   bigg_id: BIGG
-  pbd_id: PBD
+  pdb_id: PBD
   wikipedia_id: WikiPedia
   chemspider_id: ChemSpider
   fbonto_id: FBOnto
@@ -11,5 +11,6 @@ HMDB:
   foodb_id: FoodDB
   metlin_id: Metlin
   pubchem_compound_id: PubChem
-  phenol_explorer_id: Phenol-Explorer
+  phenol_explorer_compound_id: Phenol-Explorer
   vmh_id: Virtual Metbolic Human
+  knapsack_id: Knapsack
diff --git a/omnipath_metabo/schema/_main.py b/omnipath_metabo/schema/_main.py
index 18dccb5..7a123e2 100644
--- a/omnipath_metabo/schema/_main.py
+++ b/omnipath_metabo/schema/_main.py
@@ -132,9 +132,9 @@ def load(self):
 
         insert_resource = (
             insert(_structure.Resource).
-            values(name = resource_labels).
+            values([{'name': l} for l in resource_labels]).
             returning(_structure.Resource.id))
-    
+
         insert_resource = insert_resource.on_conflict_do_update(
                 index_elements=['name'],
                 set_ = {