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Following the example in the docs yield table creation error #1

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hepcat72 opened this issue Jul 11, 2018 · 1 comment
Open

Following the example in the docs yield table creation error #1

hepcat72 opened this issue Jul 11, 2018 · 1 comment

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@hepcat72
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hepcat72 commented Jul 11, 2018

I have 2 RNA samples (*.sort.sam files). The example shows that the table name should be the same for each file:

Repeat for the other RNA libraries with appropriate arguments, for example: Hrp48_HyperTRIBE_rep1.sort.sam testRNA rnalibs 3; Hrp48_HyperTRIBE_rep2.sort.sam testRNA rnalibs 4; HyperADARcd_rep1.sort.sam testRNA rnalibs 5

But when I make the second call to the load_table script, I get the following error:

Error in database creation: DBD::mysql::st execute failed: Table 'testRNA' already exists at /Genomics/grid/users/rleach/local/HyperTRIBE/CODE/load_matrix_data.pl line 36.

Should the table names be different or is this error innocuous?

@rosbashlab
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This is an innocuous error. The load_table.pl script tries to create the same database table for every data file.

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